Diversity and endemism of Murinae rodents in Thai limestone karsts
International audience This study aims to investigate the species diversity of rodents living in karst ecosystems of Thailand. A survey has been conducted throughout Thailand, 122 karsts sampled and 477 Murinae rodents live-trapped. Phylogenetic reconstructions were carried out using two mitochondri...
Published in: | Systematics and Biodiversity |
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Main Authors: | , , , , , |
Other Authors: | , , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
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HAL CCSD
2013
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Online Access: | https://hal.inrae.fr/hal-02652511 https://doi.org/10.1080/14772000.2013.818587 |
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ftunivnantes:oai:HAL:hal-02652511v1 |
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openpolar |
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Open Polar |
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Université de Nantes: HAL-UNIV-NANTES |
op_collection_id |
ftunivnantes |
language |
English |
topic |
GMYC lineages limestone karsts Murinae rodents Southeast Asia species delimitation Thailand GENETIC SPECIES CONCEPT RATTUS-RATTUS SOFTWARE BIODIVERSITY CONSERVATION DELIMITATION Rattini DNA MAMMALS DISTRIBUTIONS TRANSITION [SDV]Life Sciences [q-bio] |
spellingShingle |
GMYC lineages limestone karsts Murinae rodents Southeast Asia species delimitation Thailand GENETIC SPECIES CONCEPT RATTUS-RATTUS SOFTWARE BIODIVERSITY CONSERVATION DELIMITATION Rattini DNA MAMMALS DISTRIBUTIONS TRANSITION [SDV]Life Sciences [q-bio] Latinne, Alice Waengsothorn, Surachit Rojanadilok, Prateep Eiamampai, Krairat Sribuarod, Kriangsak Michaux, Johan Diversity and endemism of Murinae rodents in Thai limestone karsts |
topic_facet |
GMYC lineages limestone karsts Murinae rodents Southeast Asia species delimitation Thailand GENETIC SPECIES CONCEPT RATTUS-RATTUS SOFTWARE BIODIVERSITY CONSERVATION DELIMITATION Rattini DNA MAMMALS DISTRIBUTIONS TRANSITION [SDV]Life Sciences [q-bio] |
description |
International audience This study aims to investigate the species diversity of rodents living in karst ecosystems of Thailand. A survey has been conducted throughout Thailand, 122 karsts sampled and 477 Murinae rodents live-trapped. Phylogenetic reconstructions were carried out using two mitochondrial markers (cytb, COI). A sequence-based species delimitation method completed by the analysis of the level of genetic divergence was then applied to define species boundaries within our dataset. The phylogenetic position of Niviventer hinpoon was also investigated and sequences obtained from the holotype specimen of this species were used to reliably identify samples of N. hinpoon. A total of 12 described Murinae species, corresponding to 17 deeply divergent genetic lineages, were encountered in limestone karsts of Thailand. Our study revealed an important genetic diversity within the traditionally recognized species Maxomys surifer (four highly divergent genetic lineages), Leopoldamys neilli (two highly divergent genetic lineages) and Berylmys bowersi (two highly divergent genetic lineages). These species could be considered as species complex and require further taxonomic work. This study also provides valuable information on the distribution of the two rodent species endemic to limestone karsts of Thailand, L. neilli and N. hinpoon. Leopoldamys neilli was the most abundant species encountered in Thai karsts during our survey. However, L. neilli specimens from western Thailand are genetically highly divergent from the remaining populations of L. neilli and could represent a separate species. Niviventer hinpoon, phylogenetically closely related to N. fulvescens, is much rarer and its distribution limited to central Thailand. Most of the other captured species are typically associated with forest ecosystems. This study suggests that limestone karsts play a key role in the preservation of the rodent species endemic to such habitat, but they would also provide refuges for the forest-dwelling Murinae rodents in ... |
author2 |
Université de Liège Thailand Institute of Scientific and Technological Research Doi Chiangdao Wildlife Res Stn Partenaires INRAE Bung Boraphet Wildlife Research Station Khlong Saeng Wildlife Research Station Centre de Biologie pour la Gestion des Populations (UMR CBGP) Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD France-Sud )-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro) Belgian FRS-FNRS (Fonds de la Recherche Scientifique); Belgian FRS-FNRS ('credits pour brefs sejours a l'etranger' ); Belgian FRS-FNRS ('credits pour brefs sejours a l'etranger'); network "Bibliotheque du Vivant'; CNRS; Museum National d'Histoire Naturelle; INRA; CEA (Centre National de Sequencage); 'CERoPath project' (Community Ecology of Rodents and their Pathogens in South-East Asia: effects of biodiversity changes and implications in health ecology), ANR Biodiversity ANR 07 BDIV 01 French National Agency for Research |
format |
Article in Journal/Newspaper |
author |
Latinne, Alice Waengsothorn, Surachit Rojanadilok, Prateep Eiamampai, Krairat Sribuarod, Kriangsak Michaux, Johan |
author_facet |
Latinne, Alice Waengsothorn, Surachit Rojanadilok, Prateep Eiamampai, Krairat Sribuarod, Kriangsak Michaux, Johan |
author_sort |
Latinne, Alice |
title |
Diversity and endemism of Murinae rodents in Thai limestone karsts |
title_short |
Diversity and endemism of Murinae rodents in Thai limestone karsts |
title_full |
