Analysis of genomic variations related the biogeography of Mamiellales picoalgae

Mamiellales are an order of unicellular cosmopolitan green algae with ecologically important species such as Bathycoccus, Micromonas or Ostreococcus, major contributors to the primary production. This thesis uses this phytoplankton group with known reference genomes as a study model in order to bett...

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Main Author: Leconte, Jade
Other Authors: Génomique métabolique (UMR 8030), Genoscope - Centre national de séquençage Evry (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), Université Paris-Saclay, Olivier Jaillon
Format: Doctoral or Postdoctoral Thesis
Language:French
Published: HAL CCSD 2020
Subjects:
Online Access:https://tel.archives-ouvertes.fr/tel-03245712
https://tel.archives-ouvertes.fr/tel-03245712/document
https://tel.archives-ouvertes.fr/tel-03245712/file/2020UPASE013.pdf
id ftunivnantes:oai:HAL:tel-03245712v1
record_format openpolar
spelling ftunivnantes:oai:HAL:tel-03245712v1 2023-05-15T15:02:09+02:00 Analysis of genomic variations related the biogeography of Mamiellales picoalgae Analyses de variations génomiques liées à la biogéographie des picoalgues Mamiellales Leconte, Jade Génomique métabolique (UMR 8030) Genoscope - Centre national de séquençage Evry (GENOSCOPE) Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS) Université Paris-Saclay Olivier Jaillon 2020-08-28 https://tel.archives-ouvertes.fr/tel-03245712 https://tel.archives-ouvertes.fr/tel-03245712/document https://tel.archives-ouvertes.fr/tel-03245712/file/2020UPASE013.pdf fr fre HAL CCSD NNT: 2020UPASE013 tel-03245712 https://tel.archives-ouvertes.fr/tel-03245712 https://tel.archives-ouvertes.fr/tel-03245712/document https://tel.archives-ouvertes.fr/tel-03245712/file/2020UPASE013.pdf info:eu-repo/semantics/OpenAccess https://tel.archives-ouvertes.fr/tel-03245712 Génétique. Université Paris-Saclay, 2020. Français. ⟨NNT : 2020UPASE013⟩ Eukaryotic genomes Génomes eucaryotes [SDV.GEN]Life Sciences [q-bio]/Genetics info:eu-repo/semantics/doctoralThesis Theses 2020 ftunivnantes 2022-06-29T01:29:12Z Mamiellales are an order of unicellular cosmopolitan green algae with ecologically important species such as Bathycoccus, Micromonas or Ostreococcus, major contributors to the primary production. This thesis uses this phytoplankton group with known reference genomes as a study model in order to better analyze the impact of the environment on plankton using samples from the Tara Oceans expedition.To do this, different analyses were carried out to define their biogeography and ecological preferences, first in temperate waters then in the cold, nutrient-rich waters of the Arctic Ocean. In both cases, temperature was shown to be the main factor distinguishing the environment in which the different genomes were found. We then carried out a more detailed study in particular on Bathycoccus prasinos, a species abundant in these two distinct environments, in order to establish its population structure, which proved to be clearly separated into three groups: southern , arctic and temperate samples, again showing an impact of temperature but not only in view of the genomic distance between the first two basins.Finally, our study was extended with various collaborations, allowing us to observe a group of heterotrophic protists, the stramenopiles, and to perform analyses at the much larger scale of communities. All of these results conclude once again, among other things, on the strong impact of temperature, leading us to contribute to the question about the current context of climate change and its impact on plankton. Les Mamiellales sont un ordre d'algues vertes unicellulaires cosmopolites comprenant des espèces d'importance écologique telles que Bathycoccus, Micromonas ou encore Ostreococcus, des contributeurs majeurs à la production primaire. Cette thèse prend pour modèle d'étude ce groupe phytoplanctonique aux génomes de référence connus afin d'analyser au mieux l'impact de l'environnement sur le plancton grâce aux échantillons provenant de l'expédition Tara Oceans.Pour cela, différentes analyses ont été menées afin ... Doctoral or Postdoctoral Thesis Arctic Arctic Ocean Climate change Phytoplankton Université de Nantes: HAL-UNIV-NANTES Arctic Arctic Ocean
