Multiscale mapping of plant functional groups and plant traits in the High Arctic using field spectroscopy, UAV imagery and Sentinel-2A data

The Arctic is warming twice as fast as the rest of the planet, leading to rapid changes in species composition and plant functional trait variation. Landscape-level maps of vegetation composition and trait distributions are required to expand spatially-limited plot studies, overcome sampling biases...

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Published in:Environmental Research Letters
Main Authors: Thomson, Eleanor R., Spiegel, Marcus P., Althuizen, Inge H. J., Bass, Polly, Chen, Shuli, Chmurzynski, Adam, Halbritter, Aud H., Henn, Jonathan J., Jonsdottir, Ingibjorg S., Klanderud, Kari, Li, Yaoqi, Maitner, Brian S., Michaletz, Sean T., Niittynen, Pekka, Roos, Ruben E., Telford, Richard J., Enquist, Brian J., Vandvik, Vigdis, Macias-Fauria, Marc, Malhi, Yadvinder
Other Authors: Department of Geosciences and Geography, Helsinki Institute of Sustainability Science (HELSUS), BioGeoClimate Modelling Lab, Geology (-2014)
Format: Article in Journal/Newspaper
Language:English
Published: IOP Publishing 2021
Subjects:
Online Access:http://hdl.handle.net/10138/329942
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spelling ftunivhelsihelda:oai:helda.helsinki.fi:10138/329942 2024-01-07T09:40:42+01:00 Multiscale mapping of plant functional groups and plant traits in the High Arctic using field spectroscopy, UAV imagery and Sentinel-2A data Thomson, Eleanor R. Spiegel, Marcus P. Althuizen, Inge H. J. Bass, Polly Chen, Shuli Chmurzynski, Adam Halbritter, Aud H. Henn, Jonathan J. Jonsdottir, Ingibjorg S. Klanderud, Kari Li, Yaoqi Maitner, Brian S. Michaletz, Sean T. Niittynen, Pekka Roos, Ruben E. Telford, Richard J. Enquist, Brian J. Vandvik, Vigdis Macias-Fauria, Marc Malhi, Yadvinder Department of Geosciences and Geography Helsinki Institute of Sustainability Science (HELSUS) BioGeoClimate Modelling Lab Geology (-2014) 2021-05-14T09:29:02Z 20 application/pdf http://hdl.handle.net/10138/329942 eng eng IOP Publishing 10.1088/1748-9326/abf464 The data collection was funded by a Norwegian Research Council INTPART Grant (Project Number: 274831), two SIU-foundation projects (UTF2013/10074 and HNP-2015/10037) and a Research Council of Norway Arctic Field Grant (Project Number: 282611, RiS: 10935). E R T is funded by NERC DTP award (NE/L002612/1). Y M is supported by the Jackson Foundation. M M-F was supported by a NERC IRF (NE/L011859/1). Thomson , E R , Spiegel , M P , Althuizen , I H J , Bass , P , Chen , S , Chmurzynski , A , Halbritter , A H , Henn , J J , Jonsdottir , I S , Klanderud , K , Li , Y , Maitner , B S , Michaletz , S T , Niittynen , P , Roos , R E , Telford , R J , Enquist , B J , Vandvik , V , Macias-Fauria , M & Malhi , Y 2021 , ' Multiscale mapping of plant functional groups and plant traits in the High Arctic using field spectroscopy, UAV imagery and Sentinel-2A data ' , Environmental Research Letters , vol. 16 , no. 5 , 055006 . https://doi.org/10.1088/1748-9326/abf464 ORCID: /0000-0002-7290-029X/work/93851829 9022c984-1b5c-439a-a8d7-f704db11437e http://hdl.handle.net/10138/329942 000642202900001 cc_by openAccess info:eu-repo/semantics/openAccess 1172 Environmental sciences Article publishedVersion 2021 ftunivhelsihelda 2023-12-14T00:08:15Z The Arctic is warming twice as fast as the rest of the planet, leading to rapid changes in species composition and plant functional trait variation. Landscape-level maps of vegetation composition and trait distributions are required to expand spatially-limited plot studies, overcome sampling biases associated with the most accessible research areas, and create baselines from which to monitor environmental change. Unmanned aerial vehicles (UAVs) have emerged as a low-cost method to generate high-resolution imagery and bridge the gap between fine-scale field studies and lower resolution satellite analyses. Here we used field spectroscopy data (400-2500 nm) and UAV multispectral imagery to test spectral