Diversity and endemism of Murinae rodents in Thai limestone karsts |
title_fullStr |
Diversity and endemism of Murinae rodents in Thai limestone karsts |
title_full_unstemmed |
Diversity and endemism of Murinae rodents in Thai limestone karsts |
title_sort |
diversity and endemism of murinae rodents in thai limestone karsts |
publisher |
HAL CCSD |
publishDate |
2013 |
url |
https://hal.inrae.fr/hal-02652511 https://doi.org/10.1080/14772000.2013.818587 |
genre |
Rattus rattus |
genre_facet |
Rattus rattus |
op_source |
ISSN: 1477-2000 EISSN: 1478-0933 Systematics and Biodiversity https://hal.inrae.fr/hal-02652511 Systematics and Biodiversity, Taylor & Francis: STM, Behavioural Science and Public Health Titles, 2013, 11 (3), pp.323 - 344. ⟨10.1080/14772000.2013.818587⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1080/14772000.2013.818587 hal-02652511 https://hal.inrae.fr/hal-02652511 doi:10.1080/14772000.2013.818587 PRODINRA: 219454 WOS: 000325124400005 |
op_doi |
https://doi.org/10.1080/14772000.2013.818587 |
container_title |
Systematics and Biodiversity |
container_volume |
11 |
container_issue |
3 |
container_start_page |
323 |
op_container_end_page |
344 |
_version_ |
1766177182782062592 |
spelling |
ftunivnantes:oai:HAL:hal-02652511v1 2023-05-15T18:05:41+02:00 Diversity and endemism of Murinae rodents in Thai limestone karsts Latinne, Alice Waengsothorn, Surachit Rojanadilok, Prateep Eiamampai, Krairat Sribuarod, Kriangsak Michaux, Johan Université de Liège Thailand Institute of Scientific and Technological Research Doi Chiangdao Wildlife Res Stn Partenaires INRAE Bung Boraphet Wildlife Research Station Khlong Saeng Wildlife Research Station Centre de Biologie pour la Gestion des Populations (UMR CBGP) Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Université de Montpellier (UM)-Institut de Recherche pour le Développement (IRD France-Sud )-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro) Belgian FRS-FNRS (Fonds de la Recherche Scientifique); Belgian FRS-FNRS ('credits pour brefs sejours a l'etranger' ); Belgian FRS-FNRS ('credits pour brefs sejours a l'etranger'); network "Bibliotheque du Vivant'; CNRS; Museum National d'Histoire Naturelle; INRA; CEA (Centre National de Sequencage); 'CERoPath project' (Community Ecology of Rodents and their Pathogens in South-East Asia: effects of biodiversity changes and implications in health ecology), ANR Biodiversity ANR 07 BDIV 01 French National Agency for Research 2013 https://hal.inrae.fr/hal-02652511 https://doi.org/10.1080/14772000.2013.818587 en eng HAL CCSD Taylor & Francis: STM, Behavioural Science and Public Health Titles info:eu-repo/semantics/altIdentifier/doi/10.1080/14772000.2013.818587 hal-02652511 https://hal.inrae.fr/hal-02652511 doi:10.1080/14772000.2013.818587 PRODINRA: 219454 WOS: 000325124400005 ISSN: 1477-2000 EISSN: 1478-0933 Systematics and Biodiversity https://hal.inrae.fr/hal-02652511 Systematics and Biodiversity, Taylor & Francis: STM, Behavioural Science and Public Health Titles, 2013, 11 (3), pp.323 - 344. ⟨10.1080/14772000.2013.818587⟩ GMYC lineages limestone karsts Murinae rodents Southeast Asia species delimitation Thailand GENETIC SPECIES CONCEPT RATTUS-RATTUS SOFTWARE BIODIVERSITY CONSERVATION DELIMITATION Rattini DNA MAMMALS DISTRIBUTIONS TRANSITION [SDV]Life Sciences [q-bio] info:eu-repo/semantics/article Journal articles 2013 ftunivnantes https://doi.org/10.1080/14772000.2013.818587 2022-11-16T01:02:00Z International audience This study aims to investigate the species diversity of rodents living in karst ecosystems of Thailand. A survey has been conducted throughout Thailand, 122 karsts sampled and 477 Murinae rodents live-trapped. Phylogenetic reconstructions were carried out using two mitochondrial markers (cytb, COI). A sequence-based species delimitation method completed by the analysis of the level of genetic divergence was then applied to define species boundaries within our dataset. The phylogenetic position of Niviventer hinpoon was also investigated and sequences obtained from the holotype specimen of this species were used to reliably identify samples of N. hinpoon. A total of 12 described Murinae species, corresponding to 17 deeply divergent genetic lineages, were encountered in limestone karsts of Thailand. Our study revealed an important genetic diversity within the traditionally recognized species Maxomys surifer (four highly divergent genetic lineages), Leopoldamys neilli (two highly divergent genetic lineages) and Berylmys bowersi (two highly divergent genetic lineages). These species could be considered as species complex and require further taxonomic work. This study also provides valuable information on the distribution of the two rodent species endemic to limestone karsts of Thailand, L. neilli and N. hinpoon. Leopoldamys neilli was the most abundant species encountered in Thai karsts during our survey. However, L. neilli specimens from western Thailand are genetically highly divergent from the remaining populations of L. neilli and could represent a separate species. Niviventer hinpoon, phylogenetically closely related to N. fulvescens, is much rarer and its distribution limited to central Thailand. Most of the other captured species are typically associated with forest ecosystems. This study suggests that limestone karsts play a key role in the preservation of the rodent species endemic to such habitat, but they would also provide refuges for the forest-dwelling Murinae rodents in ... Article in Journal/Newspaper Rattus rattus Université de Nantes: HAL-UNIV-NANTES Systematics and Biodiversity 11 3 323 344 |