Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research

DNA sequences offer powerful tools for describing the members and interactions of natural communities. In this study, we establish the to-date most comprehensive library of DNA barcodes for a terrestrial site, including all known macroscopic animals and vascular plants of an intensively studied area...

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Main Authors: Wirta, H.,University of Helsinki, Várkonyi, G.,Finnish Environment Institute, Rasmussen, C.,Aarhus University, Kaartinen, R.,Swedish University of Agricultural Sciences, Schmidt, N. M.,Aarhus University, Hebert, P. D. N.,University of Guelph, Barták, M.,Czech University of Life Sciences Prague, Blagoev, G.,University of Guelph, Disney, H.,University of Cambridge, Ertl, S.,University of Vienna, Gjelstrup, P.,Aarhus University, Gwiazdowicz, D. J.,University of Life Sciences, Huldén, L.,University of Helsinki, Ilmonen, J.,University of Vienna, Jakovlev, J.,Finnish Environment Institute, Jaschhof, M.,Station Linné; Ölands Skogsby 161 38693 Färjestaden Sweden*, Kahanpää, J.,University of Helsinki, Kankaanpää, T.,University of Helsinki, Krogh, P. H.,Aarhus University, Labbee, R.,University of Guelph, Lettner, C.,University of Vienna, Michelsen, V.,University of Copenhagen, Nielsen, S. A.,Roskilde University, Nielsen, T. R.,University of Helsinki, Paasivirta, L.,University of Helsinki, Pedersen, S.,University of Guelph, Pohjoismäki, J.,University of Eastern Finland, Salmela, J.,Metsähallitus (Finland), Vilkamaa, P.,University of Helsinki, Väre, H.,University of Helsinki, von Tschirnhaus, M.,Bielefeld University, Roslin, T.,University of Helsinki
Language:unknown
Published: 2021
Subjects:
Online Access:https://doi.org/10.5061/dryad.sg5s0
https://erepo.uef.fi/handle/123456789/25648
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record_format openpolar
spelling ftuniveasternfin:oai:erepo.uef.fi:123456789/25648 2023-05-15T14:51:11+02:00 Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research Wirta, H.,University of Helsinki Várkonyi, G.,Finnish Environment Institute Rasmussen, C.,Aarhus University Kaartinen, R.,Swedish University of Agricultural Sciences Schmidt, N. M.,Aarhus University Hebert, P. D. N.,University of Guelph Barták, M.,Czech University of Life Sciences Prague Blagoev, G.,University of Guelph Disney, H.,University of Cambridge Ertl, S.,University of Vienna Gjelstrup, P.,Aarhus University Gwiazdowicz, D. J.,University of Life Sciences Huldén, L.,University of Helsinki Ilmonen, J.,University of Vienna Jakovlev, J.,Finnish Environment Institute Jaschhof, M.,Station Linné; Ölands Skogsby 161 38693 Färjestaden Sweden* Kahanpää, J.,University of Helsinki Kankaanpää, T.,University of Helsinki Krogh, P. H.,Aarhus University Labbee, R.,University of Guelph Lettner, C.,University of Vienna Michelsen, V.,University of Copenhagen Nielsen, S. A.,Roskilde University Nielsen, T. R.,University of Helsinki Paasivirta, L.,University of Helsinki Pedersen, S.,University of Guelph Pohjoismäki, J.,University of Eastern Finland Salmela, J.,Metsähallitus (Finland) Vilkamaa, P.,University of Helsinki Väre, H.,University of Helsinki von Tschirnhaus, M.,Bielefeld University Roslin, T.,University of Helsinki 2021-06-19T02:06:02Z https://doi.org/10.5061/dryad.sg5s0 https://erepo.uef.fi/handle/123456789/25648 unknown https://zenodo.org/record/4989228 10.5061/dryad.sg5s0 doi:10.5061/dryad.sg5s0 https://erepo.uef.fi/handle/123456789/25648 DNA barcode library 2021 ftuniveasternfin https://doi.org/10.5061/dryad.sg5s0 2022-12-11T06:54:55Z DNA sequences offer powerful tools for describing the members and interactions of natural communities. In this study, we establish the to-date most comprehensive library of DNA barcodes for a terrestrial site, including all known macroscopic animals and vascular plants of an intensively studied area of the High Arctic, the Zackenberg Valley in Northeast Greenland. To demonstrate its utility, we apply the library to identify nearly 20 000 arthropod individuals from two Malaise traps, each operated for two summers. Drawing on this material, we estimate the coverage of previous morphology-based species inventories, derive a snapshot of faunal turnover in space and time and describe the abundance and phenology of species in the rapidly changing arctic