The oyster genome reveals stress adaptation and complexity of shell formation
The Pacific oyster Crassostrea gigas belongs to one of the most species-rich but genomically poorly explored phyla, the Mollusca. Here we report the sequencing and assembly of the oyster genome using short reads and a fosmid-pooling strategy, along with transcriptomes of development and stress respo...
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2012
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ftunivessex:oai:repository.essex.ac.uk:15271 2023-05-15T15:58:35+02:00 The oyster genome reveals stress adaptation and complexity of shell formation Zhang, Guofan Fang, Xiaodong Guo, Ximing Li, Li Luo, Ruibang Xu, Fei Yang, Pengcheng Zhang, Linlin Wang, Xiaotong Qi, Haigang Xiong, Zhiqiang Que, Huayong Xie, Yinlong Holland, Peter WH Paps, Jordi Zhu, Yabing Wu, Fucun Chen, Yuanxin Wang, Jiafeng Peng, Chunfang Meng, Jie Yang, Lan Liu, Jun Wen, Bo Zhang, Na Huang, Zhiyong Zhu, Qihui Feng, Yue Mount, Andrew Hedgecock, Dennis Xu, Zhe Liu, Yunjie Domazet-Lošo, Tomislav Du, Yishuai Sun, Xiaoqing Zhang, Shoudu Liu, Binghang Cheng, Peizhou Jiang, Xuanting Li, Juan Fan, Dingding Wang, Wei Fu, Wenjing Wang, Tong Wang, Bo Zhang, Jibiao Peng, Zhiyu Li, Yingxiang Li, Na Wang, Jinpeng 2012-10 text http://repository.essex.ac.uk/15271/ http://repository.essex.ac.uk/15271/1/2012%20Zhang---Paps%20Oyster%20genome%20Nature.pdf en eng Springer Science and Business Media LLC http://repository.essex.ac.uk/15271/1/2012%20Zhang---Paps%20Oyster%20genome%20Nature.pdf Zhang, Guofan and Fang, Xiaodong and Guo, Ximing and Li, Li and Luo, Ruibang and Xu, Fei and Yang, Pengcheng and Zhang, Linlin and Wang, Xiaotong and Qi, Haigang and Xiong, Zhiqiang and Que, Huayong and Xie, Yinlong and Holland, Peter WH and Paps, Jordi and Zhu, Yabing and Wu, Fucun and Chen, Yuanxin and Wang, Jiafeng and Peng, Chunfang and Meng, Jie and Yang, Lan and Liu, Jun and Wen, Bo and Zhang, Na and Huang, Zhiyong and Zhu, Qihui and Feng, Yue and Mount, Andrew and Hedgecock, Dennis and Xu, Zhe and Liu, Yunjie and Domazet-Lošo, Tomislav and Du, Yishuai and Sun, Xiaoqing and Zhang, Shoudu and Liu, Binghang and Cheng, Peizhou and Jiang, Xuanting and Li, Juan and Fan, Dingding and Wang, Wei and Fu, Wenjing and Wang, Tong and Wang, Bo and Zhang, Jibiao and Peng, Zhiyu and Li, Yingxiang and Li, Na and Wang, Jinpeng and Chen, Maoshan and He, Yan and Tan, Fengji and Song, Xiaorui and Zheng, Qiumei and Huang, Ronglian and Yang, Hailong and Du, Xuedi and Chen, Li and Yang, Mei and Gaffney, Patrick M and Wang, Shan and Luo, Longhai and She, Zhicai and Ming, Yao and Huang, Wen and Zhang, Shu and Huang, Baoyu and Zhang, Yong and Qu, Tao and Ni, Peixiang and Miao, Guoying and Wang, Junyi and Wang, Qiang and Steinberg, Christian EW and Wang, Haiyan and Li, Ning and Qian, Lumin and Zhang, Guojie and Li, Yingrui and Yang, Huanming and Liu, Xiao and Wang, Jian and Yin, Ye and Wang, Jun (2012) 'The oyster genome reveals stress adaptation and complexity of shell formation.' Nature, 490 (7418). pp. 49-54. ISSN 0028-0836 cc_by_nc_sa CC-BY-NC-SA QH301 Biology QH426 Genetics QL Zoology Article PeerReviewed 2012 ftunivessex 2022-08-18T22:40:01Z The Pacific oyster Crassostrea gigas belongs to one of the most species-rich but genomically poorly explored phyla, the Mollusca. Here we report the sequencing and assembly of the oyster genome using short reads and a fosmid-pooling strategy, along with transcriptomes of development