Size normalizing planktonic Foraminifera abundance in the water column

International audience Abstract Planktonic Foraminifera have been collected from the water column with different plankton sampling devices equipped with nets of various mesh sizes, which impedes direct comparison of observed quantifications. Here, we use data on the community size structure of plank...

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Published in:Limnology and Oceanography: Methods
Main Authors: Chaabane, Sonia, de Garidel‐thoron, Thibault, Giraud, Xavier, Meilland, Julie, Brummer, Geert‐jan, Jonkers, Lukas, Mortyn, P. Graham, Greco, Mattia, Casajus, Nicolas, Kucera, Michal, Sulpis, Olivier, Kuroyanagi, Azumi, Howa, Hélène, Beaugrand, Gregory, Schiebel, Ralf
Other Authors: Centre Européen de Recherche et d'Enseignement des Géosciences de l'Environnement (CEREGE), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Collège de France (CdF (institution))-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Fondation pour la recherche sur la Biodiversité (FRB), Center for Marine Environmental Sciences Bremen (MARUM), Universität Bremen, Universitat Autònoma de Barcelona = Autonomous University of Barcelona = Universidad Autónoma de Barcelona (UAB), Institute of Marine Sciences / Institut de Ciències del Mar Barcelona (ICM), Consejo Superior de Investigaciones Cientificas España = Spanish National Research Council Spain (CSIC), Tohoku University Sendai, Université d'Angers (UA), Laboratoire d’Océanologie et de Géosciences (LOG) - UMR 8187 (LOG), Institut national des sciences de l'Univers (INSU - CNRS)-Université du Littoral Côte d'Opale (ULCO)-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD France-Nord ), Max Planck Institute for Chemistry (MPIC), Max-Planck-Gesellschaft
Format: Article in Journal/Newspaper
Language:English
Published: HAL CCSD 2024
Subjects:
Online Access:https://hal.science/hal-04700539
https://hal.science/hal-04700539v1/document
https://hal.science/hal-04700539v1/file/Limnology%20Ocean%20Methods%20-%202024%20-%20Chaabane%20-%20Size%20normalizing%20planktonic%20Foraminifera%20abundance%20in%20the%20water%20column.pdf
https://doi.org/10.1002/lom3.10637
id ftunivlcoteopale:oai:HAL:hal-04700539v1
record_format openpolar
institution Open Polar
collection Université du Littoral Côte d'Opale portail
op_collection_id ftunivlcoteopale
language English
topic [PHYS]Physics [physics]
spellingShingle [PHYS]Physics [physics]
Chaabane, Sonia
de Garidel‐thoron, Thibault
Giraud, Xavier
Meilland, Julie
Brummer, Geert‐jan
Jonkers, Lukas
Mortyn, P. Graham
Greco, Mattia
Casajus, Nicolas
Kucera, Michal
Sulpis, Olivier
Kuroyanagi, Azumi
Howa, Hélène
Beaugrand, Gregory
Schiebel, Ralf
Size normalizing planktonic Foraminifera abundance in the water column
topic_facet [PHYS]Physics [physics]
description International audience Abstract Planktonic Foraminifera have been collected from the water column with different plankton sampling devices equipped with nets of various mesh sizes, which impedes direct comparison of observed quantifications. Here, we use data on the community size structure of planktonic Foraminifera to assess the impact of mesh size on the measured abundance (ind m −3 ) of planktonic Foraminifera. We use data from the FORCIS database (Chaabane et al., 2023, Scientific Data 10: 354) on the global ocean at different sampling depths over the past century. We find a global cumulative increase in abundance with size, which is best described using a Michaelis–Menten function. This function yields multiplication factors by which one size fraction can be normalized to any other size fraction equal to or larger than 100 μm. The resulting size normalization model is calibrated over a range of different depth intervals, and validated with an independent dataset from various depth ranges. The comparison to Berger's (1969, Deep. Res. Oceanogr. Abstr. 16: 1–24) equivalent catch approach shows a significant increase in the predictive skill of the model. The new size normalization scheme enables comparison of Foraminifera abundance data sampled with plankton nets of different mesh sizes, such as compiled in the FORCIS database. The correction methodology may be effectively employed for various other plankton groups such as diatoms and dinoflagellates.