environment. Overall, 403 terrestrial animal and 160 vascular plant species were recorded by morphology-based techniques. DNA barcodes (CO1) offered high resolution in discriminating among the local animal taxa, with 92% of morphologically distinguishable taxa assigned to unique Barcode Index Numbers (BINs) and 93% to monophyletic clusters. For vascular plants, resolution was lower, with 54% of species forming monophyletic clusters based on barcode regions rbcLa and ITS2. Malaise catches revealed 122 BINs not detected by previous sampling and DNA barcoding. The insect community was dominated by a few highly abundant taxa. Even closely related taxa differed in phenology, emphasizing the need for species-level resolution when describing ongoing shifts in arctic communities and ecosystems. The DNA barcode library now established for Zackenberg offers new scope for such explorations, and for the detailed dissection of interspecific interactions throughout the community. Other/Unknown Material Arctic Greenland Zackenberg UEF eRepository (University of Eastern Finland) Arctic Greenland
institution Open Polar
collection UEF eRepository (University of Eastern Finland)
op_collection_id ftuniveasternfin
language unknown
topic DNA barcode library
spellingShingle DNA barcode library
Wirta, H.,University of Helsinki
Várkonyi, G.,Finnish Environment Institute
Rasmussen, C.,Aarhus University
Kaartinen, R.,Swedish University of Agricultural Sciences
Schmidt, N. M.,Aarhus University
Hebert, P. D. N.,University of Guelph
Barták, M.,Czech University of Life Sciences Prague
Blagoev, G.,University of Guelph
Disney, H.,University of Cambridge
Ertl, S.,University of Vienna
Gjelstrup, P.,Aarhus University
Gwiazdowicz, D. J.,University of Life Sciences
Huldén, L.,University of Helsinki
Ilmonen, J.,University of Vienna
Jakovlev, J.,Finnish Environment Institute
Jaschhof, M.,Station Linné; Ölands Skogsby 161 38693 Färjestaden Sweden*
Kahanpää, J.,University of Helsinki
Kankaanpää, T.,University of Helsinki
Krogh, P. H.,Aarhus University
Labbee, R.,University of Guelph
Lettner, C.,University of Vienna
Michelsen, V.,University of Copenhagen
Nielsen, S. A.,Roskilde University
Nielsen, T. R.,University of Helsinki
Paasivirta, L.,University of Helsinki
Pedersen, S.,University of Guelph
Pohjoismäki, J.,University of Eastern Finland
Salmela, J.,Metsähallitus (Finland)
Vilkamaa, P.,University of Helsinki
Väre, H.,University of Helsinki
von Tschirnhaus, M.,Bielefeld University
Roslin, T.,University of Helsinki
Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research
topic_facet DNA barcode library
description DNA sequences offer powerful tools for describing the members and interactions of natural communities. In this study, we establish the to-date most comprehensive library of DNA barcodes for a terrestrial site, including all known macroscopic animals and vascular plants of an intensively studied area of the High Arctic, the Zackenberg Valley in Northeast Greenland. To demonstrate its utility, we apply the library to identify nearly 20 000 arthropod individuals from two Malaise traps, each operated for two summers. Drawing on this material, we estimate the coverage of previous morphology-based species inventories, derive a snapshot of faunal turnover in space and time and describe the abundance and phenology of species in the rapidly changing arctic environment. Overall, 403 terrestrial animal and 160 vascular plant species were recorded by morphology-based techniques. DNA barcodes (CO1) offered high resolution in discriminating among the local animal taxa, with 92% of morphologically distinguishable taxa assigned to unique Barcode Index Numbers (BINs) and 93% to monophyletic clusters. For vascular plants, resolution was lower, with 54% of species forming monophyletic clusters based on barcode regions rbcLa and ITS2. Malaise catches revealed 122 BINs not detected by previous sampling and DNA barcoding. The insect community was dominated by a few highly abundant taxa. Even closely related taxa differed in phenology, emphasizing the need for species-level resolution when describing ongoing shifts in arctic communities and ecosystems. The DNA barcode library now established for Zackenberg offers new scope for such explorations, and for the detailed dissection of interspecific interactions throughout the community.