and stress response and the proteome of the shell. The oyster genome is highly polymorphic and rich in repetitive sequences, with some transposable elements still actively shaping variation. Transcriptome studies reveal an extensive set of genes responding to environmental stress. The expansion of genes coding for heat shock protein 70 and inhibitors of apoptosis is probably central to the oyster's adaptation to sessile life in the highly stressful intertidal zone. Our analyses also show that shell formation in molluscs is more complex than currently understood and involves extensive participation of cells and their exosomes. The oyster genome sequence fills a void in our understanding of the Lophotrochozoa. © 2012 Macmillan Publishers Limited. All rights reserved. Article in Journal/Newspaper Crassostrea gigas Pacific oyster University of Essex Research Repository Pacific |
institution |
Open Polar |
collection |
University of Essex Research Repository |
op_collection_id |
ftunivessex |
language |
English |
topic |
QH301 Biology QH426 Genetics QL Zoology |
spellingShingle |
QH301 Biology QH426 Genetics QL Zoology Zhang, Guofan Fang, Xiaodong Guo, Ximing Li, Li Luo, Ruibang Xu, Fei Yang, Pengcheng Zhang, Linlin Wang, Xiaotong Qi, Haigang Xiong, Zhiqiang Que, Huayong Xie, Yinlong Holland, Peter WH Paps, Jordi Zhu, Yabing Wu, Fucun Chen, Yuanxin Wang, Jiafeng Peng, Chunfang Meng, Jie Yang, Lan Liu, Jun Wen, Bo Zhang, Na Huang, Zhiyong Zhu, Qihui Feng, Yue Mount, Andrew Hedgecock, Dennis Xu, Zhe Liu, Yunjie Domazet-Lošo, Tomislav Du, Yishuai Sun, Xiaoqing Zhang, Shoudu Liu, Binghang Cheng, Peizhou Jiang, Xuanting Li, Juan Fan, Dingding Wang, Wei Fu, Wenjing Wang, Tong Wang, Bo Zhang, Jibiao Peng, Zhiyu Li, Yingxiang Li, Na Wang, Jinpeng The oyster genome reveals stress adaptation and complexity of shell formation |
topic_facet |
QH301 Biology QH426 Genetics QL Zoology |
description |
The Pacific oyster Crassostrea gigas belongs to one of the most species-rich but genomically poorly explored phyla, the Mollusca. Here we report the sequencing and assembly of the oyster genome using short reads and a fosmid-pooling strategy, along with transcriptomes of development and stress response and the proteome of the shell. The oyster genome is highly polymorphic and rich in repetitive sequences, with some transposable elements still actively shaping variation. Transcriptome studies reveal an extensive set of genes responding to environmental stress. The expansion of genes coding for heat shock protein 70 and inhibitors of apoptosis is probably central to the oyster's adaptation to sessile life in the highly stressful intertidal zone. Our analyses also show that shell formation in molluscs is more complex than currently understood and involves extensive participation of cells and their exosomes. The oyster genome sequence fills a void in our understanding of the Lophotrochozoa. © 2012 Macmillan Publishers Limited. All rights reserved. |
format |
Article in Journal/Newspaper |
author |
Zhang, Guofan Fang, Xiaodong Guo, Ximing Li, Li Luo, Ruibang Xu, Fei Yang, Pengcheng Zhang, Linlin Wang, Xiaotong Qi, Haigang Xiong, Zhiqiang Que, Huayong Xie, Yinlong Holland, Peter WH Paps, Jordi Zhu, Yabing Wu, Fucun Chen, Yuanxin Wang, Jiafeng Peng, Chunfang Meng, Jie Yang, Lan Liu, Jun Wen, Bo Zhang, Na Huang, Zhiyong Zhu, Qihui Feng, Yue Mount, Andrew Hedgecock, Dennis Xu, Zhe Liu, Yunjie Domazet-Lošo, Tomislav Du, Yishuai Sun, Xiaoqing Zhang, Shoudu Liu, Binghang Cheng, Peizhou Jiang, Xuanting Li, Juan Fan, Dingding Wang, Wei Fu, Wenjing Wang, Tong Wang, Bo Zhang, Jibiao Peng, Zhiyu Li, Yingxiang Li, Na Wang, Jinpeng |
