Identification of a novel helitron transposon in the genome of Antarctic fish

A novel helitron from the genome of the icefish species Chionodraco hamatus, belonging to the Channichthyidae, the most derived Notothenioids family, was isolated, characterized and designated as HeliNoto (8.9 kb). Its ORF was compared to homologous sequences from different species in a comprehensiv...

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Published in:Molecular Phylogenetics and Evolution
Main Authors: Cocca E, De Iorio S, CAPRIGLIONE, TERESA
Other Authors: Cocca, E, De Iorio, S, Capriglione, Teresa
Format: Article in Journal/Newspaper
Language:English
Published: 2011
Subjects:
Antarctic
Antarc*
Icefish
Online Access:http://hdl.handle.net/11588/406816
https://doi.org/10.1016/j.ympev.2010.12.020
id ftunivnapoliiris:oai:www.iris.unina.it:11588/406816
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spelling ftunivnapoliiris:oai:www.iris.unina.it:11588/406816 2024-02-11T09:57:00+01:00 Identification of a novel helitron transposon in the genome of Antarctic fish Cocca E De Iorio S CAPRIGLIONE, TERESA Cocca, E De Iorio, S Capriglione, Teresa 2011 http://hdl.handle.net/11588/406816 https://doi.org/10.1016/j.ympev.2010.12.020 eng eng info:eu-repo/semantics/altIdentifier/wos/WOS:000288151000003 volume:58 firstpage:439 lastpage:446 journal:MOLECULAR PHYLOGENETICS AND EVOLUTION http://hdl.handle.net/11588/406816 doi:10.1016/j.ympev.2010.12.020 info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-79951943912 info:eu-repo/semantics/article 2011 ftunivnapoliiris https://doi.org/10.1016/j.ympev.2010.12.020 2024-01-23T23:25:45Z A novel helitron from the genome of the icefish species Chionodraco hamatus, belonging to the Channichthyidae, the most derived Notothenioids family, was isolated, characterized and designated as HeliNoto (8.9 kb). Its ORF was compared to homologous sequences from different species in a comprehensive phylogenetic analysis. For the first time the putative functional domains of a helitron were subjected to a well accurate structural analysis including chromosomal localization. Finally, the distribution of HeliNoto among Notothenioids was investigated. Article in Journal/Newspaper Antarc* Antarctic Icefish IRIS Università degli Studi di Napoli Federico II Antarctic Molecular Phylogenetics and Evolution 58 3 439 446
institution Open Polar
collection IRIS Università degli Studi di Napoli Federico II
op_collection_id ftunivnapoliiris
language English
description A novel helitron from the genome of the icefish species Chionodraco hamatus, belonging to the Channichthyidae, the most derived Notothenioids family, was isolated, characterized and designated as HeliNoto (8.9 kb). Its ORF was compared to homologous sequences from different species in a comprehensive phylogenetic analysis. For the first time the putative functional domains of a helitron were subjected to a well accurate structural analysis including chromosomal localization. Finally, the distribution of HeliNoto among Notothenioids was investigated.
author2 Cocca, E
De Iorio, S
Capriglione, Teresa
format Article in Journal/Newspaper
author Cocca E
De Iorio S
CAPRIGLIONE, TERESA
spellingShingle Cocca E
De Iorio S
CAPRIGLIONE, TERESA
Identification of a novel helitron transposon in the genome of Antarctic fish
author_facet Cocca E
De Iorio S
CAPRIGLIONE, TERESA
author_sort Cocca E
title Identification of a novel helitron transposon in the genome of Antarctic fish
title_short Identification of a novel helitron transposon in the genome of Antarctic fish
title_full Identification of a novel helitron transposon in the genome of Antarctic fish
title_fullStr Identification of a novel helitron transposon in the genome of Antarctic fish
title_full_unstemmed Identification of a novel helitron transposon in the genome of Antarctic fish
title_sort identification of a novel helitron transposon in the genome of antarctic fish
publishDate 2011
url http://hdl.handle.net/11588/406816
https://doi.org/10.1016/j.ympev.2010.12.020
geographic Antarctic
geographic_facet Antarctic
genre Antarc*
Antarctic
Icefish
genre_facet Antarc*
Antarctic
Icefish
op_relation info:eu-repo/semantics/altIdentifier/wos/WOS:000288151000003
volume:58
firstpage:439
lastpage:446
journal:MOLECULAR PHYLOGENETICS AND EVOLUTION
http://hdl.handle.net/11588/406816
doi:10.1016/j.ympev.2010.12.020
info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-79951943912
op_doi https://doi.org/10.1016/j.ympev.2010.12.020
container_title Molecular Phylogenetics and Evolution
container_volume 58
container_issue 3
container_start_page 439
op_container_end_page 446
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