author Wirta, H.,University of Helsinki
Várkonyi, G.,Finnish Environment Institute
Rasmussen, C.,Aarhus University
Kaartinen, R.,Swedish University of Agricultural Sciences
Schmidt, N. M.,Aarhus University
Hebert, P. D. N.,University of Guelph
Barták, M.,Czech University of Life Sciences Prague
Blagoev, G.,University of Guelph
Disney, H.,University of Cambridge
Ertl, S.,University of Vienna
Gjelstrup, P.,Aarhus University
Gwiazdowicz, D. J.,University of Life Sciences
Huldén, L.,University of Helsinki
Ilmonen, J.,University of Vienna
Jakovlev, J.,Finnish Environment Institute
Jaschhof, M.,Station Linné; Ölands Skogsby 161 38693 Färjestaden Sweden*
Kahanpää, J.,University of Helsinki
Kankaanpää, T.,University of Helsinki
Krogh, P. H.,Aarhus University
Labbee, R.,University of Guelph
Lettner, C.,University of Vienna
Michelsen, V.,University of Copenhagen
Nielsen, S. A.,Roskilde University
Nielsen, T. R.,University of Helsinki
Paasivirta, L.,University of Helsinki
Pedersen, S.,University of Guelph
Pohjoismäki, J.,University of Eastern Finland
Salmela, J.,Metsähallitus (Finland)
Vilkamaa, P.,University of Helsinki
Väre, H.,University of Helsinki
von Tschirnhaus, M.,Bielefeld University
Roslin, T.,University of Helsinki
author_facet Wirta, H.,University of Helsinki
Várkonyi, G.,Finnish Environment Institute
Rasmussen, C.,Aarhus University
Kaartinen, R.,Swedish University of Agricultural Sciences
Schmidt, N. M.,Aarhus University
Hebert, P. D. N.,University of Guelph
Barták, M.,Czech University of Life Sciences Prague
Blagoev, G.,University of Guelph
Disney, H.,University of Cambridge
Ertl, S.,University of Vienna
Gjelstrup, P.,Aarhus University
Gwiazdowicz, D. J.,University of Life Sciences
Huldén, L.,University of Helsinki
Ilmonen, J.,University of Vienna
Jakovlev, J.,Finnish Environment Institute
Jaschhof, M.,Station Linné; Ölands Skogsby 161 38693 Färjestaden Sweden*
Kahanpää, J.,University of Helsinki
Kankaanpää, T.,University of Helsinki
Krogh, P. H.,Aarhus University
Labbee, R.,University of Guelph
Lettner, C.,University of Vienna
Michelsen, V.,University of Copenhagen
Nielsen, S. A.,Roskilde University
Nielsen, T. R.,University of Helsinki
Paasivirta, L.,University of Helsinki
Pedersen, S.,University of Guelph
Pohjoismäki, J.,University of Eastern Finland
Salmela, J.,Metsähallitus (Finland)
Vilkamaa, P.,University of Helsinki
Väre, H.,University of Helsinki
von Tschirnhaus, M.,Bielefeld University
Roslin, T.,University of Helsinki
author_sort Wirta, H.,University of Helsinki
title Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research
title_short Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research
title_full Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research
title_fullStr Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research
title_full_unstemmed Data from: Establishing a community-wide DNA barcode library as a new tool for arctic research
title_sort data from: establishing a community-wide dna barcode library as a new tool for arctic research
publishDate 2021
url https://doi.org/10.5061/dryad.sg5s0
https://erepo.uef.fi/handle/123456789/25648
geographic Arctic
Greenland
geographic_facet Arctic
Greenland
genre Arctic
Greenland
Zackenberg
genre_facet Arctic
Greenland
Zackenberg
op_relation https://zenodo.org/record/4989228
10.5061/dryad.sg5s0
doi:10.5061/dryad.sg5s0
https://erepo.uef.fi/handle/123456789/25648
op_doi https://doi.org/10.5061/dryad.sg5s0
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