institution Open Polar
collection Université de Nantes: HAL-UNIV-NANTES
op_collection_id ftunivnantes
language French
topic Eukaryotic genomes
Génomes eucaryotes
[SDV.GEN]Life Sciences [q-bio]/Genetics
spellingShingle Eukaryotic genomes
Génomes eucaryotes
[SDV.GEN]Life Sciences [q-bio]/Genetics
Leconte, Jade
Analysis of genomic variations related the biogeography of Mamiellales picoalgae
topic_facet Eukaryotic genomes
Génomes eucaryotes
[SDV.GEN]Life Sciences [q-bio]/Genetics
description Mamiellales are an order of unicellular cosmopolitan green algae with ecologically important species such as Bathycoccus, Micromonas or Ostreococcus, major contributors to the primary production. This thesis uses this phytoplankton group with known reference genomes as a study model in order to better analyze the impact of the environment on plankton using samples from the Tara Oceans expedition.To do this, different analyses were carried out to define their biogeography and ecological preferences, first in temperate waters then in the cold, nutrient-rich waters of the Arctic Ocean. In both cases, temperature was shown to be the main factor distinguishing the environment in which the different genomes were found. We then carried out a more detailed study in particular on Bathycoccus prasinos, a species abundant in these two distinct environments, in order to establish its population structure, which proved to be clearly separated into three groups: southern , arctic and temperate samples, again showing an impact of temperature but not only in view of the genomic distance between the first two basins.Finally, our study was extended with various collaborations, allowing us to observe a group of heterotrophic protists, the stramenopiles, and to perform analyses at the much larger scale of communities. All of these results conclude once again, among other things, on the strong impact of temperature, leading us to contribute to the question about the current context of climate change and its impact on plankton. Les Mamiellales sont un ordre d'algues vertes unicellulaires cosmopolites comprenant des espèces d'importance écologique telles que Bathycoccus, Micromonas ou encore Ostreococcus, des contributeurs majeurs à la production primaire. Cette thèse prend pour modèle d'étude ce groupe phytoplanctonique aux génomes de référence connus afin d'analyser au mieux l'impact de l'environnement sur le plancton grâce aux échantillons provenant de l'expédition Tara Oceans.Pour cela, différentes analyses ont été menées afin ...
author2 Génomique métabolique (UMR 8030)
Genoscope - Centre national de séquençage Evry (GENOSCOPE)
Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA))
Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA))
Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS)
Université Paris-Saclay
Olivier Jaillon
format Doctoral or Postdoctoral Thesis
author Leconte, Jade
author_facet Leconte, Jade
author_sort Leconte, Jade
title Analysis of genomic variations related the biogeography of Mamiellales picoalgae
title_short Analysis of genomic variations related the biogeography of Mamiellales picoalgae
title_full Analysis of genomic variations related the biogeography of Mamiellales picoalgae
title_fullStr Analysis of genomic variations related the biogeography of Mamiellales picoalgae
title_full_unstemmed Analysis of genomic variations related the biogeography of Mamiellales picoalgae
title_sort analysis of genomic variations related the biogeography of mamiellales picoalgae
publisher HAL CCSD
publishDate 2020
url https://tel.archives-ouvertes.fr/tel-03245712
https://tel.archives-ouvertes.fr/tel-03245712/document
https://tel.archives-ouvertes.fr/tel-03245712/file/2020UPASE013.pdf
geographic Arctic
Arctic Ocean
geographic_facet Arctic
Arctic Ocean
genre Arctic
Arctic Ocean
Climate change
Phytoplankton
genre_facet Arctic
Arctic Ocean
Climate change
Phytoplankton
op_source https://tel.archives-ouvertes.fr/tel-03245712
Génétique. Université Paris-Saclay, 2020. Français. ⟨NNT : 2020UPASE013⟩
op_relation NNT: 2020UPASE013
tel-03245712
https://tel.archives-ouvertes.fr/tel-03245712
https://tel.archives-ouvertes.fr/tel-03245712/document
https://tel.archives-ouvertes.fr/tel-03245712/file/2020UPASE013.pdf
op_rights info:eu-repo/semantics/OpenAccess
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