author_facet |
Zhang, Guofan Fang, Xiaodong Guo, Ximing Li, Li Luo, Ruibang Xu, Fei Yang, Pengcheng Zhang, Linlin Wang, Xiaotong Qi, Haigang Xiong, Zhiqiang Que, Huayong Xie, Yinlong Holland, Peter WH Paps, Jordi Zhu, Yabing Wu, Fucun Chen, Yuanxin Wang, Jiafeng Peng, Chunfang Meng, Jie Yang, Lan Liu, Jun Wen, Bo Zhang, Na Huang, Zhiyong Zhu, Qihui Feng, Yue Mount, Andrew Hedgecock, Dennis Xu, Zhe Liu, Yunjie Domazet-Lošo, Tomislav Du, Yishuai Sun, Xiaoqing Zhang, Shoudu Liu, Binghang Cheng, Peizhou Jiang, Xuanting Li, Juan Fan, Dingding Wang, Wei Fu, Wenjing Wang, Tong Wang, Bo Zhang, Jibiao Peng, Zhiyu Li, Yingxiang Li, Na Wang, Jinpeng |
author_sort |
Zhang, Guofan |
title |
The oyster genome reveals stress adaptation and complexity of shell formation |
title_short |
The oyster genome reveals stress adaptation and complexity of shell formation |
title_full |
The oyster genome reveals stress adaptation and complexity of shell formation |
title_fullStr |
The oyster genome reveals stress adaptation and complexity of shell formation |
title_full_unstemmed |
The oyster genome reveals stress adaptation and complexity of shell formation |
title_sort |
oyster genome reveals stress adaptation and complexity of shell formation |
publisher |
Springer Science and Business Media LLC |
publishDate |
2012 |
url |
http://repository.essex.ac.uk/15271/ http://repository.essex.ac.uk/15271/1/2012%20Zhang---Paps%20Oyster%20genome%20Nature.pdf |
geographic |
Pacific |
geographic_facet |
Pacific |
genre |
Crassostrea gigas Pacific oyster |
genre_facet |
Crassostrea gigas Pacific oyster |
op_relation |
http://repository.essex.ac.uk/15271/1/2012%20Zhang---Paps%20Oyster%20genome%20Nature.pdf Zhang, Guofan and Fang, Xiaodong and Guo, Ximing and Li, Li and Luo, Ruibang and Xu, Fei and Yang, Pengcheng and Zhang, Linlin and Wang, Xiaotong and Qi, Haigang and Xiong, Zhiqiang and Que, Huayong and Xie, Yinlong and Holland, Peter WH and Paps, Jordi and Zhu, Yabing and Wu, Fucun and Chen, Yuanxin and Wang, Jiafeng and Peng, Chunfang and Meng, Jie and Yang, Lan and Liu, Jun and Wen, Bo and Zhang, Na and Huang, Zhiyong and Zhu, Qihui and Feng, Yue and Mount, Andrew and Hedgecock, Dennis and Xu, Zhe and Liu, Yunjie and Domazet-Lošo, Tomislav and Du, Yishuai and Sun, Xiaoqing and Zhang, Shoudu and Liu, Binghang and Cheng, Peizhou and Jiang, Xuanting and Li, Juan and Fan, Dingding and Wang, Wei and Fu, Wenjing and Wang, Tong and Wang, Bo and Zhang, Jibiao and Peng, Zhiyu and Li, Yingxiang and Li, Na and Wang, Jinpeng and Chen, Maoshan and He, Yan and Tan, Fengji and Song, Xiaorui and Zheng, Qiumei and Huang, Ronglian and Yang, Hailong and Du, Xuedi and Chen, Li and Yang, Mei and Gaffney, Patrick M and Wang, Shan and Luo, Longhai and She, Zhicai and Ming, Yao and Huang, Wen and Zhang, Shu and Huang, Baoyu and Zhang, Yong and Qu, Tao and Ni, Peixiang and Miao, Guoying and Wang, Junyi and Wang, Qiang and Steinberg, Christian EW and Wang, Haiyan and Li, Ning and Qian, Lumin and Zhang, Guojie and Li, Yingrui and Yang, Huanming and Liu, Xiao and Wang, Jian and Yin, Ye and Wang, Jun (2012) 'The oyster genome reveals stress adaptation and complexity of shell formation.' Nature, 490 (7418). pp. 49-54. ISSN 0028-0836 |
op_rights |
cc_by_nc_sa |
op_rightsnorm |
CC-BY-NC-SA |
_version_ |
1766394341027217408 |