A methodological approach to identify cheap and accurate indicators for biodiversity assessment: application to grazing management and two grassland bird species

In response to environmental threats, numerous indicators have been developed to assess the impact of livestock farming systems on the environment. Some of them, notably those based on management practices have been reported to have low accuracy. This paper reports the results of a study aimed at as...

Full description

Bibliographic Details
Published in:Animal
Main Authors: Tichit, Muriel, Barbottin, Aude, Makowski, David
Other Authors: Sciences pour l'Action et le Développement : Activités, Produits, Territoires (SADAPT), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Agronomie
Format: Article in Journal/Newspaper
Language:English
Published: HAL CCSD 2010
Subjects:
Online Access:https://hal.science/hal-01173192
https://hal.science/hal-01173192/document
https://hal.science/hal-01173192/file/39884_20101108020833250_1.pdf
https://doi.org/10.1017/S1751731109991686
id ftunivnantes:oai:HAL:hal-01173192v1
record_format openpolar
spelling ftunivnantes:oai:HAL:hal-01173192v1 2023-05-15T18:42:36+02:00 A methodological approach to identify cheap and accurate indicators for biodiversity assessment: application to grazing management and two grassland bird species Tichit, Muriel Barbottin, Aude Makowski, David Sciences pour l'Action et le Développement : Activités, Produits, Territoires (SADAPT) Institut National de la Recherche Agronomique (INRA)-AgroParisTech Agronomie 2010 https://hal.science/hal-01173192 https://hal.science/hal-01173192/document https://hal.science/hal-01173192/file/39884_20101108020833250_1.pdf https://doi.org/10.1017/S1751731109991686 en eng HAL CCSD Published by Elsevier (since 2021) / Cambridge University Press (until 2020) info:eu-repo/semantics/altIdentifier/doi/10.1017/S1751731109991686 hal-01173192 https://hal.science/hal-01173192 https://hal.science/hal-01173192/document https://hal.science/hal-01173192/file/39884_20101108020833250_1.pdf doi:10.1017/S1751731109991686 PRODINRA: 39884 WOS: 000278046200002 info:eu-repo/semantics/OpenAccess ISSN: 1751-7311 EISSN: 1751-732X Animal https://hal.science/hal-01173192 Animal, 2010, 4 (6), pp.819-826. ⟨10.1017/S1751731109991686⟩ LIVESTOCK FARMING SYSTEM BAYESIAN MODEL AVERAGING MODEL SELECTION SENSITIVITY SPECIFICITY AGGICULTURE VETERINARY SCIENCE DAIRY & ANIMAL SCIENCE [SDV.SA.SPA]Life Sciences [q-bio]/Agricultural sciences/Animal production studies info:eu-repo/semantics/article Journal articles 2010 ftunivnantes https://doi.org/10.1017/S1751731109991686 2023-02-08T06:32:51Z In response to environmental threats, numerous indicators have been developed to assess the impact of livestock farming systems on the environment. Some of them, notably those based on management practices have been reported to have low accuracy. This paper reports the results of a study aimed at assessing whether accuracy can be increased at a reasonable cost by mixing individual indicators into models. We focused on proxy indicators representing an alternative to the direct impact measurement on two grassland bird species, the lapwing Vanellus vanellus and the redshank Tringa totanus. Models were developed using stepwise selection procedures or Bayesian model averaging (BMA). Sensitivity, specificity, and probability of correctly ranking fields (area under the curve, AUC) were estimated for each individual indicator or model from observational data measured on 252 grazed plots during 2 years. The cost of implementation of each model was computed as a function of the number and types of input variables. Among all management indicators, 50% had an AUC lower than or equal to 0.50 and thus were not better than a random decision. Independently of the statistical procedure, models combining management indicators were always more accurate than individual indicators for lapwings only. In redshanks, models based either on BMA or some selection procedures were non-informative. Higher accuracy could be reached, for both species, with model mixing management and habitat indicators. However, this increase in accuracy was also associated with an increase in model cost. Models derived by BMA were more expensive and slightly less accurate than those derived with selection procedures. Analysing trade-offs between accuracy and cost of indicators opens promising application perspectives as time consuming and expensive indicators are likely to be of low practical utility. Article in Journal/Newspaper Vanellus vanellus Université de Nantes: HAL-UNIV-NANTES Animal 4 6 819 826
institution Open Polar
collection Université de Nantes: HAL-UNIV-NANTES
op_collection_id ftunivnantes
language English
topic LIVESTOCK FARMING SYSTEM
BAYESIAN MODEL AVERAGING
MODEL SELECTION
SENSITIVITY
SPECIFICITY
AGGICULTURE
VETERINARY SCIENCE
DAIRY & ANIMAL SCIENCE
[SDV.SA.SPA]Life Sciences [q-bio]/Agricultural sciences/Animal production studies
