Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae
International audience Microbial communities in the world ocean are affected strongly by oceanic circulation, creating characteristic marine biomes. The high connectivity of most of the ocean makes it difficult to disentangle selective retention of colonizing genotypes (with traits suited to biome s...
Published in: | Life Science Alliance |
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Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Other Authors: | , , , , , , , , , , , , , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
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HAL CCSD
2022
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Subjects: | |
Online Access: | https://hal-cnrs.archives-ouvertes.fr/hal-03859139 https://hal-cnrs.archives-ouvertes.fr/hal-03859139/document https://hal-cnrs.archives-ouvertes.fr/hal-03859139/file/Dorrell%202023%20Arctic%20LSA.pdf https://doi.org/10.26508/lsa.202201833 |
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Université de Nantes: HAL-UNIV-NANTES |
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ftunivnantes |
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English |
topic |
[SDV.BID]Life Sciences [q-bio]/Biodiversity [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology |
spellingShingle |
[SDV.BID]Life Sciences [q-bio]/Biodiversity [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology Dorrell, Richard Kuo, Alan Füssy, Zoltan Richardson, Elisabeth Salamov, Asaf Zarevski, Nikola Freyria, Nastasia Ibarbalz, Federico Jenkins, Jerry Karlusich, Juan Jose Pierella Steindorff, Andrei Stecca Edgar, Robyn Handley, Lori Lail, Kathleen Lipzen, Anna Lombard, Vincent Mcfarlane, John Nef, Charlotte Novák Vanclová, Anna M.G. Peng, Yi Plott, Chris Potvin, Marianne Vieira, Fabio Rocha Jimenez Barry, Kerrie Dacks, Joel de Vargas, Colomban Henrissat, Bernard Pelletier, Eric Schmutz, Jeremy Wincker, Patrick Bowler, Chris Grigoriev, Igor Lovejoy, Connie Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae |
topic_facet |
[SDV.BID]Life Sciences [q-bio]/Biodiversity [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology |
description |
International audience Microbial communities in the world ocean are affected strongly by oceanic circulation, creating characteristic marine biomes. The high connectivity of most of the ocean makes it difficult to disentangle selective retention of colonizing genotypes (with traits suited to biome specific conditions) from evolutionary selection, which would act on founder genotypes over time. The Arctic Ocean is exceptional with limited exchange with other oceans and ice covered since the last ice age. To test whether Arctic microalgal lineages evolved apart from algae in the global ocean, we sequenced four lineages of microalgae isolated from Arctic waters and sea ice. Here we show convergent evolution and highlight geographically limited HGT as an ecological adaptive force in the form of PFAM complements and horizontal acquisition of key adaptive genes. Notably, ice-binding proteins were acquired and horizontally transferred among Arctic strains. A comparison with Tara Oceans metagenomes and metatranscriptomes confirmed mostly Arctic distributions of these IBPs. The phylogeny of Arctic-specific genes indicated that these events were independent of bacterial-sourced HGTs in Antarctic Southern Ocean microalgae. |
author2 |
