The full component of nonvisual opsin genes found in the genome of Atlantic salmon.

The LOC-ID, Ensembl GeneID, chromosome location, strand and Ss4R duplication pair are included. Note that tmtopsin3a1 is not annotated and opn9 is incorrectly annotated in the Ensembl database. These genes are identified by LOC-ID. (XLSX)

Bibliographic Details
Main Authors: Mariann Eilertsen (11502317), David W. P. Dolan (14247792), Charlotte M. Bolton (11780345), Rita Karlsen (13025421), Wayne I. L. Davies (8028890), Rolf B. Edvardsen (6913946), Tomasz Furmanek (283506), Harald Sveier (8218770), Herve Migaud (308426), Jon Vidar Helvik (8028887)
Format: Dataset
Language:unknown
Published: 2022
Subjects:
Online Access:https://doi.org/10.1371/journal.pgen.1010529.s009
id ftunivfreestate:oai:figshare.com:article/21711948
record_format openpolar
spelling ftunivfreestate:oai:figshare.com:article/21711948 2023-05-15T15:30:48+02:00 The full component of nonvisual opsin genes found in the genome of Atlantic salmon. Mariann Eilertsen (11502317) David W. P. Dolan (14247792) Charlotte M. Bolton (11780345) Rita Karlsen (13025421) Wayne I. L. Davies (8028890) Rolf B. Edvardsen (6913946) Tomasz Furmanek (283506) Harald Sveier (8218770) Herve Migaud (308426) Jon Vidar Helvik (8028887) 2022-12-12T18:22:53Z https://doi.org/10.1371/journal.pgen.1010529.s009 unknown https://figshare.com/articles/dataset/The_full_component_of_nonvisual_opsin_genes_found_in_the_genome_of_Atlantic_salmon_/21711948 doi:10.1371/journal.pgen.1010529.s009 CC BY 4.0 CC-BY Microbiology Cell Biology Genetics Molecular Biology Neuroscience Physiology Ecology Developmental Biology Inorganic Chemistry Mental Health Environmental Sciences not elsewhere classified Biological Sciences not elsewhere classified salmo salar </ atlantic salmon (< complex photoreceptive system photoperiod </ p div >< p early developmental stages two clock genes several clock genes differing light conditions developing teleost prior circadian profile showed different light conditions constant white light constant conditions circadian profile clock genes white light light conditions constant light significantly different results showed present prior photoreceptive capacity developmental series expressed early early development light environment light condition green light many genes genes related genes associated transcriptomic response transcriptome profile study implies significantly cycling seasonal changes poorly differentiated Dataset 2022 ftunivfreestate https://doi.org/10.1371/journal.pgen.1010529.s009 2022-12-16T00:33:53Z The LOC-ID, Ensembl GeneID, chromosome location, strand and Ss4R duplication pair are included. Note that tmtopsin3a1 is not annotated and opn9 is incorrectly annotated in the Ensembl database. These genes are identified by LOC-ID. (XLSX) Dataset Atlantic salmon Salmo salar KovsieScholar Repository (University of the Free State - UFS UV)
institution Open Polar
collection KovsieScholar Repository (University of the Free State - UFS UV)
op_collection_id ftunivfreestate
language unknown
topic Microbiology
Cell Biology
Genetics
Molecular Biology
Neuroscience
Physiology
Ecology
Developmental Biology
Inorganic Chemistry
Mental Health
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
salmo salar </
atlantic salmon (<
complex photoreceptive system
photoperiod </ p
div >< p
early developmental stages
two clock genes
several clock genes
differing light conditions
developing teleost prior
circadian profile showed
different light conditions
constant white light
constant conditions
circadian profile
clock genes
white light
light conditions
constant light
significantly different
results showed
present prior
photoreceptive capacity
developmental series
expressed early
early development
light environment
light condition
green light
many genes
genes related
genes associated
transcriptomic response
transcriptome profile
study implies
significantly cycling
seasonal changes
poorly differentiated
spellingShingle Microbiology
Cell Biology
Genetics
Molecular Biology
Neuroscience
Physiology
Ecology
Developmental Biology
Inorganic Chemistry
Mental Health
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
salmo salar </
atlantic salmon (<
complex photoreceptive system
photoperiod </ p
div >< p
early developmental stages
two clock genes
several clock genes
differing light conditions
developing teleost prior
circadian profile showed
different light conditions
constant white light
constant conditions
circadian profile
clock genes
white light
light conditions
constant light
significantly different
results showed
present prior
photoreceptive capacity
developmental series
expressed early
early development
light environment
light condition
green light
many genes
genes related
genes associated
transcriptomic response
transcriptome profile
study implies
significantly cycling
seasonal changes
poorly differentiated
Mariann Eilertsen (11502317)
David W. P. Dolan (14247792)
Charlotte M. Bolton (11780345)
Rita Karlsen (13025421)
Wayne I. L. Davies (8028890)
Rolf B. Edvardsen (6913946)
Tomasz Furmanek (283506)
Harald Sveier (8218770)
Herve Migaud (308426)
Jon Vidar Helvik (8028887)
The full component of nonvisual opsin genes found in the genome of Atlantic salmon.
