Screening for potential undiagnosed Gaucher disease patients : Utilisation of the Gaucher earlier diagnosis consensus point-scoring system (GED-C PSS) in conjunction with electronic health record data, tissue specimens, and small nucleotide polymorphism (SNP) genotype data available in Finnish biobanks

• Published in: Molecular Genetics and Metabolism Reports
• Main Authors: Pehrsson, Minja, Heikkinen, Hanna, Wartiovaara-Kautto, Ulla, Mäntylahti, Sampo, Bäckström, Pia, Lassenius, Mariann I., Uusi-Rauva, Kristiina, Carpen, Olli, Elomaa, Kaisa
• Other Authors: HUSLAB, Helsinki University Hospital Area, University of Helsinki, Bio Bank, Institute of Biotechnology, HUS Comprehensive Cancer Center, Clinicum, Hematologian yksikkö, Precision Cancer Pathology, Department of Pathology, Olli Mikael Carpen / Principal Investigator
• Format: Article in Journal/Newspaper
• Language: English
• Published: Elsevier Scientific Publ. Co 2022
• Subjects: Biobank study; Electronic health record data; Small nucleotide polymorphism chip genotype data; Gaucher disease; Gaucher earlier diagnosis consensus point-scoring system; GBA; AWARENESS; NEED; 3111 Biomedicine; 1184 Genetics; developmental biology; physiology; Northern Finland
• Online Access: http://hdl.handle.net/10138/350016

Background: Autosomal recessive Gaucher disease (GD) is likely underdiagnosed in many countries. Because the number of diagnosed GD patients in Finland is relatively low, and the true prevalence is currently not known, it was hypothesized that undiagnosed GD patients may exist in Finland. Our previous study demonstrated the applicability of Gaucher Earlier Diagnosis Consensus point-scoring system (GED-C PSS; Mehta et al., 2019) and Finnish biobank data and specimens in the automated point scoring of large populations. An indicative point -score range for Finnish GD patients was determined, but undiagnosed patients were not identified partly due to high number of high-score subjects in combination with a lack of suitable samples for diagnostics in the assessed biobank population. The current study extended the screening to another biobank and evaluated the feasibility of utilising the automated GED-C PSS in conjunction with small nucleotide polymorphism (SNP) chip genotype data from the FinnGen study of biobank sample donors in the identification of undiagnosed GD patients in Finland. Furthermore, the applicability of FFPE tissues and DNA restoration in the next-generation sequencing (NGS) of the GBA gene were tested. Methods: Previously diagnosed Finnish GD patients eligible to the study, and up to 45,100 sample donors in Helsinki Biobank (HBB) were point scored. The GED-C point scoring, adjusted to local data, was automated, but also partly manually verified for GD patients. The SNP chip genotype data for rare GBA variants was visually assessed. FFPE tissues of GD patients were obtained from HBB and Biobank Borealis of Northern Finland (BB). Results: Three previously diagnosed GD patients and one patient previously treated for GD-related features were included. A genetic diagnosis was confirmed for the patient treated for GD-related features. The GED-C point score of the GD patients was 12.5-22.5 in the current study. The score in eight Finnish GD patients of the previous and the current study is thus 6-22.5 ...