Significance testing testate amoeba water table reconstructions

This is the author accepted manuscript. The final version is available from the publisher via the DOI in this record. Transfer functions are valuable tools in palaeoecology, but their output may not always be meaningful. A recently-developed statistical test ('randomTF') offers the potenti...

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Published in:Quaternary Science Reviews
Main Authors: Payne, RJ, Babeshko, KV, van Bellen, S, Blackford, JJ, Booth, RK, Charman, DJ, Ellershaw, MR, Gilbert, D, Hughes, PDM, Jassey, VEJ, Lamentowicz, Ł, Lamentowicz, M, Malysheva, EA, Mauquoy, D, Mazei, Y, Mitchell, EAD, Swindles, GT, Tsyganov, AN, Turner, TE, Telford, RJ
Format: Article in Journal/Newspaper
Language:English
Published: Elsevier 2016
Subjects:
Online Access:http://hdl.handle.net/10871/22185
https://doi.org/10.1016/j.quascirev.2016.01.030
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author Payne, RJ
Babeshko, KV
van Bellen, S
Blackford, JJ
Booth, RK
Charman, DJ
Ellershaw, MR
Gilbert, D
Hughes, PDM
Jassey, VEJ
Lamentowicz, Ł
Lamentowicz, M
Malysheva, EA
Mauquoy, D
Mazei, Y
Mitchell, EAD
Swindles, GT
Tsyganov, AN
Turner, TE
Telford, RJ
author_facet Payne, RJ
Babeshko, KV
van Bellen, S
Blackford, JJ
Booth, RK
Charman, DJ
Ellershaw, MR
Gilbert, D
Hughes, PDM
Jassey, VEJ
Lamentowicz, Ł
Lamentowicz, M
Malysheva, EA
Mauquoy, D
Mazei, Y
Mitchell, EAD
Swindles, GT
Tsyganov, AN
Turner, TE
Telford, RJ
author_sort Payne, RJ
collection University of Exeter: Open Research Exeter (ORE)
container_start_page 131
container_title Quaternary Science Reviews
container_volume 138
description This is the author accepted manuscript. The final version is available from the publisher via the DOI in this record. Transfer functions are valuable tools in palaeoecology, but their output may not always be meaningful. A recently-developed statistical test ('randomTF') offers the potential to distinguish among reconstructions which are more likely to be useful, and those less so. We applied this test to a large number of reconstructions of peatland water table depth based on testate amoebae. Contrary to our expectations, a substantial majority (25 of 30) of these reconstructions gave non-significant results (P > 0.05). The underlying reasons for this outcome are unclear. We found no significant correlation between randomTF P-value and transfer function performance, the properties of the training set and reconstruction, or measures of transfer function fit. These results give cause for concern but we believe it would be extremely premature to discount the results of non-significant reconstructions. We stress the need for more critical assessment of transfer function output, replication of results and ecologically-informed interpretation of palaeoecological data. Elements of this project were supported by various funding agencies including: grant PSPB-013/2010 through the Swiss Contribution to the enlarged EU; project 017008 through EU FP6 (Millenium); grant 14-14-00891 from the Russian Scientific Fund; grant IE150173 from the Royal Society; NERC doctoral training grant NE/G52398X/1; NERC research grants NE/I022809/1, NE/I022981/1, NE/I022833/1 and NE/I023104/1; a DEL-NI doctoral training grant and the Worldwide Universities Network (project: Arctic Environments, Vulnerabilities and Opportunities). RJP is supported by the Leverhulme Trust through project RPG-2015-162.
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spelling ftunivexeter:oai:ore.exeter.ac.uk:10871/22185 2025-04-06T14:46:25+00:00 Significance testing testate amoeba water table reconstructions Payne, RJ Babeshko, KV van Bellen, S Blackford, JJ Booth, RK Charman, DJ Ellershaw, MR Gilbert, D Hughes, PDM Jassey, VEJ Lamentowicz, Ł Lamentowicz, M Malysheva, EA Mauquoy, D Mazei, Y Mitchell, EAD Swindles, GT Tsyganov, AN Turner, TE Telford, RJ 2016 http://hdl.handle.net/10871/22185 https://doi.org/10.1016/j.quascirev.2016.01.030 en eng Elsevier doi:10.1016/j.quascirev.2016.01.030 http://hdl.handle.net/10871/22185 Quaternary Science Reviews 2017-02-15 Publisher Policy Testate amoeba Protist Palaeoecology Palaeohydrology Transfer function RandomTF Article 2016 ftunivexeter https://doi.org/10.1016/j.quascirev.2016.01.030 2025-03-11T01:39:58Z This is the author accepted manuscript. The final version is available from the publisher via the DOI in this record. Transfer functions are valuable tools in palaeoecology, but their output may not always be meaningful. A recently-developed statistical test ('randomTF') offers the potential to distinguish among reconstructions which are more likely to be useful, and those less so. We applied this test to a large number of reconstructions of peatland water table depth based on testate amoebae. Contrary to our expectations, a substantial majority (25 of 30) of these reconstructions gave non-significant results (P > 0.05). The underlying reasons for this outcome are unclear. We found no significant correlation between randomTF P-value and transfer function performance, the properties of the training set and reconstruction, or measures of transfer function fit. These results give cause for concern but we believe it would be extremely premature to discount the results of non-significant reconstructions. We stress the need for more critical assessment of transfer function output, replication of results and ecologically-informed interpretation of palaeoecological data. Elements of this project were supported by various funding agencies including: grant PSPB-013/2010 through the Swiss Contribution to the enlarged EU; project 017008 through EU FP6 (Millenium); grant 14-14-00891 from the Russian Scientific Fund; grant IE150173 from the Royal Society; NERC doctoral training grant NE/G52398X/1; NERC research grants NE/I022809/1, NE/I022981/1, NE/I022833/1 and NE/I023104/1; a DEL-NI doctoral training grant and the Worldwide Universities Network (project: Arctic Environments, Vulnerabilities and Opportunities). RJP is supported by the Leverhulme Trust through project RPG-2015-162. Article in Journal/Newspaper Arctic University of Exeter: Open Research Exeter (ORE) Arctic Quaternary Science Reviews 138 131 135
spellingShingle Testate amoeba
Protist
Palaeoecology
Palaeohydrology
Transfer function
RandomTF
Payne, RJ
Babeshko, KV
van Bellen, S
Blackford, JJ
Booth, RK
Charman, DJ
Ellershaw, MR
Gilbert, D
Hughes, PDM
Jassey, VEJ
Lamentowicz, Ł
Lamentowicz, M
Malysheva, EA
Mauquoy, D
Mazei, Y
Mitchell, EAD
Swindles, GT
Tsyganov, AN
Turner, TE
Telford, RJ
Significance testing testate amoeba water table reconstructions
title Significance testing testate amoeba water table reconstructions
title_full Significance testing testate amoeba water table reconstructions
title_fullStr Significance testing testate amoeba water table reconstructions
title_full_unstemmed Significance testing testate amoeba water table reconstructions
title_short Significance testing testate amoeba water table reconstructions
title_sort significance testing testate amoeba water table reconstructions
topic Testate amoeba
Protist
Palaeoecology
Palaeohydrology
Transfer function
RandomTF
topic_facet Testate amoeba
Protist
Palaeoecology
Palaeohydrology
Transfer function
RandomTF
url http://hdl.handle.net/10871/22185
https://doi.org/10.1016/j.quascirev.2016.01.030