Interspecific Gene Flow Shaped the Evolution of the Genus Canis
The evolutionary history of the wolf-like canids of the genus Canis has been heavily debated, especially regarding the number of distinct species and their relationships at the population and species level [1, 2, 3, 4, 5, 6]. We assembled a dataset of 48 resequenced genomes spanning all members of t...
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Online Access: | http://hdl.handle.net/10451/62003 https://doi.org/10.1016/j.cub.2018.08.041 |
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ftunivlisboa:oai:repositorio.ul.pt:10451/62003 2024-02-11T10:02:46+01:00 Interspecific Gene Flow Shaped the Evolution of the Genus Canis Gopalakrishnan, Shyam Sinding, Mikkel-Holger S. Ramos-Madrigal, Jazmín Niemann, Jonas Samaniego Castruita, Jose A. Vieira, Filipe G. Carøe, Christian Montero, Marc de Manuel Kuderna, Lukas Serres, Aitor González-Basallote, Víctor Manuel Liu, Yan-Hu Wang, Guo-Dong Marques-Bonet, Tomas Mirarab, Siavash Fernandes, C Gaubert, Philippe Koepfli, Klaus-Peter Budd, Jane Rueness, Eli Knispel Sillero, Claudio Heide-Jørgensen, Mads Peter Petersen, Bent Sicheritz-Ponten, Thomas Bachmann, Lutz Wiig, Øystein Hansen, Anders J. Gilbert, M. Thomas P. 2024-01-20T12:31:24Z http://hdl.handle.net/10451/62003 https://doi.org/10.1016/j.cub.2018.08.041 eng eng Elsevier Marie Skłodowska-Curie Actions grant 655732-WhereWolf Marie Skłodowska-Curie Actions grant 676154-ArchSci2020 NSFC grant 91531303 Danish National Research Foundation grant DNRF94 ERC Consolidator grant 681396-Extinction Genomics Universities of Oslo and Copenhagen for a PhD stipend MINECO/FEDER, UE, grant BFU2017-86471-P NIMH grant U01 MH106874 Obra Social “La Caixa,” and Secretaria d’Universitats i Recerca and CERCA Programme del Departament d’Economia i Coneixement de la Generalitat de Catalunya http://hdl.handle.net/10451/62003 doi:10.1016/j.cub.2018.08.041 openAccess http://creativecommons.org/licenses/by-nc-nd/4.0/ article 2024 ftunivlisboa https://doi.org/10.1016/j.cub.2018.08.041 2024-01-24T01:07:46Z The evolutionary history of the wolf-like canids of the genus Canis has been heavily debated, especially regarding the number of distinct species and their relationships at the population and species level [1, 2, 3, 4, 5, 6]. We assembled a dataset of 48 resequenced genomes spanning all members of the genus Canis except the black-backed and side-striped jackals, encompassing the global diversity of seven extant canid lineages. This includes eight new genomes, including the first resequenced Ethiopian wolf (Canis simensis), one dhole (Cuon alpinus), two East African hunting dogs (Lycaon pictus), two Eurasian golden jackals (Canis aureus), and two Middle Eastern gray wolves (Canis lupus). The relationships between the Ethiopian wolf, African golden wolf, and golden jackal were resolved. We highlight the role of interspecific hybridization in the evolution of this charismatic group. Specifically, we find gene flow between the ancestors of the dhole and African hunting dog and admixture between the gray wolf, coyote (Canis latrans), golden jackal, and African golden wolf. Additionally, we report gene flow from gray and Ethiopian wolves to the African golden wolf, suggesting that the African golden wolf originated through hybridization between these species. Finally, we hypothesize that coyotes and gray wolves carry genetic material derived from a “ghost” basal canid lineage. info:eu-repo/semantics/publishedVersion Article in Journal/Newspaper Canis lupus gray wolf Universidade de Lisboa: repositório.UL Current Biology 28 21 3441 3449.e5 |
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Universidade de Lisboa: repositório.UL |
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ftunivlisboa |
language |
English |
description |
