A migration-associated supergene reveals loss of biocomplexity in Atlantic cod
Chromosome structural variation may underpin ecologically important intraspecific diversity by reducing recombination within supergenes containing linked, coadapted alleles. Here, we confirm that an ancient chromosomal rearrangement is strongly associated with migratory phenotype and individual gene...
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ftunivhelsihelda:oai:helda.helsinki.fi:10138/304305 2024-01-07T09:42:08+01:00 A migration-associated supergene reveals loss of biocomplexity in Atlantic cod Kess, Tony Bentzen, Paul Lehnert, Sarah J. Sylvester, Emma V.A. Lien, Sigbjorn Kent, Matthew P. Sinclair-Waters, Marion Morris, Corey J. Regular, Paul Fairweather, Robert Bradbury, Ian R. Evolution, Conservation, and Genomics External Funding 2019-08-07T07:38:01Z 8 application/pdf http://hdl.handle.net/10138/304305 eng eng American Association for the Advancement of Science (AAAS) 10.1126/sciadv.aav2461 Kess , T , Bentzen , P , Lehnert , S J , Sylvester , E V A , Lien , S , Kent , M P , Sinclair-Waters , M , Morris , C J , Regular , P , Fairweather , R & Bradbury , I R 2019 , ' A migration-associated supergene reveals loss of biocomplexity in Atlantic cod ' , Science Advances , vol. 5 , no. 6 , 2461 . https://doi.org/10.1126/sciadv.aav2461 ORCID: /0000-0001-7371-4547/work/60408043 85068128087 cbe7cde8-332e-4573-aa4f-1049030e5c89 http://hdl.handle.net/10138/304305 000473798500021 cc_by openAccess info:eu-repo/semantics/openAccess 1184 Genetics developmental biology physiology EFFECTIVE POPULATION-SIZE LINKAGE DISEQUILIBRIUM SELECTIVE SWEEPS GADUS-MORHUA R PACKAGE EVOLUTION INVERSIONS DIVERGENCE SCANS CONSEQUENCES Article publishedVersion 2019 ftunivhelsihelda 2023-12-14T00:03:03Z Chromosome structural variation may underpin ecologically important intraspecific diversity by reducing recombination within supergenes containing linked, coadapted alleles. Here, we confirm that an ancient chromosomal rearrangement is strongly associated with migratory phenotype and individual genetic structure in Atlantic cod (Gadus morhua) across the Northwest Atlantic. We reconstruct trends in effective population size over the last century and reveal declines in effective population size matching onset of industrialized harvest (after 1950). We find different demographic trajectories between individuals homozygous for the chromosomal rearrangement relative to heterozygous or homozygous individuals for the noninverted haplotype, suggesting different selective histories across the past 150 years. These results illustrate how chromosomal structural diversity can mediate fine-scale genetic, phenotypic, and demographic variation in a highly connected marine species and show how overfishing may have led to loss of biocomplexity within Northern cod stock. Peer reviewed Article in Journal/Newspaper atlantic cod Gadus morhua Northwest Atlantic HELDA – University of Helsinki Open Repository Science Advances 5 6 eaav2461 |
institution |
Open Polar |
collection |
HELDA – University of Helsinki Open Repository |
op_collection_id |
ftunivhelsihelda |
language |
English |
topic |
1184 Genetics developmental biology physiology EFFECTIVE POPULATION-SIZE LINKAGE DISEQUILIBRIUM SELECTIVE SWEEPS GADUS-MORHUA R PACKAGE EVOLUTION INVERSIONS DIVERGENCE SCANS CONSEQUENCES |
spellingShingle |
1184 Genetics developmental biology physiology EFFECTIVE POPULATION-SIZE LINKAGE DISEQUILIBRIUM SELECTIVE SWEEPS GADUS-MORHUA R PACKAGE EVOLUTION INVERSIONS DIVERGENCE SCANS CONSEQUENCES Kess, Tony Bentzen, Paul Lehnert, Sarah J. Sylvester, Emma V.A. Lien, Sigbjorn Kent, Matthew P. Sinclair-Waters, Marion Morris, Corey J. Regular, Paul Fairweather, Robert Bradbury, Ian R. A migration-associated supergene reveals loss of biocomplexity in Atlantic cod |
