Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi
We aimed to enhance understanding of the molecular diversity of arbuscular mycorrhizal fungi (AMF) by building a new global dataset targeting previously unstudied geographical areas. In total, we sampled 96 plant species from 25 sites that encompassed all continents except Antarctica. AMF in plant r...
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Online Access: | https://hal.science/hal-01190520 https://doi.org/10.1007/s00572-013-0482-2 |
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ftunivnantes:oai:HAL:hal-01190520v1 2023-05-15T13:59:27+02:00 Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi Oepik, Maarja Zobel, Martin Cantero, Juan J. Davison, John Facelli, Jose M. Hiiesalu, Inga Jairus, Teele Kalwij, Jesse M. Koorem, Kadri Leal, Miguel E. Liira, Jaan Metsis, Madis Neshataeva, Valentina Paal, Jaanus Phosri, Cherdchai Polme, Sergei Reier, Uelle Saks, Uelle Schimann, Heidy Thiery, Odile Vasar, Martti Moora, Mari Dept.Bot University of Tartu Dept Bot Dept Biol Agr, Fac Agron & Vet National University of Río Cuarto = Universidad Nacional de Río Cuarto (UNRC) Sch Earth & Environm Sci University of Adelaide Dept Biol University of Regina (UR) Dept Bio Albertine Rift Program Wildlife Conservat Soc Cent Africa Program Missouri Botanical Garden Ctr Biol Integrated Syst Tallinn University of Technology (TTÜ) Komarov Bot Inst Russian Academy of Agricultural Sciences (RAAS) Inst Res & Dev, Fac Sci & Technol, Microbiol Programme Pibulsongkram Rajabhat Univ Ecologie des forêts de Guyane (ECOFOG) Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Université des Antilles et de la Guyane (UAG)-AgroParisTech-Centre National de la Recherche Scientifique (CNRS) Estonian Science Foundation 9050, 9157, 7738 European Regional Development Fund (Center of Excellence FIBIR); Parrot project 14541QM Hubert Curien Partnership between France and Estonia; SF0180098s08 2013 https://hal.science/hal-01190520 https://doi.org/10.1007/s00572-013-0482-2 en eng HAL CCSD Springer Verlag info:eu-repo/semantics/altIdentifier/doi/10.1007/s00572-013-0482-2 hal-01190520 https://hal.science/hal-01190520 doi:10.1007/s00572-013-0482-2 PRODINRA: 206968 WOS: 000320329000008 ISSN: 0940-6360 EISSN: 1432-1890 Mycorrhiza https://hal.science/hal-01190520 Mycorrhiza, 2013, 23 (5), pp.411 - 430. ⟨10.1007/s00572-013-0482-2⟩ Diversity Fungal macroecology 454-sequencing Biogeography Database SPECIES LEVEL GLOMEROMYCOTA COMMUNITIES ECOSYSTEMS REVEALS ECOLOGY PHYLUM GENERA SCALE TAXA [SDV]Life Sciences [q-bio] info:eu-repo/semantics/article Journal articles 2013 ftunivnantes https://doi.org/10.1007/s00572-013-0482-2 2023-02-08T10:37:10Z We aimed to enhance understanding of the molecular diversity of arbuscular mycorrhizal fungi (AMF) by building a new global dataset targeting previously unstudied geographical areas. In total, we sampled 96 plant species from 25 sites that encompassed all continents except Antarctica. AMF in plant roots were detected by sequencing the nuclear SSU rRNA gene fragment using either cloning followed by Sanger sequencing or 454-sequencing. A total of 204 AMF phylogroups (virtual taxa, VT) were recorded, increasing the described number of Glomeromycota VT from 308 to 341 globally. Novel VT were detected from 21 sites; three novel but nevertheless widespread VT (Glomus spp. MO-G52, MO-G53, MO-G57) were recorded from six continents. The largest increases in regional VT number were recorded in previously little-studied Oceania and in the boreal and polar climatic zones - this study providing the first molecular data from the latter. Ordination revealed differences in AM fungal communities between different continents and climatic zones, suggesting that both biogeographic history and environmental conditions underlie the global variation of those communities. Our results show that a considerable proportion of Glomeromycota diversity has been recorded in many regions, though further large increases in richness can be expected in remaining unstudied areas. Article in Journal/Newspaper Antarc* Antarctica Université de Nantes: HAL-UNIV-NANTES Mycorrhiza 23 5 411 430 |
institution |
Open Polar |
collection |
Université de Nantes: HAL-UNIV-NANTES |
op_collection_id |
ftunivnantes |
language |
English |
topic |
Diversity Fungal macroecology 454-sequencing Biogeography Database SPECIES LEVEL GLOMEROMYCOTA COMMUNITIES ECOSYSTEMS REVEALS ECOLOGY PHYLUM GENERA SCALE TAXA [SDV]Life Sciences [q-bio] |
spellingShingle |