author2 Centre Européen de Recherche et d'Enseignement des Géosciences de l'Environnement (CEREGE)
Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Collège de France (CdF (institution))-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Fondation pour la recherche sur la Biodiversité (FRB)
Center for Marine Environmental Sciences Bremen (MARUM)
Universität Bremen
Universitat Autònoma de Barcelona = Autonomous University of Barcelona = Universidad Autónoma de Barcelona (UAB)
Institute of Marine Sciences / Institut de Ciències del Mar Barcelona (ICM)
Consejo Superior de Investigaciones Cientificas España = Spanish National Research Council Spain (CSIC)
Tohoku University Sendai
Université d'Angers (UA)
Laboratoire d’Océanologie et de Géosciences (LOG) - UMR 8187 (LOG)
Institut national des sciences de l'Univers (INSU - CNRS)-Université du Littoral Côte d'Opale (ULCO)-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD France-Nord )
Max Planck Institute for Chemistry (MPIC)
Max-Planck-Gesellschaft
format Article in Journal/Newspaper
author Chaabane, Sonia
de Garidel‐thoron, Thibault
Giraud, Xavier
Meilland, Julie
Brummer, Geert‐jan
Jonkers, Lukas
Mortyn, P. Graham
Greco, Mattia
Casajus, Nicolas
Kucera, Michal
Sulpis, Olivier
Kuroyanagi, Azumi
Howa, Hélène
Beaugrand, Gregory
Schiebel, Ralf
author_facet Chaabane, Sonia
de Garidel‐thoron, Thibault
Giraud, Xavier
Meilland, Julie
Brummer, Geert‐jan
Jonkers, Lukas
Mortyn, P. Graham
Greco, Mattia
Casajus, Nicolas
Kucera, Michal
Sulpis, Olivier
Kuroyanagi, Azumi
Howa, Hélène
Beaugrand, Gregory
Schiebel, Ralf
author_sort Chaabane, Sonia
title Size normalizing planktonic Foraminifera abundance in the water column
title_short Size normalizing planktonic Foraminifera abundance in the water column
title_full Size normalizing planktonic Foraminifera abundance in the water column
title_fullStr Size normalizing planktonic Foraminifera abundance in the water column
title_full_unstemmed Size normalizing planktonic Foraminifera abundance in the water column
title_sort size normalizing planktonic foraminifera abundance in the water column
publisher HAL CCSD
publishDate 2024
url https://hal.science/hal-04700539
https://hal.science/hal-04700539v1/document
https://hal.science/hal-04700539v1/file/Limnology%20Ocean%20Methods%20-%202024%20-%20Chaabane%20-%20Size%20normalizing%20planktonic%20Foraminifera%20abundance%20in%20the%20water%20column.pdf
https://doi.org/10.1002/lom3.10637
genre Planktonic foraminifera
genre_facet Planktonic foraminifera
op_source ISSN: 1541-5856
Limnology and Oceanography: Methods
https://hal.science/hal-04700539
Limnology and Oceanography: Methods, 2024, ⟨10.1002/lom3.10637⟩
op_relation info:eu-repo/semantics/altIdentifier/doi/10.1002/lom3.10637
doi:10.1002/lom3.10637
op_rights http://creativecommons.org/licenses/by/
info:eu-repo/semantics/OpenAccess
op_doi https://doi.org/10.1002/lom3.10637
container_title Limnology and Oceanography: Methods
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spelling ftunivlcoteopale:oai:HAL:hal-04700539v1 2024-10-20T14:11:16+00:00 Size normalizing planktonic Foraminifera abundance in the water column Chaabane, Sonia de Garidel‐thoron, Thibault Giraud, Xavier Meilland, Julie Brummer, Geert‐jan Jonkers, Lukas Mortyn, P. Graham Greco, Mattia Casajus, Nicolas Kucera, Michal Sulpis, Olivier Kuroyanagi, Azumi Howa, Hélène Beaugrand, Gregory Schiebel, Ralf Centre Européen de Recherche et d'Enseignement des Géosciences de l'Environnement (CEREGE) Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Collège de France (CdF (institution))-Institut national des sciences de l'Univers (INSU - CNRS)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) Fondation pour la recherche sur la Biodiversité (FRB) Center for Marine Environmental Sciences Bremen (MARUM) Universität Bremen Universitat Autònoma de Barcelona = Autonomous University of Barcelona = Universidad Autónoma de Barcelona (UAB) Institute of Marine Sciences / Institut de Ciències del Mar Barcelona (ICM) Consejo Superior de Investigaciones Cientificas España = Spanish National Research Council Spain (CSIC) Tohoku University Sendai Université d'Angers (UA) Laboratoire d’Océanologie et de Géosciences (LOG) - UMR 8187 (LOG) Institut national des sciences de l'Univers (INSU - CNRS)-Université du Littoral Côte d'Opale (ULCO)-Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD France-Nord ) Max Planck Institute for Chemistry (MPIC) Max-Planck-Gesellschaft 2024-07-08 https://hal.science/hal-04700539 https://hal.science/hal-04700539v1/document https://hal.science/hal-04700539v1/file/Limnology%20Ocean%20Methods%20-%202024%20-%20Chaabane%20-%20Size%20normalizing%20planktonic%20Foraminifera%20abundance%20in%20the%20water%20column.pdf https://doi.org/10.1002/lom3.10637 en eng HAL CCSD Association for the Sciences of Limnology and Oceanography info:eu-repo/semantics/altIdentifier/doi/10.1002/lom3.10637 doi:10.1002/lom3.10637 http://creativecommons.org/licenses/by/ info:eu-repo/semantics/OpenAccess ISSN: 1541-5856 Limnology and Oceanography: Methods https://hal.science/hal-04700539 Limnology and Oceanography: Methods, 2024, ⟨10.1002/lom3.10637⟩ [PHYS]Physics [physics] info:eu-repo/semantics/article Journal articles 2024 ftunivlcoteopale https://doi.org/10.1002/lom3.10637 2024-09-26T14:11:30Z International audience Abstract Planktonic Foraminifera have been collected from the water column with different plankton sampling devices equipped with nets of various mesh sizes, which impedes direct comparison of observed quantifications. Here, we use data on the community size structure of planktonic Foraminifera to assess the impact of mesh size on the measured abundance (ind m −3 ) of planktonic Foraminifera. We use data from the FORCIS database (Chaabane et al., 2023, Scientific Data 10: 354) on the global ocean at different sampling depths over the past century. We find a global cumulative increase in abundance with size, which is best described using a Michaelis–Menten function. This function yields multiplication factors by which one size fraction can be normalized to any other size fraction equal to or larger than 100 μm. The resulting size normalization model is calibrated over a range of different depth intervals, and validated with an independent dataset from various depth ranges. The comparison to Berger's (1969, Deep. Res. Oceanogr. Abstr. 16: 1–24) equivalent catch approach shows a significant increase in the predictive skill of the model. The new size normalization scheme enables comparison of Foraminifera abundance data sampled with plankton nets of different mesh sizes, such as compiled in the FORCIS database. The correction methodology may be effectively employed for various other plankton groups such as diatoms and dinoflagellates. Article in Journal/Newspaper Planktonic foraminifera Université du Littoral Côte d'Opale portail Limnology and Oceanography: Methods