Institut de biologie de l'ENS Paris (IBENS) Département de Biologie - ENS Paris École normale supérieure - Paris (ENS-PSL) Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL) Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS) Lawrence Berkeley National Laboratory Berkeley (LBNL) Charles University Prague (CU) University of Alberta Université Laval Québec (ULaval) HudsonAlpha Genome Sequencing Center University of Alabama in Huntsville (UAH) Architecture et fonction des macromolécules biologiques (AFMB) Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) Station biologique de Roscoff (SBR) Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS) King Abdulaziz University Genoscope - Centre national de séquençage Evry (GENOSCOPE) Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA) ANR-21-CE02-0014,PanArctica,Caractérisation phylogénétique, écologique et physiologique de le pan-génome des algues Arctiques(2021) ANR-22-ERCS-0018,ChloroMosaic,Caractérisation moléculaire du réussite environnemental de la chloroplaste secondaire rouge(2022) |
format |
Article in Journal/Newspaper |
author |
Dorrell, Richard Kuo, Alan Füssy, Zoltan Richardson, Elisabeth Salamov, Asaf Zarevski, Nikola Freyria, Nastasia Ibarbalz, Federico Jenkins, Jerry Karlusich, Juan Jose Pierella Steindorff, Andrei Stecca Edgar, Robyn Handley, Lori Lail, Kathleen Lipzen, Anna Lombard, Vincent Mcfarlane, John Nef, Charlotte Novák Vanclová, Anna M.G. Peng, Yi Plott, Chris Potvin, Marianne Vieira, Fabio Rocha Jimenez Barry, Kerrie Dacks, Joel de Vargas, Colomban Henrissat, Bernard Pelletier, Eric Schmutz, Jeremy Wincker, Patrick Bowler, Chris Grigoriev, Igor Lovejoy, Connie |
author_facet |
Dorrell, Richard Kuo, Alan Füssy, Zoltan Richardson, Elisabeth Salamov, Asaf Zarevski, Nikola Freyria, Nastasia Ibarbalz, Federico Jenkins, Jerry Karlusich, Juan Jose Pierella Steindorff, Andrei Stecca Edgar, Robyn Handley, Lori Lail, Kathleen Lipzen, Anna Lombard, Vincent Mcfarlane, John Nef, Charlotte Novák Vanclová, Anna M.G. Peng, Yi Plott, Chris Potvin, Marianne Vieira, Fabio Rocha Jimenez Barry, Kerrie Dacks, Joel de Vargas, Colomban Henrissat, Bernard Pelletier, Eric Schmutz, Jeremy Wincker, Patrick Bowler, Chris Grigoriev, Igor Lovejoy, Connie |
author_sort |
Dorrell, Richard |
title |
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae |
title_short |
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae |
title_full |
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae |
title_fullStr |
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae |
title_full_unstemmed |
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae |
title_sort |
convergent evolution and horizontal gene transfer in arctic ocean microalgae |
publisher |
HAL CCSD |
publishDate |
2022 |
url |
https://hal-cnrs.archives-ouvertes.fr/hal-03859139 https://hal-cnrs.archives-ouvertes.fr/hal-03859139/document https://hal-cnrs.archives-ouvertes.fr/hal-03859139/file/Dorrell%202023%20Arctic%20LSA.pdf https://doi.org/10.26508/lsa.202201833 |
geographic |
Antarctic Arctic Arctic Ocean Southern Ocean |
geographic_facet |
Antarctic Arctic Arctic Ocean Southern Ocean |
genre |
Antarc* Antarctic Arctic Arctic Ocean Sea ice Southern Ocean |
genre_facet |
Antarc* Antarctic Arctic Arctic Ocean Sea ice Southern Ocean |
op_source |
ISSN: 2575-1077 Life Science Alliance https://hal-cnrs.archives-ouvertes.fr/hal-03859139 Life Science Alliance, 2022, 6 (3), pp.e202201833. ⟨10.26508/lsa.202201833⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.26508/lsa.202201833 hal-03859139 https://hal-cnrs.archives-ouvertes.fr/hal-03859139 https://hal-cnrs.archives-ouvertes.fr/hal-03859139/document https://hal-cnrs.archives-ouvertes.fr/hal-03859139/file/Dorrell%202023%20Arctic%20LSA.pdf BIORXIV: 2021.07.31.454568 doi:10.26508/lsa.202201833 |
op_rights |
info:eu-repo/semantics/OpenAccess |
op_doi |
https://doi.org/10.26508/lsa.202201833 |
container_title |
Life Science Alliance |
container_volume |
6 |
container_issue |
3 |
container_start_page |
e202201833 |
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1766272386181627904 |
spelling |