Diversity Fungal macroecology 454-sequencing Biogeography Database SPECIES LEVEL GLOMEROMYCOTA COMMUNITIES ECOSYSTEMS REVEALS ECOLOGY PHYLUM GENERA SCALE TAXA [SDV]Life Sciences [q-bio] Oepik, Maarja Zobel, Martin Cantero, Juan J. Davison, John Facelli, Jose M. Hiiesalu, Inga Jairus, Teele Kalwij, Jesse M. Koorem, Kadri Leal, Miguel E. Liira, Jaan Metsis, Madis Neshataeva, Valentina Paal, Jaanus Phosri, Cherdchai Polme, Sergei Reier, Uelle Saks, Uelle Schimann, Heidy Thiery, Odile Vasar, Martti Moora, Mari Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi |
topic_facet |
Diversity Fungal macroecology 454-sequencing Biogeography Database SPECIES LEVEL GLOMEROMYCOTA COMMUNITIES ECOSYSTEMS REVEALS ECOLOGY PHYLUM GENERA SCALE TAXA [SDV]Life Sciences [q-bio] |
description |
We aimed to enhance understanding of the molecular diversity of arbuscular mycorrhizal fungi (AMF) by building a new global dataset targeting previously unstudied geographical areas. In total, we sampled 96 plant species from 25 sites that encompassed all continents except Antarctica. AMF in plant roots were detected by sequencing the nuclear SSU rRNA gene fragment using either cloning followed by Sanger sequencing or 454-sequencing. A total of 204 AMF phylogroups (virtual taxa, VT) were recorded, increasing the described number of Glomeromycota VT from 308 to 341 globally. Novel VT were detected from 21 sites; three novel but nevertheless widespread VT (Glomus spp. MO-G52, MO-G53, MO-G57) were recorded from six continents. The largest increases in regional VT number were recorded in previously little-studied Oceania and in the boreal and polar climatic zones - this study providing the first molecular data from the latter. Ordination revealed differences in AM fungal communities between different continents and climatic zones, suggesting that both biogeographic history and environmental conditions underlie the global variation of those communities. Our results show that a considerable proportion of Glomeromycota diversity has been recorded in many regions, though further large increases in richness can be expected in remaining unstudied areas. |
author2 |
Dept.Bot University of Tartu Dept Bot Dept Biol Agr, Fac Agron & Vet National University of Río Cuarto = Universidad Nacional de Río Cuarto (UNRC) Sch Earth & Environm Sci University of Adelaide Dept Biol University of Regina (UR) Dept Bio Albertine Rift Program Wildlife Conservat Soc Cent Africa Program Missouri Botanical Garden Ctr Biol Integrated Syst Tallinn University of Technology (TTÜ) Komarov Bot Inst Russian Academy of Agricultural Sciences (RAAS) Inst Res & Dev, Fac Sci & Technol, Microbiol Programme Pibulsongkram Rajabhat Univ Ecologie des forêts de Guyane (ECOFOG) Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Université des Antilles et de la Guyane (UAG)-AgroParisTech-Centre National de la Recherche Scientifique (CNRS) Estonian Science Foundation 9050, 9157, 7738 European Regional Development Fund (Center of Excellence FIBIR); Parrot project 14541QM Hubert Curien Partnership between France and Estonia; SF0180098s08 |
format |
Article in Journal/Newspaper |
author |
Oepik, Maarja Zobel, Martin Cantero, Juan J. Davison, John Facelli, Jose M. Hiiesalu, Inga Jairus, Teele Kalwij, Jesse M. Koorem, Kadri Leal, Miguel E. Liira, Jaan Metsis, Madis Neshataeva, Valentina Paal, Jaanus Phosri, Cherdchai Polme, Sergei Reier, Uelle Saks, Uelle Schimann, Heidy Thiery, Odile Vasar, Martti Moora, Mari |
author_facet |
Oepik, Maarja Zobel, Martin Cantero, Juan J. Davison, John Facelli, Jose M. Hiiesalu, Inga Jairus, Teele Kalwij, Jesse M. Koorem, Kadri Leal, Miguel E. Liira, Jaan Metsis, Madis Neshataeva, Valentina Paal, Jaanus Phosri, Cherdchai Polme, Sergei Reier, Uelle Saks, Uelle Schimann, Heidy Thiery, Odile Vasar, Martti Moora, Mari |
author_sort |
Oepik, Maarja |
title |
Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi |
title_short |
Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi |
title_full |
Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi |
title_fullStr |
Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi |
title_full_unstemmed |
Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi |
title_sort |
global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi |
publisher |
HAL CCSD |
publishDate |
2013 |
url |
https://hal.science/hal-01190520 https://doi.org/10.1007/s00572-013-0482-2 |
genre |
Antarc* Antarctica |
genre_facet |
Antarc* Antarctica |
op_source |
ISSN: 0940-6360 EISSN: 1432-1890 Mycorrhiza https://hal.science/hal-01190520 Mycorrhiza, 2013, 23 (5), pp.411 - 430. ⟨10.1007/s00572-013-0482-2⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1007/s00572-013-0482-2 hal-01190520 https://hal.science/hal-01190520 doi:10.1007/s00572-013-0482-2 PRODINRA: 206968 WOS: 000320329000008 |
op_doi |
https://doi.org/10.1007/s00572-013-0482-2 |
container_title |
Mycorrhiza |
container_volume |
23 |
container_issue |
5 |
container_start_page |
411 |
op_container_end_page |
430 |
_version_ |
1766267991314399232 |