Analysis of organellar genomes in brown algae reveals an independent introduction of similar foreign sequences into the mitochondrial genome

International audience Kelp species (Laminariales, Phaeophyceae) are globally widespread along temperate to Polar rocky coastal lines. Here we analyse the mitochondrial and chloroplast genomes of Laminaria rodriguezii, in comparison to the organellar genomes of other kelp species. We also provide th...

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Published in:Genomics
Main Authors: Rana, Shivani, Klaus, Valentin, Riehl, Jana, Blanfuné, Aurelie, Reynes, Lauric, Thibaut, Thierry, Bartsch, Inka, Eichinger, Ludwig, Glöckner, Gernot
Other Authors: Institut méditerranéen d'océanologie (MIO), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS)
Format: Article in Journal/Newspaper
Language:English
Published: HAL CCSD 2021
Subjects:
Online Access:https://hal.archives-ouvertes.fr/hal-03203985
https://hal.archives-ouvertes.fr/hal-03203985/document
https://hal.archives-ouvertes.fr/hal-03203985/file/1-s2.0-S088875432100029X-main.pdf
https://doi.org/10.1016/j.ygeno.2021.01.003
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spelling ftunivnantes:oai:HAL:hal-03203985v1 2023-05-15T15:05:30+02:00 Analysis of organellar genomes in brown algae reveals an independent introduction of similar foreign sequences into the mitochondrial genome Rana, Shivani Klaus, Valentin Riehl, Jana Blanfuné, Aurelie Reynes, Lauric Thibaut, Thierry Bartsch, Inka Eichinger, Ludwig Glöckner, Gernot Institut méditerranéen d'océanologie (MIO) Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS) 2021-03 https://hal.archives-ouvertes.fr/hal-03203985 https://hal.archives-ouvertes.fr/hal-03203985/document https://hal.archives-ouvertes.fr/hal-03203985/file/1-s2.0-S088875432100029X-main.pdf https://doi.org/10.1016/j.ygeno.2021.01.003 en eng HAL CCSD Elsevier info:eu-repo/semantics/altIdentifier/doi/10.1016/j.ygeno.2021.01.003 hal-03203985 https://hal.archives-ouvertes.fr/hal-03203985 https://hal.archives-ouvertes.fr/hal-03203985/document https://hal.archives-ouvertes.fr/hal-03203985/file/1-s2.0-S088875432100029X-main.pdf doi:10.1016/j.ygeno.2021.01.003 http://creativecommons.org/licenses/by-nd/ info:eu-repo/semantics/OpenAccess CC-BY-ND ISSN: 0888-7543 EISSN: 1089-8646 Genomics https://hal.archives-ouvertes.fr/hal-03203985 Genomics, Elsevier, 2021, 113 (2), pp.429-866. ⟨10.1016/j.ygeno.2021.01.003⟩ https://www.sciencedirect.com/journal/genomics/ Brown algae Mitochondrial lateral gene transfer Organellar genomes Phylogeny [SDU]Sciences of the Universe [physics] [SDU.OCEAN]Sciences of the Universe [physics]/Ocean Atmosphere info:eu-repo/semantics/article Journal articles 2021 ftunivnantes https://doi.org/10.1016/j.ygeno.2021.01.003 2022-06-29T01:35:37Z International audience Kelp species (Laminariales, Phaeophyceae) are globally widespread along temperate to Polar rocky coastal lines. Here we analyse the mitochondrial and chloroplast genomes of Laminaria rodriguezii, in comparison to the organellar genomes of other kelp species. We also provide the complete mitochondrial genome sequence of another endemic kelp species from a Polar habitat, the Arctic Laminaria solidungula. We compare phylogenetic trees derived from twenty complete mitochondrial and seven complete chloroplast kelp genomes. Interestingly, we found a stretch of more than 700 bp in the mitochondrial genome of L.rodriguezii, which is not present in any other yet sequenced member of the Phaeophyceae. This stretch matches a protein coding region in the mitochondrial genome from Desmarestia viridis, another brown seaweed. Their high similarity suggests that these sequences originated through independent introduction into the two species. Their origin could have been by infection by yet unknown similar mitoviruses, currently only known from fungi and plants. Article in Journal/Newspaper Arctic Université de Nantes: HAL-UNIV-NANTES Arctic Genomics 113 2 646 654
institution Open Polar
collection Université de Nantes: HAL-UNIV-NANTES
op_collection_id ftunivnantes
language English
topic Brown algae
Mitochondrial lateral gene transfer
Organellar genomes
Phylogeny
[SDU]Sciences of the Universe [physics]
[SDU.OCEAN]Sciences of the Universe [physics]/Ocean
Atmosphere
spellingShingle Brown algae
Mitochondrial lateral gene transfer