ftunivnantes:oai:HAL:hal-03859139v1 2023-05-15T14:02:14+02:00 Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae Dorrell, Richard Kuo, Alan Füssy, Zoltan Richardson, Elisabeth Salamov, Asaf Zarevski, Nikola Freyria, Nastasia Ibarbalz, Federico Jenkins, Jerry Karlusich, Juan Jose Pierella Steindorff, Andrei Stecca Edgar, Robyn Handley, Lori Lail, Kathleen Lipzen, Anna Lombard, Vincent Mcfarlane, John Nef, Charlotte Novák Vanclová, Anna M.G. Peng, Yi Plott, Chris Potvin, Marianne Vieira, Fabio Rocha Jimenez Barry, Kerrie Dacks, Joel de Vargas, Colomban Henrissat, Bernard Pelletier, Eric Schmutz, Jeremy Wincker, Patrick Bowler, Chris Grigoriev, Igor Lovejoy, Connie Institut de biologie de l'ENS Paris (IBENS) Département de Biologie - ENS Paris École normale supérieure - Paris (ENS-PSL) Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-École normale supérieure - Paris (ENS-PSL) Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS) Lawrence Berkeley National Laboratory Berkeley (LBNL) Charles University Prague (CU) University of Alberta Université Laval Québec (ULaval) HudsonAlpha Genome Sequencing Center University of Alabama in Huntsville (UAH) Architecture et fonction des macromolécules biologiques (AFMB) Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) Station biologique de Roscoff (SBR) Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS) King Abdulaziz University Genoscope - Centre national de séquençage Evry (GENOSCOPE) Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA) ANR-21-CE02-0014,PanArctica,Caractérisation phylogénétique, écologique et physiologique de le pan-génome des algues Arctiques(2021) ANR-22-ERCS-0018,ChloroMosaic,Caractérisation moléculaire du réussite environnemental de la chloroplaste secondaire rouge(2022) 2022 https://hal-cnrs.archives-ouvertes.fr/hal-03859139 https://hal-cnrs.archives-ouvertes.fr/hal-03859139/document https://hal-cnrs.archives-ouvertes.fr/hal-03859139/file/Dorrell%202023%20Arctic%20LSA.pdf https://doi.org/10.26508/lsa.202201833 en eng HAL CCSD Life Science Alliance LLC info:eu-repo/semantics/altIdentifier/doi/10.26508/lsa.202201833 hal-03859139 https://hal-cnrs.archives-ouvertes.fr/hal-03859139 https://hal-cnrs.archives-ouvertes.fr/hal-03859139/document https://hal-cnrs.archives-ouvertes.fr/hal-03859139/file/Dorrell%202023%20Arctic%20LSA.pdf BIORXIV: 2021.07.31.454568 doi:10.26508/lsa.202201833 info:eu-repo/semantics/OpenAccess ISSN: 2575-1077 Life Science Alliance https://hal-cnrs.archives-ouvertes.fr/hal-03859139 Life Science Alliance, 2022, 6 (3), pp.e202201833. ⟨10.26508/lsa.202201833⟩ [SDV.BID]Life Sciences [q-bio]/Biodiversity [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology info:eu-repo/semantics/article Journal articles 2022 ftunivnantes https://doi.org/10.26508/lsa.202201833 2023-02-08T01:57:46Z International audience Microbial communities in the world ocean are affected strongly by oceanic circulation, creating characteristic marine biomes. The high connectivity of most of the ocean makes it difficult to disentangle selective retention of colonizing genotypes (with traits suited to biome specific conditions) from evolutionary selection, which would act on founder genotypes over time. The Arctic Ocean is exceptional with limited exchange with other oceans and ice covered since the last ice age. To test whether Arctic microalgal lineages evolved apart from algae in the global ocean, we sequenced four lineages of microalgae isolated from Arctic waters and sea ice. Here we show convergent evolution and highlight geographically limited HGT as an ecological adaptive force in the form of PFAM complements and horizontal acquisition of key adaptive genes. Notably, ice-binding proteins were acquired and horizontally transferred among Arctic strains. A comparison with Tara Oceans metagenomes and metatranscriptomes confirmed mostly Arctic distributions of these IBPs. The phylogeny of Arctic-specific genes indicated that these events were independent of bacterial-sourced HGTs in Antarctic Southern Ocean microalgae. Article in Journal/Newspaper Antarc* Antarctic Arctic Arctic Ocean Sea ice Southern Ocean Université de Nantes: HAL-UNIV-NANTES Antarctic Arctic Arctic Ocean Southern Ocean Life Science Alliance 6 3 e202201833 |