Validation of growth-related quantitative trait loci markers in turbot ( Scophthalmus maximus ) families as a step toward marker assisted selection
International audience Turbot (Scophthalmus maximus) is a valuable flatfish with current selection programs to increase growth rate in the fifth generation. Disentangling the genetic architecture of growth traits has biological and productive relevance. Growth-related quantitative trait loci (QTL) a...
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Format: | Article in Journal/Newspaper |
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Online Access: | https://hal.inrae.fr/hal-02628266 https://doi.org/10.1016/j.aquaculture.2018.06.010 |
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ftunivnantes:oai:HAL:hal-02628266v1 2023-05-15T18:15:42+02:00 Validation of growth-related quantitative trait loci markers in turbot ( Scophthalmus maximus ) families as a step toward marker assisted selection Sciara, A.A. Rodríguez-Ramilo, Silvia Teresa Hermida, M. Gómez-Tato, A. Fernandez, J. Bouza, C. Martinez, P. Universidade de Santiago de Compostela Spain (USC ) Consejo Nacional de Investigaciones Científicas y Técnicas Génétique Physiologie et Systèmes d'Elevage (GenPhySE ) Institut National de la Recherche Agronomique (INRA)-Ecole Nationale Vétérinaire de Toulouse (ENVT) Institut National Polytechnique (Toulouse) (Toulouse INP) Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP) Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-École nationale supérieure agronomique de Toulouse ENSAT Inst Nacl Invest & Tecnol Agr & Alimentaria Partenaires INRAE 2018 https://hal.inrae.fr/hal-02628266 https://doi.org/10.1016/j.aquaculture.2018.06.010 en eng HAL CCSD Elsevier info:eu-repo/semantics/altIdentifier/doi/10.1016/j.aquaculture.2018.06.010 hal-02628266 https://hal.inrae.fr/hal-02628266 doi:10.1016/j.aquaculture.2018.06.010 PRODINRA: 442901 WOS: 000439123500071 ISSN: 0044-8486 Aquaculture https://hal.inrae.fr/hal-02628266 Aquaculture, 2018, 495, pp.602-610. ⟨10.1016/j.aquaculture.2018.06.010⟩ scophthalmus maximus growth molecular marker qtl validation candidate gene MAS [SDV]Life Sciences [q-bio] [SDV.GEN]Life Sciences [q-bio]/Genetics [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics [INFO]Computer Science [cs] info:eu-repo/semantics/article Journal articles 2018 ftunivnantes https://doi.org/10.1016/j.aquaculture.2018.06.010 2023-02-22T06:42:31Z International audience Turbot (Scophthalmus maximus) is a valuable flatfish with current selection programs to increase growth rate in the fifth generation. Disentangling the genetic architecture of growth traits has biological and productive relevance. Growth-related quantitative trait loci (QTL) and associated markers have been previously reported in turbot. Here, we tested the performance of 39 markers associated with three growth-related traits (body weight (BW), body length (BL) and condition factor (FK)) in 18 families for their potential application in marker assisted selection (MAS) in this species. A cost-effective selective genotyping approach was developed by checking the statistical power of small samples at the extreme of the phenotypic distributions. Associations between growth traits and markers were performed using two statistical approaches (contingency chi-square tests and stepwise regression analysis) to identify the most robust set of markers. Twenty markers were detected by both methods, mostly linked to previously reported growth-related QTL and encompassing 11 linkage groups (LGs). The stepwise regression analysis revealed that a subset of seven markers explained nearly 40% and 60% of the phenotypic variation at genotypic and allelic level, respectively, for BW and BL. Seven markers for BW and BL and other two for FK showed association at population level, when all family data were pooled. Validated markers might be useful to go a step forward to improve growth performance through more refined MAS, and as physical anchors for identifying causal genes underpinning growth traits in turbot. Article in Journal/Newspaper Scophthalmus maximus Turbot Université de Nantes: HAL-UNIV-NANTES Aquaculture 495 602 610 |
institution |
Open Polar |
collection |
Université de Nantes: HAL-UNIV-NANTES |
op_collection_id |
ftunivnantes |
language |
English |
topic |
scophthalmus maximus growth molecular marker qtl validation candidate gene MAS [SDV]Life Sciences [q-bio] [SDV.GEN]Life Sciences [q-bio]/Genetics [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics [INFO]Computer Science [cs] |
spellingShingle |