spellingShingle LIVESTOCK FARMING SYSTEM
BAYESIAN MODEL AVERAGING
MODEL SELECTION
SENSITIVITY
SPECIFICITY
AGGICULTURE
VETERINARY SCIENCE
DAIRY & ANIMAL SCIENCE
[SDV.SA.SPA]Life Sciences [q-bio]/Agricultural sciences/Animal production studies
Tichit, Muriel
Barbottin, Aude
Makowski, David
A methodological approach to identify cheap and accurate indicators for biodiversity assessment: application to grazing management and two grassland bird species
topic_facet LIVESTOCK FARMING SYSTEM
BAYESIAN MODEL AVERAGING
MODEL SELECTION
SENSITIVITY
SPECIFICITY
AGGICULTURE
VETERINARY SCIENCE
DAIRY & ANIMAL SCIENCE
[SDV.SA.SPA]Life Sciences [q-bio]/Agricultural sciences/Animal production studies
description In response to environmental threats, numerous indicators have been developed to assess the impact of livestock farming systems on the environment. Some of them, notably those based on management practices have been reported to have low accuracy. This paper reports the results of a study aimed at assessing whether accuracy can be increased at a reasonable cost by mixing individual indicators into models. We focused on proxy indicators representing an alternative to the direct impact measurement on two grassland bird species, the lapwing Vanellus vanellus and the redshank Tringa totanus. Models were developed using stepwise selection procedures or Bayesian model averaging (BMA). Sensitivity, specificity, and probability of correctly ranking fields (area under the curve, AUC) were estimated for each individual indicator or model from observational data measured on 252 grazed plots during 2 years. The cost of implementation of each model was computed as a function of the number and types of input variables. Among all management indicators, 50% had an AUC lower than or equal to 0.50 and thus were not better than a random decision. Independently of the statistical procedure, models combining management indicators were always more accurate than individual indicators for lapwings only. In redshanks, models based either on BMA or some selection procedures were non-informative. Higher accuracy could be reached, for both species, with model mixing management and habitat indicators. However, this increase in accuracy was also associated with an increase in model cost. Models derived by BMA were more expensive and slightly less accurate than those derived with selection procedures. Analysing trade-offs between accuracy and cost of indicators opens promising application perspectives as time consuming and expensive indicators are likely to be of low practical utility.
author2 Sciences pour l'Action et le Développement : Activités, Produits, Territoires (SADAPT)
Institut National de la Recherche Agronomique (INRA)-AgroParisTech
Agronomie
format Article in Journal/Newspaper
author Tichit, Muriel
Barbottin, Aude
Makowski, David
author_facet Tichit, Muriel
Barbottin, Aude
Makowski, David
author_sort Tichit, Muriel
title A methodological approach to identify cheap and accurate indicators for biodiversity assessment: application to grazing management and two grassland bird species
title_short A methodological approach to identify cheap and accurate indicators for biodiversity assessment: application to grazing management and two grassland bird species
title_full A methodological approach to identify cheap and accurate indicators for biodiversity assessment: application to grazing management and two grassland bird species
title_fullStr A methodological approach to identify cheap and accurate indicators for biodiversity assessment: application to grazing management and two grassland bird species
title_full_unstemmed A methodological approach to identify cheap and accurate indicators for biodiversity assessment: application to grazing management and two grassland bird species
title_sort methodological approach to identify cheap and accurate indicators for biodiversity assessment: application to grazing management and two grassland bird species
publisher HAL CCSD
publishDate 2010
url https://hal.science/hal-01173192
https://hal.science/hal-01173192/document
https://hal.science/hal-01173192/file/39884_20101108020833250_1.pdf
https://doi.org/10.1017/S1751731109991686
genre Vanellus vanellus
genre_facet Vanellus vanellus
op_source ISSN: 1751-7311
EISSN: 1751-732X
Animal
https://hal.science/hal-01173192
Animal, 2010, 4 (6), pp.819-826. ⟨10.1017/S1751731109991686⟩
op_relation info:eu-repo/semantics/altIdentifier/doi/10.1017/S1751731109991686
hal-01173192
https://hal.science/hal-01173192
https://hal.science/hal-01173192/document
https://hal.science/hal-01173192/file/39884_20101108020833250_1.pdf
doi:10.1017/S1751731109991686
PRODINRA: 39884
WOS: 000278046200002
op_rights info:eu-repo/semantics/OpenAccess
op_doi https://doi.org/10.1017/S1751731109991686
container_title Animal
container_volume 4
container_issue 6
container_start_page 819
op_container_end_page 826
_version_ 1766232311964106752