topic_facet Microbiology
Cell Biology
Genetics
Molecular Biology
Neuroscience
Physiology
Ecology
Developmental Biology
Inorganic Chemistry
Mental Health
Environmental Sciences not elsewhere classified
Biological Sciences not elsewhere classified
salmo salar </
atlantic salmon (<
complex photoreceptive system
photoperiod </ p
div >< p
early developmental stages
two clock genes
several clock genes
differing light conditions
developing teleost prior
circadian profile showed
different light conditions
constant white light
constant conditions
circadian profile
clock genes
white light
light conditions
constant light
significantly different
results showed
present prior
photoreceptive capacity
developmental series
expressed early
early development
light environment
light condition
green light
many genes
genes related
genes associated
transcriptomic response
transcriptome profile
study implies
significantly cycling
seasonal changes
poorly differentiated
description The LOC-ID, Ensembl GeneID, chromosome location, strand and Ss4R duplication pair are included. Note that tmtopsin3a1 is not annotated and opn9 is incorrectly annotated in the Ensembl database. These genes are identified by LOC-ID. (XLSX)
format Dataset
author Mariann Eilertsen (11502317)
David W. P. Dolan (14247792)
Charlotte M. Bolton (11780345)
Rita Karlsen (13025421)
Wayne I. L. Davies (8028890)
Rolf B. Edvardsen (6913946)
Tomasz Furmanek (283506)
Harald Sveier (8218770)
Herve Migaud (308426)
Jon Vidar Helvik (8028887)
author_facet Mariann Eilertsen (11502317)
David W. P. Dolan (14247792)
Charlotte M. Bolton (11780345)
Rita Karlsen (13025421)
Wayne I. L. Davies (8028890)
Rolf B. Edvardsen (6913946)
Tomasz Furmanek (283506)
Harald Sveier (8218770)
Herve Migaud (308426)
Jon Vidar Helvik (8028887)
author_sort Mariann Eilertsen (11502317)
title The full component of nonvisual opsin genes found in the genome of Atlantic salmon.
title_short The full component of nonvisual opsin genes found in the genome of Atlantic salmon.
title_full The full component of nonvisual opsin genes found in the genome of Atlantic salmon.
title_fullStr The full component of nonvisual opsin genes found in the genome of Atlantic salmon.
title_full_unstemmed The full component of nonvisual opsin genes found in the genome of Atlantic salmon.
title_sort full component of nonvisual opsin genes found in the genome of atlantic salmon.
publishDate 2022
url https://doi.org/10.1371/journal.pgen.1010529.s009
genre Atlantic salmon
Salmo salar
genre_facet Atlantic salmon
Salmo salar
op_relation https://figshare.com/articles/dataset/The_full_component_of_nonvisual_opsin_genes_found_in_the_genome_of_Atlantic_salmon_/21711948
doi:10.1371/journal.pgen.1010529.s009
op_rights CC BY 4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.1371/journal.pgen.1010529.s009
_version_ 1766361269306130432