The highly variable microbiota associated to intestinal mucosa correlates with growth and hypoxia resistance of sea bass, Dicentrarchus labrax, submitted to different nutritional histories

• Published in: BMC Microbiology
• Main Authors: Gatesoupe, François-Joël, Huelvan, Christine, Le Bayon, Nicolas, Le Delliou, Hervé, Madec, Lauriane, Mouchel, Olivier, Quazuguel, Patrick, Mazurais, David, Zambonino-Infante, Jose-Luis
• Other Authors: Nutrition, Métabolisme, Aquaculture (NuMéA), Institut National de la Recherche Agronomique (INRA)-Université de Pau et des Pays de l'Adour (UPPA), Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER), Laboratoire des Sciences de l'Environnement Marin (LEMAR) (LEMAR), Institut de Recherche pour le Développement (IRD)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Université de Brest (UBO)-Institut Universitaire Européen de la Mer (IUEM), Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD)-Institut national des sciences de l'Univers (INSU - CNRS)-Université de Brest (UBO)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), European Project: 288925,EC:FP7:KBBE,FP7-KBBE-2011-5,ARRAINA(2012)
• Format: Article in Journal/Newspaper
• Language: English
• Published: HAL CCSD 2016
• Subjects: Host-microbe interaction; gut microbiota; glucose-metabolism; ACL; Physiological status; lactic-acid bacteria; vibrio-cholerae; fish-oil; Pyrosequencing; Alternative feed ingredients; atlantic salmon; Autochthonous bacteria; epithelial mucosa; rainbow-trout; salvelinus-alpinus l; 16S rRNA; vegetable-oils; [SDV.BA.MVSA]Life Sciences [q-bio]/Animal biology/Veterinary medicine and animal Health; [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology; [SDV.AEN]Life Sciences [q-bio]/Food and Nutrition; [SDE.BE]Environmental Sciences/Biodiversity and Ecology; Bray; Atlantic salmon; Salvelinus alpinus
• Online Access: https://hal.science/hal-01483197; https://hal.science/hal-01483197/document; https://hal.science/hal-01483197/file/document%283%29.pdf; https://doi.org/10.1186/s12866-016-0885-2

WOS:000387083300006 International audience Background: The better understanding of how intestinal microbiota interacts with fish health is one of the key to sustainable aquaculture development. The present experiment aimed at correlating active microbiota associated to intestinal mucosa with Specific Growth Rate (SGR) and Hypoxia Resistance Time (HRT) in European sea bass individuals submitted to different nutritional histories: the fish were fed either standard or unbalanced diets at first feeding, and then mixed before repeating the dietary challenge in a common garden approach at the juvenile stage.Results: A diet deficient in essential fatty acids (LH) lowered both SGR and HRT in sea bass, especially when the deficiency was already applied at first feeding. A protein-deficient diet with high starch supply (HG) reduced SGR to a lesser extent than LH, but it did not affect HRT. In overall average, 94 % of pyrosequencing reads corresponded to Proteobacteria, and the differences in Operational Taxonomy Units (OTUs) composition were mildly significant between experimental groups, mainly due to high individual variability. The highest and the lowest Bray-Curtis indices of intra-group similarity were observed in the two groups fed standard starter diet, and then mixed before the final dietary challenge with fish already exposed to the nutritional deficiency at first feeding (0.60 and 0.42 with diets HG and LH, respectively). Most noticeably, the median percentage of Escherichia-Shigella OTU\₁ was less in the group LH with standard starter diet. Disregarding the nutritional history of each individual, strong correlation appeared between (1) OTU richness and SGR, and (2) dominance index and HRT. The two physiological traits correlated also with the relative abundance of distinct OTUs (positive correlations: Pseudomonas sp. OTU\₃ and Herbaspirillum sp. OTU\₁0 with SGR, Paracoccus sp. OTU\₄ and Vibrio sp. OTU\₇ with HRT; negative correlation: Rhizobium sp. OTU\₉ with HRT).Conclusions: In sea bass, gut microbiota ...