Quantitative characterization of soil micro-aggregates : New opportunities from sub-micron resolution synchrotron X-ray microtomography

Soil microaggregates are the fundamental building block, at the micron scale, of the highly hierarchical structure of soils, and can exert a significant control on the local biological metabolism and microbial community partitioning. In this study we propose an analysis protocol for the morphometric...

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Published in:Geoderma
Main Authors: Voltolini, Marco, Taş, Neslihan, Wang, Shi, Brodie, Eoin L., Ajo-Franklin, Jonathan B.
Other Authors: M. Voltolini, N. Taş, S. Wang, E.L. Brodie, J.B. Ajo-Franklin
Format: Article in Journal/Newspaper
Language:English
Published: Elsevier 2017
Subjects:
Online Access:http://hdl.handle.net/2434/908386
https://doi.org/10.1016/j.geoderma.2017.06.005
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spelling ftunivmilanoair:oai:air.unimi.it:2434/908386 2024-02-11T10:02:29+01:00 Quantitative characterization of soil micro-aggregates : New opportunities from sub-micron resolution synchrotron X-ray microtomography Voltolini, Marco Taş, Neslihan Wang, Shi Brodie, Eoin L. Ajo-Franklin, Jonathan B. M. Voltolini N. Taş S. Wang E.L. Brodie J.B. Ajo-Franklin 2017 http://hdl.handle.net/2434/908386 https://doi.org/10.1016/j.geoderma.2017.06.005 eng eng Elsevier info:eu-repo/semantics/altIdentifier/wos/WOS:000408075900038 volume:305 firstpage:382 lastpage:393 numberofpages:12 journal:GEODERMA http://hdl.handle.net/2434/908386 doi:10.1016/j.geoderma.2017.06.005 info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85021845381 info:eu-repo/semantics/closedAccess Modeling Quantitative image analysi Soil microaggregate Synchrotron X-ray microCT Settore GEO/06 - Mineralogia Settore GEO/09 - Georisorse Miner.Appl.Mineral.-Petrogr.per l'amb.e i Beni Cul info:eu-repo/semantics/article 2017 ftunivmilanoair https://doi.org/10.1016/j.geoderma.2017.06.005 2024-01-16T23:35:35Z Soil microaggregates are the fundamental building block, at the micron scale, of the highly hierarchical structure of soils, and can exert a significant control on the local biological metabolism and microbial community partitioning. In this study we propose an analysis protocol for the morphometric characterization of complete soil microaggregates based on sub-micron resolution synchrotron X-ray microtomography. A comprehensive characterization of the aggregate morphology is the first step towards a complete characterization of the soil microaggregates, when trying to correlate morphometric parameters with physical and/or biological properties, or when building models (e.g., effective diffusivity, microbial distribution, etc.). We demonstrate our characterization approach on two single microaggregate samples from dramatically different soil environments: one from Kansas, primarily composed by inorganic particles, and one from Barrow (Alaska) dominated by plant fragments. A series of state-of-the-art morphometric analysis techniques have been employed providing quantitative results highlighting specific differences of the two samples. The role of the microstructure in a scenario microbial population development has been discussed and it has been found that the Barrow microaggregate seems to be more favorable, from a purely geometrical point of view, as also confirmed by a simple model presented in this work. The potential of this approach, when coupled with chemical and biological analysis for a fully comprehensive characterization of soil aggregates in the larger picture of enhanced biological activity, is evident. Article in Journal/Newspaper Barrow Alaska The University of Milan: Archivio Istituzionale della Ricerca (AIR) Geoderma 305 382 393
institution Open Polar
collection The University of Milan: Archivio Istituzionale della Ricerca (AIR)
op_collection_id ftunivmilanoair
language English
topic Modeling
Quantitative image analysi
Soil microaggregate
Synchrotron X-ray microCT
Settore GEO/06 - Mineralogia
Settore GEO/09 - Georisorse Miner.Appl.Mineral.-Petrogr.per l'amb.e i Beni Cul
spellingShingle Modeling
Quantitative image analysi
Soil microaggregate
Synchrotron X-ray microCT
Settore GEO/06 - Mineralogia
Settore GEO/09 - Georisorse Miner.Appl.Mineral.-Petrogr.per l'amb.e i Beni Cul
Voltolini, Marco
Taş, Neslihan
Wang, Shi
Brodie, Eoin L.
