A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set
PREMISE: To further advance the understanding of the species- rich, economically and ecologically important angiosperm order Myrtales in the rosid clade, comprising nine families, approximately 400 genera and almost 14,000 species occurring on all continents (except Antarctica), we tested the Angios...
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John Wiley & Sons Ltd
2021
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Online Access: | https://hdl.handle.net/1959.11/58585 https://rune.une.edu.au/web/retrieve/ed8f9d9e-d596-4b0a-93bf-4f319e71cd92 |
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ftunivnewengland:oai:rune.une.edu.au:1959.11/58585 2024-05-19T07:29:34+00:00 A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set Maurin, Olivier Anest, Artemis Bellot, Sidonie Biffin, Edward Brewer, Grace Charles-Dominique, Tristan Cowan, Robyn S Dodsworth, Steven Epitawalage, Niroshini Gallego, Berta Giaretta, Augusto Goldenberg, Renato Gonçalves, Deise J P Graham, Shirley Hoch, Peter Mazine, Fiorella Low, Yee Wen McGinnie, Catherine Michelangeli, Fabián A Morris, Sarah Penneys, Darin S Pérez Escobar, Oscar Alejandro Pillon, Yohan Pokorny, Lisa Shimizu, Gustavo Staggemeier, Vanessa G Thornhill, Andrew H School of Environmental and Rural Science orcid:0000-0002-0325-5725 Tomlinson, Kyle W Turner, Ian M Vasconcelos, Thais Wilson, Peter G Zuntini, Alexandre R Baker, William J Forest, Félix Lucas, Eve 2021-07 https://hdl.handle.net/1959.11/58585 https://rune.une.edu.au/web/retrieve/ed8f9d9e-d596-4b0a-93bf-4f319e71cd92 en eng John Wiley & Sons Ltd 10.1002/ajb2.1699 https://hdl.handle.net/1959.11/58585 https://rune.une.edu.au/web/retrieve/ed8f9d9e-d596-4b0a-93bf-4f319e71cd92 une:1959.11/58585 UNE Green http://creativecommons.org/licenses/by/4.0/ Evolutionary biology Journal Article 2021 ftunivnewengland 2024-04-24T23:40:05Z PREMISE: To further advance the understanding of the species- rich, economically and ecologically important angiosperm order Myrtales in the rosid clade, comprising nine families, approximately 400 genera and almost 14,000 species occurring on all continents (except Antarctica), we tested the Angiosperms353 probe kit.METHODS: We combined high- throughput sequencing and target enrichment with the Angiosperms353 probe kit to evaluate a sample of 485 species across 305 genera (76% of all genera in the order).RESULTS: Results provide the most comprehensive phylogenetic hypothesis for the order to date. Relationships at all ranks, such as the relationship of the early-diverging families, often reflect previous studies, but gene conflict is evident, and relationships previously found to be uncertain often remain so. Technical considerations for processing HTS data are also discussed.CONCLUSIONS: High- throughput sequencing and the Angiosperms353 probe kit are powerful tools for phylogenomic analysis, but better understanding of the genetic data available is required to identify genes and gene trees that account for likely incomplete lineage sorting and/or hybridization events. Article in Journal/Newspaper Antarc* Antarctica Research UNE - University of New England at Armidale, NSW Australia |
institution |
Open Polar |
collection |
Research UNE - University of New England at Armidale, NSW Australia |
op_collection_id |
ftunivnewengland |
language |
English |
topic |
Evolutionary biology |
spellingShingle |
Evolutionary biology Maurin, Olivier Anest, Artemis Bellot, Sidonie Biffin, Edward Brewer, Grace Charles-Dominique, Tristan Cowan, Robyn S Dodsworth, Steven Epitawalage, Niroshini Gallego, Berta Giaretta, Augusto Goldenberg, Renato Gonçalves, Deise J P Graham, Shirley Hoch, Peter Mazine, Fiorella Low, Yee Wen McGinnie, Catherine Michelangeli, Fabián A Morris, Sarah Penneys, Darin S Pérez Escobar, Oscar Alejandro Pillon, Yohan Pokorny, Lisa Shimizu, Gustavo Staggemeier, Vanessa G Thornhill, Andrew H School of Environmental and Rural Science orcid:0000-0002-0325-5725 Tomlinson, Kyle W Turner, Ian M Vasconcelos, Thais Wilson, Peter G Zuntini, Alexandre R Baker, William J Forest, Félix Lucas, Eve A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set |
