Number of differentially expressed genes (DEGs) by DESeq2.

In the circadian series the different sampling points were compared to either 10:00, 02:00, 18:00 or an altering control and the number of DEGs are listed. The table also include the upregulated or downregulated DEGs from the analyzes within a light stimulation (02:00 vs 18:00) and comparing differe...

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Main Authors: Mariann Eilertsen (11502317), David W. P. Dolan (14247792), Charlotte M. Bolton (11780345), Rita Karlsen (13025421), Wayne I. L. Davies (8028890), Rolf B. Edvardsen (6913946), Tomasz Furmanek (283506), Harald Sveier (8218770), Herve Migaud (308426), Jon Vidar Helvik (8028887)
Format: Dataset
Language:unknown
Published: 2022
Subjects:
Online Access:https://doi.org/10.1371/journal.pgen.1010529.s013
id ftunivfreestate:oai:figshare.com:article/21711963
record_format openpolar
spelling ftunivfreestate:oai:figshare.com:article/21711963 2023-05-15T15:32:17+02:00 Number of differentially expressed genes (DEGs) by DESeq2. Mariann Eilertsen (11502317) David W. P. Dolan (14247792) Charlotte M. Bolton (11780345) Rita Karlsen (13025421) Wayne I. L. Davies (8028890) Rolf B. Edvardsen (6913946) Tomasz Furmanek (283506) Harald Sveier (8218770) Herve Migaud (308426) Jon Vidar Helvik (8028887) 2022-12-12T18:22:53Z https://doi.org/10.1371/journal.pgen.1010529.s013 unknown https://figshare.com/articles/dataset/Number_of_differentially_expressed_genes_DEGs_by_DESeq2_/21711963 doi:10.1371/journal.pgen.1010529.s013 CC BY 4.0 CC-BY Microbiology Cell Biology Genetics Molecular Biology Neuroscience Physiology Ecology Developmental Biology Inorganic Chemistry Mental Health Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified salmo salar </ atlantic salmon (< complex photoreceptive system photoperiod </ p div >< p early developmental stages two clock genes several clock genes differing light conditions developing teleost prior circadian profile showed different light conditions constant white light constant conditions circadian profile clock genes white light light conditions constant light significantly different results showed present prior photoreceptive capacity developmental series expressed early early development light environment light condition green light many genes genes related genes associated transcriptomic response transcriptome profile study implies significantly cycling seasonal changes poorly differentiated Dataset 2022 ftunivfreestate https://doi.org/10.1371/journal.pgen.1010529.s013 2022-12-16T00:33:51Z In the circadian series the different sampling points were compared to either 10:00, 02:00, 18:00 or an altering control and the number of DEGs are listed. The table also include the upregulated or downregulated DEGs from the analyzes within a light stimulation (02:00 vs 18:00) and comparing different light conditions to DD, LL or LDM at 690 dd (shown in Fig 3 ). (XLSX) Dataset Atlantic salmon Salmo salar KovsieScholar Repository (University of the Free State - UFS UV)
institution Open Polar
collection KovsieScholar Repository (University of the Free State - UFS UV)
op_collection_id ftunivfreestate
language unknown
topic Microbiology
Cell Biology
Genetics
Molecular Biology
Neuroscience
Physiology
Ecology
Developmental Biology
Inorganic Chemistry
Mental Health
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
salmo salar </
atlantic salmon (<
complex photoreceptive system
photoperiod </ p
div >< p
early developmental stages
two clock genes
several clock genes
differing light conditions
developing teleost prior
circadian profile showed
different light conditions
constant white light
constant conditions
circadian profile
clock genes
white light
light conditions
constant light
significantly different
results showed
present prior
photoreceptive capacity
developmental series
expressed early
early development
light environment
light condition
green light
many genes
genes related
genes associated
transcriptomic response
transcriptome profile
study implies
significantly cycling
seasonal changes
poorly differentiated
spellingShingle Microbiology
Cell Biology
Genetics
Molecular Biology
Neuroscience
Physiology
Ecology
Developmental Biology
Inorganic Chemistry
Mental Health
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
salmo salar </
atlantic salmon (<
complex photoreceptive system
photoperiod </ p
div >< p
early developmental stages
two clock genes
several clock genes
differing light conditions
developing teleost prior
circadian profile showed
different light conditions
constant white light
constant conditions
circadian profile
clock genes
white light
light conditions
constant light
significantly different
results showed
present prior
photoreceptive capacity
developmental series
expressed early
early development
light environment
light condition
green light
many genes
genes related
genes associated
transcriptomic response
transcriptome profile
study implies
significantly cycling
seasonal changes
poorly differentiated
Mariann Eilertsen (11502317)
David W. P. Dolan (14247792)
Charlotte M. Bolton (11780345)
Rita Karlsen (13025421)
Wayne I. L. Davies (8028890)
Rolf B. Edvardsen (6913946)
Tomasz Furmanek (283506)
Harald Sveier (8218770)
Herve Migaud (308426)
Jon Vidar Helvik (8028887)
Number of differentially expressed genes (DEGs) by DESeq2.
