Polygenic risk scores and physical activity

• Main Authors: Kujala, U. M. (Urho M.), Palviainen, T. (Teemu), Pesonen, P. (Paula), Waller, K. (Katja), Sillanpää, E. (Elina), Niemelä, M. (Maisa), Kangas, M. (Maarit), Vähä-Ypyä, H. (Henri), Sievänen, H. (Harri), Korpelainen, R. (Raija), Jämsä, T. (Timo), Männikkö, M. (Minna), Kaprio, J. (Jaakko)
• Format: Article in Journal/Newspaper
• Language: English
• Published: Wolters Kluwer 2020
• Subjects: exercise; gene; heritability; hidden heritability; Northern Finland
• Online Access: http://urn.fi/urn:nbn:fi-fe2020090468618

Abstract Purpose: Polygenic risk scores (PRS) summarize genome-wide genotype data into a single variable that produces an individual-level risk score for genetic liability. PRS has been used for prediction of chronic diseases and some risk factors. As PRS has been studied less for physical activity (PA), we constructed PRS for PA and studied how much variation in PA can be explained by this PRS in independent population samples. Methods: We calculated PRS for self-reported and objectively measured PA using UK Biobank genome-wide association study summary statistics, and analyzed how much of the variation in self-reported (MET-hours per day) and measured (steps and moderate-to-vigorous PA minutes per day) PA could be accounted for by the PRS in the Finnish Twin Cohorts (FTC; N = 759–11,528) and the Northern Finland Birth Cohort 1966 (NFBC1966; N = 3263–4061). Objective measurement of PA was done with wrist-worn accelerometer in UK Biobank and NFBC1966 studies, and with hip-worn accelerometer in the FTC. Results: The PRS accounted from 0.07% to 1.44% of the variation (R2) in the self-reported and objectively measured PA volumes (P value range = 0.023 to <0.0001) in the FTC and NFBC1966. For both self-reported and objectively measured PA, individuals in the highest PRS deciles had significantly (11%–28%) higher PA volumes compared with the lowest PRS deciles (P value range = 0.017 to <0.0001). Conclusions: PA is a multifactorial phenotype, and the PRS constructed based on UK Biobank results accounted for statistically significant but overall small proportion of the variation in PA in the Finnish cohorts. Using identical methods to assess PA and including less common and rare variants in the construction of PRS may increase the proportion of PA explained by the PRS.