topic_facet |
Evolutionary biology |
description |
PREMISE: To further advance the understanding of the species- rich, economically and ecologically important angiosperm order Myrtales in the rosid clade, comprising nine families, approximately 400 genera and almost 14,000 species occurring on all continents (except Antarctica), we tested the Angiosperms353 probe kit.METHODS: We combined high- throughput sequencing and target enrichment with the Angiosperms353 probe kit to evaluate a sample of 485 species across 305 genera (76% of all genera in the order).RESULTS: Results provide the most comprehensive phylogenetic hypothesis for the order to date. Relationships at all ranks, such as the relationship of the early-diverging families, often reflect previous studies, but gene conflict is evident, and relationships previously found to be uncertain often remain so. Technical considerations for processing HTS data are also discussed.CONCLUSIONS: High- throughput sequencing and the Angiosperms353 probe kit are powerful tools for phylogenomic analysis, but better understanding of the genetic data available is required to identify genes and gene trees that account for likely incomplete lineage sorting and/or hybridization events. |
format |
Article in Journal/Newspaper |
author |
Maurin, Olivier Anest, Artemis Bellot, Sidonie Biffin, Edward Brewer, Grace Charles-Dominique, Tristan Cowan, Robyn S Dodsworth, Steven Epitawalage, Niroshini Gallego, Berta Giaretta, Augusto Goldenberg, Renato Gonçalves, Deise J P Graham, Shirley Hoch, Peter Mazine, Fiorella Low, Yee Wen McGinnie, Catherine Michelangeli, Fabián A Morris, Sarah Penneys, Darin S Pérez Escobar, Oscar Alejandro Pillon, Yohan Pokorny, Lisa Shimizu, Gustavo Staggemeier, Vanessa G Thornhill, Andrew H School of Environmental and Rural Science orcid:0000-0002-0325-5725 Tomlinson, Kyle W Turner, Ian M Vasconcelos, Thais Wilson, Peter G Zuntini, Alexandre R Baker, William J Forest, Félix Lucas, Eve |
author_facet |
Maurin, Olivier Anest, Artemis Bellot, Sidonie Biffin, Edward Brewer, Grace Charles-Dominique, Tristan Cowan, Robyn S Dodsworth, Steven Epitawalage, Niroshini Gallego, Berta Giaretta, Augusto Goldenberg, Renato Gonçalves, Deise J P Graham, Shirley Hoch, Peter Mazine, Fiorella Low, Yee Wen McGinnie, Catherine Michelangeli, Fabián A Morris, Sarah Penneys, Darin S Pérez Escobar, Oscar Alejandro Pillon, Yohan Pokorny, Lisa Shimizu, Gustavo Staggemeier, Vanessa G Thornhill, Andrew H School of Environmental and Rural Science orcid:0000-0002-0325-5725 Tomlinson, Kyle W Turner, Ian M Vasconcelos, Thais Wilson, Peter G Zuntini, Alexandre R Baker, William J Forest, Félix Lucas, Eve |
author_sort |
Maurin, Olivier |
title |
A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set |
title_short |
A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set |
title_full |
A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set |
title_fullStr |
A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set |
title_full_unstemmed |
A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set |
title_sort |
nuclear phylogenomic study of the angiosperm order myrtales, exploring the potential and limitations of the universal angiosperms353 probe set |
publisher |
John Wiley & Sons Ltd |
publishDate |
2021 |
url |
https://hdl.handle.net/1959.11/58585 https://rune.une.edu.au/web/retrieve/ed8f9d9e-d596-4b0a-93bf-4f319e71cd92 |
genre |
Antarc* Antarctica |
genre_facet |
Antarc* Antarctica |
op_relation |
10.1002/ajb2.1699 https://hdl.handle.net/1959.11/58585 https://rune.une.edu.au/web/retrieve/ed8f9d9e-d596-4b0a-93bf-4f319e71cd92 une:1959.11/58585 |
op_rights |
UNE Green http://creativecommons.org/licenses/by/4.0/ |
_version_ |
1799479997819256832 |