topic_facet |
1184 Genetics developmental biology physiology EFFECTIVE POPULATION-SIZE LINKAGE DISEQUILIBRIUM SELECTIVE SWEEPS GADUS-MORHUA R PACKAGE EVOLUTION INVERSIONS DIVERGENCE SCANS CONSEQUENCES |
description |
Chromosome structural variation may underpin ecologically important intraspecific diversity by reducing recombination within supergenes containing linked, coadapted alleles. Here, we confirm that an ancient chromosomal rearrangement is strongly associated with migratory phenotype and individual genetic structure in Atlantic cod (Gadus morhua) across the Northwest Atlantic. We reconstruct trends in effective population size over the last century and reveal declines in effective population size matching onset of industrialized harvest (after 1950). We find different demographic trajectories between individuals homozygous for the chromosomal rearrangement relative to heterozygous or homozygous individuals for the noninverted haplotype, suggesting different selective histories across the past 150 years. These results illustrate how chromosomal structural diversity can mediate fine-scale genetic, phenotypic, and demographic variation in a highly connected marine species and show how overfishing may have led to loss of biocomplexity within Northern cod stock. Peer reviewed |
author2 |
Evolution, Conservation, and Genomics External Funding |
format |
Article in Journal/Newspaper |
author |
Kess, Tony Bentzen, Paul Lehnert, Sarah J. Sylvester, Emma V.A. Lien, Sigbjorn Kent, Matthew P. Sinclair-Waters, Marion Morris, Corey J. Regular, Paul Fairweather, Robert Bradbury, Ian R. |
author_facet |
Kess, Tony Bentzen, Paul Lehnert, Sarah J. Sylvester, Emma V.A. Lien, Sigbjorn Kent, Matthew P. Sinclair-Waters, Marion Morris, Corey J. Regular, Paul Fairweather, Robert Bradbury, Ian R. |
author_sort |
Kess, Tony |
title |
A migration-associated supergene reveals loss of biocomplexity in Atlantic cod |
title_short |
A migration-associated supergene reveals loss of biocomplexity in Atlantic cod |
title_full |
A migration-associated supergene reveals loss of biocomplexity in Atlantic cod |
title_fullStr |
A migration-associated supergene reveals loss of biocomplexity in Atlantic cod |
title_full_unstemmed |
A migration-associated supergene reveals loss of biocomplexity in Atlantic cod |
title_sort |
migration-associated supergene reveals loss of biocomplexity in atlantic cod |
publisher |
American Association for the Advancement of Science (AAAS) |
publishDate |
2019 |
url |
http://hdl.handle.net/10138/304305 |
genre |
atlantic cod Gadus morhua Northwest Atlantic |
genre_facet |
atlantic cod Gadus morhua Northwest Atlantic |
op_relation |
10.1126/sciadv.aav2461 Kess , T , Bentzen , P , Lehnert , S J , Sylvester , E V A , Lien , S , Kent , M P , Sinclair-Waters , M , Morris , C J , Regular , P , Fairweather , R & Bradbury , I R 2019 , ' A migration-associated supergene reveals loss of biocomplexity in Atlantic cod ' , Science Advances , vol. 5 , no. 6 , 2461 . https://doi.org/10.1126/sciadv.aav2461 ORCID: /0000-0001-7371-4547/work/60408043 85068128087 cbe7cde8-332e-4573-aa4f-1049030e5c89 http://hdl.handle.net/10138/304305 000473798500021 |
op_rights |
cc_by openAccess info:eu-repo/semantics/openAccess |
container_title |
Science Advances |
container_volume |
5 |
container_issue |
6 |
container_start_page |
eaav2461 |
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1787423045781028864 |