Ajo-Franklin, Jonathan B.
Quantitative characterization of soil micro-aggregates : New opportunities from sub-micron resolution synchrotron X-ray microtomography
topic_facet Modeling
Quantitative image analysi
Soil microaggregate
Synchrotron X-ray microCT
Settore GEO/06 - Mineralogia
Settore GEO/09 - Georisorse Miner.Appl.Mineral.-Petrogr.per l'amb.e i Beni Cul
description Soil microaggregates are the fundamental building block, at the micron scale, of the highly hierarchical structure of soils, and can exert a significant control on the local biological metabolism and microbial community partitioning. In this study we propose an analysis protocol for the morphometric characterization of complete soil microaggregates based on sub-micron resolution synchrotron X-ray microtomography. A comprehensive characterization of the aggregate morphology is the first step towards a complete characterization of the soil microaggregates, when trying to correlate morphometric parameters with physical and/or biological properties, or when building models (e.g., effective diffusivity, microbial distribution, etc.). We demonstrate our characterization approach on two single microaggregate samples from dramatically different soil environments: one from Kansas, primarily composed by inorganic particles, and one from Barrow (Alaska) dominated by plant fragments. A series of state-of-the-art morphometric analysis techniques have been employed providing quantitative results highlighting specific differences of the two samples. The role of the microstructure in a scenario microbial population development has been discussed and it has been found that the Barrow microaggregate seems to be more favorable, from a purely geometrical point of view, as also confirmed by a simple model presented in this work. The potential of this approach, when coupled with chemical and biological analysis for a fully comprehensive characterization of soil aggregates in the larger picture of enhanced biological activity, is evident.
author2 M. Voltolini
N. Taş
S. Wang
E.L. Brodie
J.B. Ajo-Franklin
format Article in Journal/Newspaper
author Voltolini, Marco
Taş, Neslihan
Wang, Shi
Brodie, Eoin L.
Ajo-Franklin, Jonathan B.
author_facet Voltolini, Marco
Taş, Neslihan
Wang, Shi
Brodie, Eoin L.
Ajo-Franklin, Jonathan B.
author_sort Voltolini, Marco
title Quantitative characterization of soil micro-aggregates : New opportunities from sub-micron resolution synchrotron X-ray microtomography
title_short Quantitative characterization of soil micro-aggregates : New opportunities from sub-micron resolution synchrotron X-ray microtomography
title_full Quantitative characterization of soil micro-aggregates : New opportunities from sub-micron resolution synchrotron X-ray microtomography
title_fullStr Quantitative characterization of soil micro-aggregates : New opportunities from sub-micron resolution synchrotron X-ray microtomography
title_full_unstemmed Quantitative characterization of soil micro-aggregates : New opportunities from sub-micron resolution synchrotron X-ray microtomography
title_sort quantitative characterization of soil micro-aggregates : new opportunities from sub-micron resolution synchrotron x-ray microtomography
publisher Elsevier
publishDate 2017
url http://hdl.handle.net/2434/908386
https://doi.org/10.1016/j.geoderma.2017.06.005
genre Barrow
Alaska
genre_facet Barrow
Alaska
op_relation info:eu-repo/semantics/altIdentifier/wos/WOS:000408075900038
volume:305
firstpage:382
lastpage:393
numberofpages:12
journal:GEODERMA
http://hdl.handle.net/2434/908386
doi:10.1016/j.geoderma.2017.06.005
info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85021845381
op_rights info:eu-repo/semantics/closedAccess
op_doi https://doi.org/10.1016/j.geoderma.2017.06.005
container_title Geoderma
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