The evolutionary history of the wolf-like canids of the genus Canis has been heavily debated, especially regarding the number of distinct species and their relationships at the population and species level [1, 2, 3, 4, 5, 6]. We assembled a dataset of 48 resequenced genomes spanning all members of the genus Canis except the black-backed and side-striped jackals, encompassing the global diversity of seven extant canid lineages. This includes eight new genomes, including the first resequenced Ethiopian wolf (Canis simensis), one dhole (Cuon alpinus), two East African hunting dogs (Lycaon pictus), two Eurasian golden jackals (Canis aureus), and two Middle Eastern gray wolves (Canis lupus). The relationships between the Ethiopian wolf, African golden wolf, and golden jackal were resolved. We highlight the role of interspecific hybridization in the evolution of this charismatic group. Specifically, we find gene flow between the ancestors of the dhole and African hunting dog and admixture between the gray wolf, coyote (Canis latrans), golden jackal, and African golden wolf. Additionally, we report gene flow from gray and Ethiopian wolves to the African golden wolf, suggesting that the African golden wolf originated through hybridization between these species. Finally, we hypothesize that coyotes and gray wolves carry genetic material derived from a “ghost” basal canid lineage. info:eu-repo/semantics/publishedVersion |
format |
Article in Journal/Newspaper |
author |
Gopalakrishnan, Shyam Sinding, Mikkel-Holger S. Ramos-Madrigal, Jazmín Niemann, Jonas Samaniego Castruita, Jose A. Vieira, Filipe G. Carøe, Christian Montero, Marc de Manuel Kuderna, Lukas Serres, Aitor González-Basallote, Víctor Manuel Liu, Yan-Hu Wang, Guo-Dong Marques-Bonet, Tomas Mirarab, Siavash Fernandes, C Gaubert, Philippe Koepfli, Klaus-Peter Budd, Jane Rueness, Eli Knispel Sillero, Claudio Heide-Jørgensen, Mads Peter Petersen, Bent Sicheritz-Ponten, Thomas Bachmann, Lutz Wiig, Øystein Hansen, Anders J. Gilbert, M. Thomas P. |
spellingShingle |
Gopalakrishnan, Shyam Sinding, Mikkel-Holger S. Ramos-Madrigal, Jazmín Niemann, Jonas Samaniego Castruita, Jose A. Vieira, Filipe G. Carøe, Christian Montero, Marc de Manuel Kuderna, Lukas Serres, Aitor González-Basallote, Víctor Manuel Liu, Yan-Hu Wang, Guo-Dong Marques-Bonet, Tomas Mirarab, Siavash Fernandes, C Gaubert, Philippe Koepfli, Klaus-Peter Budd, Jane Rueness, Eli Knispel Sillero, Claudio Heide-Jørgensen, Mads Peter Petersen, Bent Sicheritz-Ponten, Thomas Bachmann, Lutz Wiig, Øystein Hansen, Anders J. Gilbert, M. Thomas P. Interspecific Gene Flow Shaped the Evolution of the Genus Canis |
author_facet |
Gopalakrishnan, Shyam Sinding, Mikkel-Holger S. Ramos-Madrigal, Jazmín Niemann, Jonas Samaniego Castruita, Jose A. Vieira, Filipe G. Carøe, Christian Montero, Marc de Manuel Kuderna, Lukas Serres, Aitor González-Basallote, Víctor Manuel Liu, Yan-Hu Wang, Guo-Dong Marques-Bonet, Tomas Mirarab, Siavash Fernandes, C Gaubert, Philippe Koepfli, Klaus-Peter Budd, Jane Rueness, Eli Knispel Sillero, Claudio Heide-Jørgensen, Mads Peter Petersen, Bent Sicheritz-Ponten, Thomas Bachmann, Lutz Wiig, Øystein Hansen, Anders J. Gilbert, M. Thomas P. |
author_sort |
Gopalakrishnan, Shyam |
title |
Interspecific Gene Flow Shaped the Evolution of the Genus Canis |
title_short |
Interspecific Gene Flow Shaped the Evolution of the Genus Canis |
title_full |
Interspecific Gene Flow Shaped the Evolution of the Genus Canis |
title_fullStr |
Interspecific Gene Flow Shaped the Evolution of the Genus Canis |
title_full_unstemmed |
Interspecific Gene Flow Shaped the Evolution of the Genus Canis |
title_sort |
interspecific gene flow shaped the evolution of the genus canis |
publisher |
Elsevier |
publishDate |
2024 |
url |
http://hdl.handle.net/10451/62003 https://doi.org/10.1016/j.cub.2018.08.041 |
genre |
Canis lupus gray wolf |
genre_facet |
Canis lupus gray wolf |
op_relation |
Marie Skłodowska-Curie Actions grant 655732-WhereWolf Marie Skłodowska-Curie Actions grant 676154-ArchSci2020 NSFC grant 91531303 Danish National Research Foundation grant DNRF94 ERC Consolidator grant 681396-Extinction Genomics Universities of Oslo and Copenhagen for a PhD stipend MINECO/FEDER, UE, grant BFU2017-86471-P NIMH grant U01 MH106874 Obra Social “La Caixa,” and Secretaria d’Universitats i Recerca and CERCA Programme del Departament d’Economia i Coneixement de la Generalitat de Catalunya http://hdl.handle.net/10451/62003 doi:10.1016/j.cub.2018.08.041 |
op_rights |
openAccess http://creativecommons.org/licenses/by-nc-nd/4.0/ |
op_doi |
https://doi.org/10.1016/j.cub.2018.08.041 |
container_title |
Current Biology |
container_volume |
28 |
container_issue |
21 |
container_start_page |
3441 |
op_container_end_page |
3449.e5 |
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1790598823818559488 |