Development of SNP markers derived from RAD sequencing for Atlantic salmon (Salmo salar L.) inhabiting the rivers of southern England
International audience Abstract The rivers of the Hampshire Basin, southern England contain a genetically unique group of Atlantic salmon that have suffered dramatic declines in numbers over the last 40 years. Knowledge of levels and patterns of genetic diversity is essential for effective managemen...
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ftunivnantes:oai:HAL:hal-03418409v1 2023-05-15T15:29:29+02:00 Development of SNP markers derived from RAD sequencing for Atlantic salmon (Salmo salar L.) inhabiting the rivers of southern England King, R. Andrew Stevens, Jamie University of Exeter 2021-05-20 https://hal.inrae.fr/hal-03418409 https://doi.org/10.1007/s12686-021-01215-6 en eng HAL CCSD Springer info:eu-repo/semantics/altIdentifier/doi/10.1007/s12686-021-01215-6 hal-03418409 https://hal.inrae.fr/hal-03418409 doi:10.1007/s12686-021-01215-6 ISSN: 1877-7252 EISSN: 1877-7260 Conservation Genetics Resources https://hal.inrae.fr/hal-03418409 Conservation Genetics Resources, 2021, ⟨10.1007/s12686-021-01215-6⟩ [SDE]Environmental Sciences info:eu-repo/semantics/article Journal articles 2021 ftunivnantes https://doi.org/10.1007/s12686-021-01215-6 2023-03-08T02:30:21Z International audience Abstract The rivers of the Hampshire Basin, southern England contain a genetically unique group of Atlantic salmon that have suffered dramatic declines in numbers over the last 40 years. Knowledge of levels and patterns of genetic diversity is essential for effective management of these vulnerable populations. Using restriction site-associated DNA sequencing (RADseq) data, we describe the development and characterisation of a panel of 94 single nucleotide polymorphism (SNP) loci for salmon from this region and investigate their applicability and variability in both target (i.e. southern English) and non-target populations. The SNP loci will be useful for population genetic and assignment studies on Atlantic salmon within the UK and beyond. Article in Journal/Newspaper Atlantic salmon Salmo salar Université de Nantes: HAL-UNIV-NANTES Conservation Genetics Resources 13 4 369 373 |
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Université de Nantes: HAL-UNIV-NANTES |
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English |
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[SDE]Environmental Sciences |
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[SDE]Environmental Sciences King, R. Andrew Stevens, Jamie Development of SNP markers derived from RAD sequencing for Atlantic salmon (Salmo salar L.) inhabiting the rivers of southern England |
topic_facet |
[SDE]Environmental Sciences |
description |
International audience Abstract The rivers of the Hampshire Basin, southern England contain a genetically unique group of Atlantic salmon that have suffered dramatic declines in numbers over the last 40 years. Knowledge of levels and patterns of genetic diversity is essential for effective management of these vulnerable populations. Using restriction site-associated DNA sequencing (RADseq) data, we describe the development and characterisation of a panel of 94 single nucleotide polymorphism (SNP) loci for salmon from this region and investigate their applicability and variability in both target (i.e. southern English) and non-target populations. The SNP loci will be useful for population genetic and assignment studies on Atlantic salmon within the UK and beyond. |
author2 |
University of Exeter |
format |
Article in Journal/Newspaper |
author |
King, R. Andrew Stevens, Jamie |
author_facet |
King, R. Andrew Stevens, Jamie |
author_sort |
King, R. Andrew |
title |
Development of SNP markers derived from RAD sequencing for Atlantic salmon (Salmo salar L.) inhabiting the rivers of southern England |
title_short |
Development of SNP markers derived from RAD sequencing for Atlantic salmon (Salmo salar L.) inhabiting the rivers of southern England |
title_full |
Development of SNP markers derived from RAD sequencing for Atlantic salmon (Salmo salar L.) inhabiting the rivers of southern England |
title_fullStr |
Development of SNP markers derived from RAD sequencing for Atlantic salmon (Salmo salar L.) inhabiting the rivers of southern England |
title_full_unstemmed |
Development of SNP markers derived from RAD sequencing for Atlantic salmon (Salmo salar L.) inhabiting the rivers of southern England |
title_sort |
development of snp markers derived from rad sequencing for atlantic salmon (salmo salar l.) inhabiting the rivers of southern england |
publisher |
HAL CCSD |
publishDate |
2021 |
url |
https://hal.inrae.fr/hal-03418409 https://doi.org/10.1007/s12686-021-01215-6 |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_source |
ISSN: 1877-7252 EISSN: 1877-7260 Conservation Genetics Resources https://hal.inrae.fr/hal-03418409 Conservation Genetics Resources, 2021, ⟨10.1007/s12686-021-01215-6⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1007/s12686-021-01215-6 hal-03418409 https://hal.inrae.fr/hal-03418409 doi:10.1007/s12686-021-01215-6 |
op_doi |
https://doi.org/10.1007/s12686-021-01215-6 |
container_title |
Conservation Genetics Resources |
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13 |
container_issue |
4 |
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369 |
op_container_end_page |
373 |
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1766359893086830592 |