scophthalmus maximus growth molecular marker qtl validation candidate gene MAS [SDV]Life Sciences [q-bio] [SDV.GEN]Life Sciences [q-bio]/Genetics [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics [INFO]Computer Science [cs] Sciara, A.A. Rodríguez-Ramilo, Silvia Teresa Hermida, M. Gómez-Tato, A. Fernandez, J. Bouza, C. Martinez, P. Validation of growth-related quantitative trait loci markers in turbot ( Scophthalmus maximus ) families as a step toward marker assisted selection |
topic_facet |
scophthalmus maximus growth molecular marker qtl validation candidate gene MAS [SDV]Life Sciences [q-bio] [SDV.GEN]Life Sciences [q-bio]/Genetics [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics [INFO]Computer Science [cs] |
description |
International audience Turbot (Scophthalmus maximus) is a valuable flatfish with current selection programs to increase growth rate in the fifth generation. Disentangling the genetic architecture of growth traits has biological and productive relevance. Growth-related quantitative trait loci (QTL) and associated markers have been previously reported in turbot. Here, we tested the performance of 39 markers associated with three growth-related traits (body weight (BW), body length (BL) and condition factor (FK)) in 18 families for their potential application in marker assisted selection (MAS) in this species. A cost-effective selective genotyping approach was developed by checking the statistical power of small samples at the extreme of the phenotypic distributions. Associations between growth traits and markers were performed using two statistical approaches (contingency chi-square tests and stepwise regression analysis) to identify the most robust set of markers. Twenty markers were detected by both methods, mostly linked to previously reported growth-related QTL and encompassing 11 linkage groups (LGs). The stepwise regression analysis revealed that a subset of seven markers explained nearly 40% and 60% of the phenotypic variation at genotypic and allelic level, respectively, for BW and BL. Seven markers for BW and BL and other two for FK showed association at population level, when all family data were pooled. Validated markers might be useful to go a step forward to improve growth performance through more refined MAS, and as physical anchors for identifying causal genes underpinning growth traits in turbot. |
author2 |
Universidade de Santiago de Compostela Spain (USC ) Consejo Nacional de Investigaciones Científicas y Técnicas Génétique Physiologie et Systèmes d'Elevage (GenPhySE ) Institut National de la Recherche Agronomique (INRA)-Ecole Nationale Vétérinaire de Toulouse (ENVT) Institut National Polytechnique (Toulouse) (Toulouse INP) Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP) Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-École nationale supérieure agronomique de Toulouse ENSAT Inst Nacl Invest & Tecnol Agr & Alimentaria Partenaires INRAE |
format |
Article in Journal/Newspaper |
author |
Sciara, A.A. Rodríguez-Ramilo, Silvia Teresa Hermida, M. Gómez-Tato, A. Fernandez, J. Bouza, C. Martinez, P. |
author_facet |
Sciara, A.A. Rodríguez-Ramilo, Silvia Teresa Hermida, M. Gómez-Tato, A. Fernandez, J. Bouza, C. Martinez, P. |
author_sort |
Sciara, A.A. |
title |
Validation of growth-related quantitative trait loci markers in turbot ( Scophthalmus maximus ) families as a step toward marker assisted selection |
title_short |
Validation of growth-related quantitative trait loci markers in turbot ( Scophthalmus maximus ) families as a step toward marker assisted selection |
title_full |
Validation of growth-related quantitative trait loci markers in turbot ( Scophthalmus maximus ) families as a step toward marker assisted selection |
title_fullStr |
Validation of growth-related quantitative trait loci markers in turbot ( Scophthalmus maximus ) families as a step toward marker assisted selection |
title_full_unstemmed |
Validation of growth-related quantitative trait loci markers in turbot ( Scophthalmus maximus ) families as a step toward marker assisted selection |
title_sort |
validation of growth-related quantitative trait loci markers in turbot ( scophthalmus maximus ) families as a step toward marker assisted selection |
publisher |
HAL CCSD |
publishDate |
2018 |
url |
https://hal.inrae.fr/hal-02628266 https://doi.org/10.1016/j.aquaculture.2018.06.010 |
genre |
Scophthalmus maximus Turbot |
genre_facet |
Scophthalmus maximus Turbot |
op_source |
ISSN: 0044-8486 Aquaculture https://hal.inrae.fr/hal-02628266 Aquaculture, 2018, 495, pp.602-610. ⟨10.1016/j.aquaculture.2018.06.010⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1016/j.aquaculture.2018.06.010 hal-02628266 https://hal.inrae.fr/hal-02628266 doi:10.1016/j.aquaculture.2018.06.010 PRODINRA: 442901 WOS: 000439123500071 |
op_doi |
https://doi.org/10.1016/j.aquaculture.2018.06.010 |
container_title |
Aquaculture |
container_volume |
495 |
container_start_page |
602 |
op_container_end_page |
610 |
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1766188877041631232 |