Organellar genomes
Phylogeny
[SDU]Sciences of the Universe [physics]
[SDU.OCEAN]Sciences of the Universe [physics]/Ocean
Atmosphere
Rana, Shivani
Klaus, Valentin
Riehl, Jana
Blanfuné, Aurelie
Reynes, Lauric
Thibaut, Thierry
Bartsch, Inka
Eichinger, Ludwig
Glöckner, Gernot
Analysis of organellar genomes in brown algae reveals an independent introduction of similar foreign sequences into the mitochondrial genome
topic_facet Brown algae
Mitochondrial lateral gene transfer
Organellar genomes
Phylogeny
[SDU]Sciences of the Universe [physics]
[SDU.OCEAN]Sciences of the Universe [physics]/Ocean
Atmosphere
description International audience Kelp species (Laminariales, Phaeophyceae) are globally widespread along temperate to Polar rocky coastal lines. Here we analyse the mitochondrial and chloroplast genomes of Laminaria rodriguezii, in comparison to the organellar genomes of other kelp species. We also provide the complete mitochondrial genome sequence of another endemic kelp species from a Polar habitat, the Arctic Laminaria solidungula. We compare phylogenetic trees derived from twenty complete mitochondrial and seven complete chloroplast kelp genomes. Interestingly, we found a stretch of more than 700 bp in the mitochondrial genome of L.rodriguezii, which is not present in any other yet sequenced member of the Phaeophyceae. This stretch matches a protein coding region in the mitochondrial genome from Desmarestia viridis, another brown seaweed. Their high similarity suggests that these sequences originated through independent introduction into the two species. Their origin could have been by infection by yet unknown similar mitoviruses, currently only known from fungi and plants.
author2 Institut méditerranéen d'océanologie (MIO)
Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Toulon (UTLN)-Centre National de la Recherche Scientifique (CNRS)
format Article in Journal/Newspaper
author Rana, Shivani
Klaus, Valentin
Riehl, Jana
Blanfuné, Aurelie
Reynes, Lauric
Thibaut, Thierry
Bartsch, Inka
Eichinger, Ludwig
Glöckner, Gernot
author_facet Rana, Shivani
Klaus, Valentin
Riehl, Jana
Blanfuné, Aurelie
Reynes, Lauric
Thibaut, Thierry
Bartsch, Inka
Eichinger, Ludwig
Glöckner, Gernot
author_sort Rana, Shivani
title Analysis of organellar genomes in brown algae reveals an independent introduction of similar foreign sequences into the mitochondrial genome
title_short Analysis of organellar genomes in brown algae reveals an independent introduction of similar foreign sequences into the mitochondrial genome
title_full Analysis of organellar genomes in brown algae reveals an independent introduction of similar foreign sequences into the mitochondrial genome
title_fullStr Analysis of organellar genomes in brown algae reveals an independent introduction of similar foreign sequences into the mitochondrial genome
title_full_unstemmed Analysis of organellar genomes in brown algae reveals an independent introduction of similar foreign sequences into the mitochondrial genome
title_sort analysis of organellar genomes in brown algae reveals an independent introduction of similar foreign sequences into the mitochondrial genome
publisher HAL CCSD
publishDate 2021
url https://hal.archives-ouvertes.fr/hal-03203985
https://hal.archives-ouvertes.fr/hal-03203985/document
https://hal.archives-ouvertes.fr/hal-03203985/file/1-s2.0-S088875432100029X-main.pdf
https://doi.org/10.1016/j.ygeno.2021.01.003
geographic Arctic
geographic_facet Arctic
genre Arctic
genre_facet Arctic
op_source ISSN: 0888-7543
EISSN: 1089-8646
Genomics
https://hal.archives-ouvertes.fr/hal-03203985
Genomics, Elsevier, 2021, 113 (2), pp.429-866. ⟨10.1016/j.ygeno.2021.01.003⟩
https://www.sciencedirect.com/journal/genomics/
op_relation info:eu-repo/semantics/altIdentifier/doi/10.1016/j.ygeno.2021.01.003
hal-03203985
https://hal.archives-ouvertes.fr/hal-03203985
https://hal.archives-ouvertes.fr/hal-03203985/document
https://hal.archives-ouvertes.fr/hal-03203985/file/1-s2.0-S088875432100029X-main.pdf
doi:10.1016/j.ygeno.2021.01.003
op_rights http://creativecommons.org/licenses/by-nd/
info:eu-repo/semantics/OpenAccess
op_rightsnorm CC-BY-ND
op_doi https://doi.org/10.1016/j.ygeno.2021.01.003
container_title Genomics
container_volume 113
container_issue 2
container_start_page 646
op_container_end_page 654
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