methods of species identification and plant water and chemistry retrieval near Longyearbyen, Svalbard. Using the field spectroscopy data and Random Forest analysis, we were able to distinguish eight common High Arctic plant tundra species with 74% accuracy. Using partial least squares regression (PLSR), we were able to predict corresponding water, nitrogen, phosphorus and C:N values (r (2) = 0.61-0.88, RMSEmean = 12%-64%). We developed analogous models using UAV imagery (five bands: Blue, Green, Red, Red Edge and Near-Infrared) and scaled up the results across a 450 m long nutrient gradient located underneath a seabird colony. At the UAV level, we were able to map three plant functional groups (mosses, graminoids and dwarf shrubs) at 72% accuracy and generate maps of plant chemistry. Our maps show a clear marine-derived fertility gradient, mediated by geomorphology. We used the UAV results to explore two methods of upscaling plant water content to the wider landscape using Sentinel-2A imagery. Our results are pertinent for high resolution, low-cost mapping of the Arctic. Peer reviewed Article in Journal/Newspaper Arctic Arctic Longyearbyen Svalbard Tundra HELDA – University of Helsinki Open Repository Arctic Longyearbyen Svalbard Environmental Research Letters 16 5 055006
institution Open Polar
collection HELDA – University of Helsinki Open Repository
op_collection_id ftunivhelsihelda
language English
topic 1172 Environmental sciences
spellingShingle 1172 Environmental sciences
Thomson, Eleanor R.
Spiegel, Marcus P.
Althuizen, Inge H. J.
Bass, Polly
Chen, Shuli
Chmurzynski, Adam
Halbritter, Aud H.
Henn, Jonathan J.
Jonsdottir, Ingibjorg S.
Klanderud, Kari
Li, Yaoqi
Maitner, Brian S.
Michaletz, Sean T.
Niittynen, Pekka
Roos, Ruben E.
Telford, Richard J.
Enquist, Brian J.
Vandvik, Vigdis
Macias-Fauria, Marc
Malhi, Yadvinder
Multiscale mapping of plant functional groups and plant traits in the High Arctic using field spectroscopy, UAV imagery and Sentinel-2A data
topic_facet 1172 Environmental sciences
description The Arctic is warming twice as fast as the rest of the planet, leading to rapid changes in species composition and plant functional trait variation. Landscape-level maps of vegetation composition and trait distributions are required to expand spatially-limited plot studies, overcome sampling biases associated with the most accessible research areas, and create baselines from which to monitor environmental change. Unmanned aerial vehicles (UAVs) have emerged as a low-cost method to generate high-resolution imagery and bridge the gap between fine-scale field studies and lower resolution satellite analyses. Here we used field spectroscopy data (400-2500 nm) and UAV multispectral imagery to test spectral methods of species identification and plant water and chemistry retrieval near Longyearbyen, Svalbard. Using the field spectroscopy data and Random Forest analysis, we were able to distinguish eight common High Arctic plant tundra species with 74% accuracy. Using partial least squares regression (PLSR), we were able to predict corresponding water, nitrogen, phosphorus and C:N values (r (2) = 0.61-0.88, RMSEmean = 12%-64%). We developed analogous models using UAV imagery (five bands: Blue, Green, Red, Red Edge and Near-Infrared) and scaled up the results across a 450 m long nutrient gradient located underneath a seabird colony. At the UAV level, we were able to map three plant functional groups (mosses, graminoids and dwarf shrubs) at 72% accuracy and generate maps of plant chemistry. Our maps show a clear marine-derived fertility gradient, mediated by geomorphology. We used the UAV results to explore two methods of upscaling plant water content to the wider landscape using Sentinel-2A imagery. Our results are pertinent for high resolution, low-cost mapping of the Arctic. Peer reviewed
author2 Department of Geosciences and Geography
Helsinki Institute of Sustainability Science (HELSUS)
BioGeoClimate Modelling Lab
Geology (-2014)
format Article in Journal/Newspaper
author Thomson, Eleanor R.
