Number of differentially expressed genes (DEGs) by DESeq2.
In the circadian series the different sampling points were compared to either 10:00, 02:00, 18:00 or an altering control and the number of DEGs are listed. The table also include the upregulated or downregulated DEGs from the analyzes within a light stimulation (02:00 vs 18:00) and comparing differe...
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ftunivfreestate:oai:figshare.com:article/21711963 2023-05-15T15:32:17+02:00 Number of differentially expressed genes (DEGs) by DESeq2. Mariann Eilertsen (11502317) David W. P. Dolan (14247792) Charlotte M. Bolton (11780345) Rita Karlsen (13025421) Wayne I. L. Davies (8028890) Rolf B. Edvardsen (6913946) Tomasz Furmanek (283506) Harald Sveier (8218770) Herve Migaud (308426) Jon Vidar Helvik (8028887) 2022-12-12T18:22:53Z https://doi.org/10.1371/journal.pgen.1010529.s013 unknown https://figshare.com/articles/dataset/Number_of_differentially_expressed_genes_DEGs_by_DESeq2_/21711963 doi:10.1371/journal.pgen.1010529.s013 CC BY 4.0 CC-BY Microbiology Cell Biology Genetics Molecular Biology Neuroscience Physiology Ecology Developmental Biology Inorganic Chemistry Mental Health Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified salmo salar </ atlantic salmon (< complex photoreceptive system photoperiod </ p div >< p early developmental stages two clock genes several clock genes differing light conditions developing teleost prior circadian profile showed different light conditions constant white light constant conditions circadian profile clock genes white light light conditions constant light significantly different results showed present prior photoreceptive capacity developmental series expressed early early development light environment light condition green light many genes genes related genes associated transcriptomic response transcriptome profile study implies significantly cycling seasonal changes poorly differentiated Dataset 2022 ftunivfreestate https://doi.org/10.1371/journal.pgen.1010529.s013 2022-12-16T00:33:51Z In the circadian series the different sampling points were compared to either 10:00, 02:00, 18:00 or an altering control and the number of DEGs are listed. The table also include the upregulated or downregulated DEGs from the analyzes within a light stimulation (02:00 vs 18:00) and comparing different light conditions to DD, LL or LDM at 690 dd (shown in Fig 3 ). (XLSX) Dataset Atlantic salmon Salmo salar KovsieScholar Repository (University of the Free State - UFS UV) |
institution |
Open Polar |
collection |
KovsieScholar Repository (University of the Free State - UFS UV) |
op_collection_id |
ftunivfreestate |
language |
unknown |
topic |
Microbiology Cell Biology Genetics Molecular Biology Neuroscience Physiology Ecology Developmental Biology Inorganic Chemistry Mental Health Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified salmo salar </ atlantic salmon (< complex photoreceptive system photoperiod </ p div >< p early developmental stages two clock genes several clock genes differing light conditions developing teleost prior circadian profile showed different light conditions constant white light constant conditions circadian profile clock genes white light light conditions constant light significantly different results showed present prior photoreceptive capacity developmental series expressed early early development light environment light condition green light many genes genes related genes associated transcriptomic response transcriptome profile study implies significantly cycling seasonal changes poorly differentiated |
spellingShingle |
Microbiology Cell Biology Genetics Molecular Biology Neuroscience Physiology Ecology Developmental Biology Inorganic Chemistry Mental Health Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified salmo salar </ atlantic salmon (< complex photoreceptive system photoperiod </ p div >< p early developmental stages two clock genes several clock genes differing light conditions developing teleost prior circadian profile showed different light conditions constant white light constant conditions circadian profile clock genes white light light conditions constant light significantly different results showed present prior photoreceptive capacity developmental series expressed early early development light environment light condition green light many genes genes related genes associated transcriptomic response transcriptome profile study implies significantly cycling seasonal changes poorly differentiated Mariann Eilertsen (11502317) David W. P. Dolan (14247792) Charlotte M. Bolton (11780345) Rita Karlsen (13025421) Wayne I. L. Davies (8028890) Rolf B. Edvardsen (6913946) Tomasz Furmanek (283506) Harald Sveier (8218770) Herve Migaud (308426) Jon Vidar Helvik (8028887) Number of differentially expressed genes (DEGs) by DESeq2. |
topic_facet |
Microbiology Cell Biology Genetics Molecular Biology Neuroscience Physiology Ecology Developmental Biology Inorganic Chemistry Mental Health Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified salmo salar </ atlantic salmon (< complex photoreceptive system photoperiod </ p div >< p early developmental stages two clock genes several clock genes differing light conditions developing teleost prior circadian profile showed different light conditions constant white light constant conditions circadian profile clock genes white light light conditions constant light significantly different results showed present prior photoreceptive capacity developmental series expressed early early development light environment light condition green light many genes genes related genes associated transcriptomic response transcriptome profile study implies significantly cycling seasonal changes poorly differentiated |
description |
In the circadian series the different sampling points were compared to either 10:00, 02:00, 18:00 or an altering control and the number of DEGs are listed. The table also include the upregulated or downregulated DEGs from the analyzes within a light stimulation (02:00 vs 18:00) and comparing different light conditions to DD, LL or LDM at 690 dd (shown in Fig 3 ). (XLSX) |
format |
Dataset |
author |
Mariann Eilertsen (11502317) David W. P. Dolan (14247792) Charlotte M. Bolton (11780345) Rita Karlsen (13025421) Wayne I. L. Davies (8028890) Rolf B. Edvardsen (6913946) Tomasz Furmanek (283506) Harald Sveier (8218770) Herve Migaud (308426) Jon Vidar Helvik (8028887) |
author_facet |
Mariann Eilertsen (11502317) David W. P. Dolan (14247792) Charlotte M. Bolton (11780345) Rita Karlsen (13025421) Wayne I. L. Davies (8028890) Rolf B. Edvardsen (6913946) Tomasz Furmanek (283506) Harald Sveier (8218770) Herve Migaud (308426) Jon Vidar Helvik (8028887) |
author_sort |
Mariann Eilertsen (11502317) |
title |
Number of differentially expressed genes (DEGs) by DESeq2. |
title_short |
Number of differentially expressed genes (DEGs) by DESeq2. |
title_full |
Number of differentially expressed genes (DEGs) by DESeq2. |
title_fullStr |
Number of differentially expressed genes (DEGs) by DESeq2. |
title_full_unstemmed |
Number of differentially expressed genes (DEGs) by DESeq2. |
title_sort |
number of differentially expressed genes (degs) by deseq2. |
publishDate |
2022 |
url |
https://doi.org/10.1371/journal.pgen.1010529.s013 |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_relation |
https://figshare.com/articles/dataset/Number_of_differentially_expressed_genes_DEGs_by_DESeq2_/21711963 doi:10.1371/journal.pgen.1010529.s013 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1371/journal.pgen.1010529.s013 |
_version_ |
1766362807384670208 |