Whole genome population structure of North Atlantic kelp confirms high-latitude glacial refugia

Presented here are files related the genome assembly of the kelp Alaria esculenta using long and short read data, and population genomic analysis of North Atlantic populations. The specific files are: Alaria esculenta draft genome: alaria_v3.fasta: Final assembly contigs alaria_v3.gff3: Final assemb...

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Bibliographic Details
Main Author: Trevor Bringloe (8064299)
Format: Dataset
Language:unknown
Published: 2022
Subjects:
Genomics
Kelp
Whole Genome Sequencing
BlobTools
VCF
SNPs
Population genomics
North Atlantic
Online Access:https://doi.org/10.6084/m9.figshare.16712797.v2
id ftunivfreestate:oai:figshare.com:article/16712797
record_format openpolar
spelling ftunivfreestate:oai:figshare.com:article/16712797 2023-05-15T17:28:19+02:00 Whole genome population structure of North Atlantic kelp confirms high-latitude glacial refugia Trevor Bringloe (8064299) 2022-09-21T17:18:22Z https://doi.org/10.6084/m9.figshare.16712797.v2 unknown https://figshare.com/articles/dataset/GENOME_SCALE_POPULATION_STRUCTURE_OF_HIGH_LATITUDE_KELP_REVEALS_MULTIPLE_GLACIAL_REFUGIAL_ORIGINS_ANCIENT_MIXING_AND_POTENTIAL_SELECTIVE_SWEEPS/16712797 doi:10.6084/m9.figshare.16712797.v2 CC BY 4.0 CC-BY Genomics Kelp Whole Genome Sequencing BlobTools VCF SNPs Population genomics Dataset 2022 ftunivfreestate https://doi.org/10.6084/m9.figshare.16712797.v2 2023-01-06T00:26:57Z Presented here are files related the genome assembly of the kelp Alaria esculenta using long and short read data, and population genomic analysis of North Atlantic populations. The specific files are: Alaria esculenta draft genome: alaria_v3.fasta: Final assembly contigs alaria_v3.gff3: Final assembly annotations Population genomic analyses: A_esculenta_coverage_exon-gene_annotations_30vi22.xlsx: presents exon coverage values for each population. Note, coverage is standardized within each sample for expected coverage of single copy orthologues; 0=missing, 1=expected coverage, >1=greater coverage relative to single copy orthologues (where 2=2x, 3=3x, ect). Dataset North Atlantic KovsieScholar Repository (University of the Free State - UFS UV)
institution Open Polar
collection KovsieScholar Repository (University of the Free State - UFS UV)
op_collection_id ftunivfreestate
language unknown
topic Genomics
Kelp
Whole Genome Sequencing
BlobTools
VCF
SNPs
Population genomics
spellingShingle Genomics
Kelp
Whole Genome Sequencing
BlobTools
VCF
SNPs
Population genomics
Trevor Bringloe (8064299)
Whole genome population structure of North Atlantic kelp confirms high-latitude glacial refugia
topic_facet Genomics
Kelp
Whole Genome Sequencing
BlobTools
VCF
SNPs
Population genomics
description Presented here are files related the genome assembly of the kelp Alaria esculenta using long and short read data, and population genomic analysis of North Atlantic populations. The specific files are: Alaria esculenta draft genome: alaria_v3.fasta: Final assembly contigs alaria_v3.gff3: Final assembly annotations Population genomic analyses: A_esculenta_coverage_exon-gene_annotations_30vi22.xlsx: presents exon coverage values for each population. Note, coverage is standardized within each sample for expected coverage of single copy orthologues; 0=missing, 1=expected coverage, >1=greater coverage relative to single copy orthologues (where 2=2x, 3=3x, ect).
format Dataset
author Trevor Bringloe (8064299)
author_facet Trevor Bringloe (8064299)
author_sort Trevor Bringloe (8064299)
title Whole genome population structure of North Atlantic kelp confirms high-latitude glacial refugia
title_short Whole genome population structure of North Atlantic kelp confirms high-latitude glacial refugia
title_full Whole genome population structure of North Atlantic kelp confirms high-latitude glacial refugia
title_fullStr Whole genome population structure of North Atlantic kelp confirms high-latitude glacial refugia
title_full_unstemmed Whole genome population structure of North Atlantic kelp confirms high-latitude glacial refugia
title_sort whole genome population structure of north atlantic kelp confirms high-latitude glacial refugia
publishDate 2022
url https://doi.org/10.6084/m9.figshare.16712797.v2
genre North Atlantic
genre_facet North Atlantic
op_relation https://figshare.com/articles/dataset/GENOME_SCALE_POPULATION_STRUCTURE_OF_HIGH_LATITUDE_KELP_REVEALS_MULTIPLE_GLACIAL_REFUGIAL_ORIGINS_ANCIENT_MIXING_AND_POTENTIAL_SELECTIVE_SWEEPS/16712797
doi:10.6084/m9.figshare.16712797.v2
op_rights CC BY 4.0
op_rightsnorm CC-BY
op_doi https://doi.org/10.6084/m9.figshare.16712797.v2
_version_ 1766120926014865408

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