Spiegel, Marcus P.
Althuizen, Inge H. J.
Bass, Polly
Chen, Shuli
Chmurzynski, Adam
Halbritter, Aud H.
Henn, Jonathan J.
Jonsdottir, Ingibjorg S.
Klanderud, Kari
Li, Yaoqi
Maitner, Brian S.
Michaletz, Sean T.
Niittynen, Pekka
Roos, Ruben E.
Telford, Richard J.
Enquist, Brian J.
Vandvik, Vigdis
Macias-Fauria, Marc
Malhi, Yadvinder
author_facet Thomson, Eleanor R.
Spiegel, Marcus P.
Althuizen, Inge H. J.
Bass, Polly
Chen, Shuli
Chmurzynski, Adam
Halbritter, Aud H.
Henn, Jonathan J.
Jonsdottir, Ingibjorg S.
Klanderud, Kari
Li, Yaoqi
Maitner, Brian S.
Michaletz, Sean T.
Niittynen, Pekka
Roos, Ruben E.
Telford, Richard J.
Enquist, Brian J.
Vandvik, Vigdis
Macias-Fauria, Marc
Malhi, Yadvinder
author_sort Thomson, Eleanor R.
title Multiscale mapping of plant functional groups and plant traits in the High Arctic using field spectroscopy, UAV imagery and Sentinel-2A data
title_short Multiscale mapping of plant functional groups and plant traits in the High Arctic using field spectroscopy, UAV imagery and Sentinel-2A data
title_full Multiscale mapping of plant functional groups and plant traits in the High Arctic using field spectroscopy, UAV imagery and Sentinel-2A data
title_fullStr Multiscale mapping of plant functional groups and plant traits in the High Arctic using field spectroscopy, UAV imagery and Sentinel-2A data
title_full_unstemmed Multiscale mapping of plant functional groups and plant traits in the High Arctic using field spectroscopy, UAV imagery and Sentinel-2A data
title_sort multiscale mapping of plant functional groups and plant traits in the high arctic using field spectroscopy, uav imagery and sentinel-2a data
publisher IOP Publishing
publishDate 2021
url http://hdl.handle.net/10138/329942
geographic Arctic
Longyearbyen
Svalbard
geographic_facet Arctic
Longyearbyen
Svalbard
genre Arctic
Arctic
Longyearbyen
Svalbard
Tundra
genre_facet Arctic
Arctic
Longyearbyen
Svalbard
Tundra
op_relation 10.1088/1748-9326/abf464
The data collection was funded by a Norwegian Research Council INTPART Grant (Project Number: 274831), two SIU-foundation projects (UTF2013/10074 and HNP-2015/10037) and a Research Council of Norway Arctic Field Grant (Project Number: 282611, RiS: 10935). E R T is funded by NERC DTP award (NE/L002612/1). Y M is supported by the Jackson Foundation. M M-F was supported by a NERC IRF (NE/L011859/1).
Thomson , E R , Spiegel , M P , Althuizen , I H J , Bass , P , Chen , S , Chmurzynski , A , Halbritter , A H , Henn , J J , Jonsdottir , I S , Klanderud , K , Li , Y , Maitner , B S , Michaletz , S T , Niittynen , P , Roos , R E , Telford , R J , Enquist , B J , Vandvik , V , Macias-Fauria , M & Malhi , Y 2021 , ' Multiscale mapping of plant functional groups and plant traits in the High Arctic using field spectroscopy, UAV imagery and Sentinel-2A data ' , Environmental Research Letters , vol. 16 , no. 5 , 055006 . https://doi.org/10.1088/1748-9326/abf464
ORCID: /0000-0002-7290-029X/work/93851829
9022c984-1b5c-439a-a8d7-f704db11437e
http://hdl.handle.net/10138/329942
000642202900001
op_rights cc_by
openAccess
info:eu-repo/semantics/openAccess
container_title Environmental Research Letters
container_volume 16
container_issue 5
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