topic_facet Microbiology
Cell Biology
Genetics
Molecular Biology
Neuroscience
Physiology
Ecology
Developmental Biology
Inorganic Chemistry
Mental Health
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
salmo salar </
atlantic salmon (<
complex photoreceptive system
photoperiod </ p
div >< p
early developmental stages
two clock genes
several clock genes
differing light conditions
developing teleost prior
circadian profile showed
different light conditions
constant white light
constant conditions
circadian profile
clock genes
white light
light conditions
constant light
significantly different
results showed
present prior
photoreceptive capacity
developmental series
expressed early
early development
light environment
light condition
green light
many genes
genes related
genes associated
transcriptomic response
transcriptome profile
study implies
significantly cycling
seasonal changes
poorly differentiated
description In the circadian series the different sampling points were compared to either 10:00, 02:00, 18:00 or an altering control and the number of DEGs are listed. The table also include the upregulated or downregulated DEGs from the analyzes within a light stimulation (02:00 vs 18:00) and comparing different light conditions to DD, LL or LDM at 690 dd (shown in Fig 3 ). (XLSX)
format Dataset
author Mariann Eilertsen (11502317)
David W. P. Dolan (14247792)
Charlotte M. Bolton (11780345)
Rita Karlsen (13025421)
Wayne I. L. Davies (8028890)
Rolf B. Edvardsen (6913946)
Tomasz Furmanek (283506)
Harald Sveier (8218770)
Herve Migaud (308426)
Jon Vidar Helvik (8028887)
author_facet Mariann Eilertsen (11502317)
David W. P. Dolan (14247792)
Charlotte M. Bolton (11780345)
Rita Karlsen (13025421)
Wayne I. L. Davies (8028890)
Rolf B. Edvardsen (6913946)
Tomasz Furmanek (283506)
Harald Sveier (8218770)
Herve Migaud (308426)
Jon Vidar Helvik (8028887)
author_sort Mariann Eilertsen (11502317)
title Number of differentially expressed genes (DEGs) by DESeq2.
title_short Number of differentially expressed genes (DEGs) by DESeq2.
title_full Number of differentially expressed genes (DEGs) by DESeq2.
title_fullStr Number of differentially expressed genes (DEGs) by DESeq2.
title_full_unstemmed Number of differentially expressed genes (DEGs) by DESeq2.
title_sort number of differentially expressed genes (degs) by deseq2.
publishDate 2022
url https://doi.org/10.1371/journal.pgen.1010529.s013
genre Atlantic salmon
Salmo salar
genre_facet Atlantic salmon
Salmo salar
op_relation https://figshare.com/articles/dataset/Number_of_differentially_expressed_genes_DEGs_by_DESeq2_/21711963
doi:10.1371/journal.pgen.1010529.s013
op_rights CC BY 4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1371/journal.pgen.1010529.s013
_version_ 1766362807384670208