Isolation and characterization of nine polymorphic microsatellite markers for the deep-sea shrimp Nematocarcinus lanceopes (Crustacea: Decapoda: Caridea)
Background: The shrimp Nematocarcinus lanceopes Bate, 1888 is found in the deep sea around Antarctica and sub-Antarctic islands. Previous studies on mitochondrial data and species distribution models provided evidence for a homogenous circum-Antarctic population of N. lanceopes. However, to analyze...
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ftunivbern:oai:boris.unibe.ch:44154 2024-04-28T07:56:09+00:00 Isolation and characterization of nine polymorphic microsatellite markers for the deep-sea shrimp Nematocarcinus lanceopes (Crustacea: Decapoda: Caridea) Dambach, Johannes Raupach, Michael J. Mayer, Christoph Schwarzer, Julia Leese, Florian 2013 application/pdf https://boris.unibe.ch/44154/1/Dambach_etal_BMC.pdf https://boris.unibe.ch/44154/ eng eng Biomed Central https://boris.unibe.ch/44154/ info:eu-repo/semantics/openAccess Dambach, Johannes; Raupach, Michael J.; Mayer, Christoph; Schwarzer, Julia; Leese, Florian (2013). Isolation and characterization of nine polymorphic microsatellite markers for the deep-sea shrimp Nematocarcinus lanceopes (Crustacea: Decapoda: Caridea). BMC research notes, 6(1), p. 75. Biomed Central 10.1186/1756-0500-6-75 <http://dx.doi.org/10.1186/1756-0500-6-75> 570 Life sciences biology 590 Animals (Zoology) info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion PeerReviewed 2013 ftunivbern https://doi.org/10.1186/1756-0500-6-75 2024-04-03T14:10:36Z Background: The shrimp Nematocarcinus lanceopes Bate, 1888 is found in the deep sea around Antarctica and sub-Antarctic islands. Previous studies on mitochondrial data and species distribution models provided evidence for a homogenous circum-Antarctic population of N. lanceopes. However, to analyze the fine-scale population genetic structure and to examine influences of abiotic environmental conditions on population composition and genetic diversity, a set of fast evolving nuclear microsatellite markers is required. Findings: We report the isolation and characterization of nine polymorphic microsatellite markers from the Antarctic deep-sea shrimp species Nematocarcinus lanceopes (Crustacea: Decapoda: Caridea). Microsatellite markers were screened in 55 individuals from different locations around the Antarctic continent. All markers were polymorphic with 9 to 25 alleles per locus. The observed heterozygosity ranged from 0.545 to 0.927 and the expected heterozygosity from 0.549 to 0.934. Conclusions: The reported markers provide a novel tool to study genetic structure and diversity in Nematocarcinus lanceopes populations in the Southern Ocean and monitor effects of ongoing climate change in the region on the populations inhabiting these. Article in Journal/Newspaper Antarc* Antarctic Antarctica Southern Ocean BORIS (Bern Open Repository and Information System, University of Bern) BMC Research Notes 6 1 |
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BORIS (Bern Open Repository and Information System, University of Bern) |
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ftunivbern |
language |
English |
topic |
570 Life sciences biology 590 Animals (Zoology) |
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570 Life sciences biology 590 Animals (Zoology) Dambach, Johannes Raupach, Michael J. Mayer, Christoph Schwarzer, Julia Leese, Florian Isolation and characterization of nine polymorphic microsatellite markers for the deep-sea shrimp Nematocarcinus lanceopes (Crustacea: Decapoda: Caridea) |
topic_facet |
570 Life sciences biology 590 Animals (Zoology) |
description |
Background: The shrimp Nematocarcinus lanceopes Bate, 1888 is found in the deep sea around Antarctica and sub-Antarctic islands. Previous studies on mitochondrial data and species distribution models provided evidence for a homogenous circum-Antarctic population of N. lanceopes. However, to analyze the fine-scale population genetic structure and to examine influences of abiotic environmental conditions on population composition and genetic diversity, a set of fast evolving nuclear microsatellite markers is required. Findings: We report the isolation and characterization of nine polymorphic microsatellite markers from the Antarctic deep-sea shrimp species Nematocarcinus lanceopes (Crustacea: Decapoda: Caridea). Microsatellite markers were screened in 55 individuals from different locations around the Antarctic continent. All markers were polymorphic with 9 to 25 alleles per locus. The observed heterozygosity ranged from 0.545 to 0.927 and the expected heterozygosity from 0.549 to 0.934. Conclusions: The reported markers provide a novel tool to study genetic structure and diversity in Nematocarcinus lanceopes populations in the Southern Ocean and monitor effects of ongoing climate change in the region on the populations inhabiting these. |
format |
Article in Journal/Newspaper |
author |
Dambach, Johannes Raupach, Michael J. Mayer, Christoph Schwarzer, Julia Leese, Florian |
author_facet |
Dambach, Johannes Raupach, Michael J. Mayer, Christoph Schwarzer, Julia Leese, Florian |
author_sort |
Dambach, Johannes |
title |
Isolation and characterization of nine polymorphic microsatellite markers for the deep-sea shrimp Nematocarcinus lanceopes (Crustacea: Decapoda: Caridea) |
title_short |
Isolation and characterization of nine polymorphic microsatellite markers for the deep-sea shrimp Nematocarcinus lanceopes (Crustacea: Decapoda: Caridea) |
title_full |
Isolation and characterization of nine polymorphic microsatellite markers for the deep-sea shrimp Nematocarcinus lanceopes (Crustacea: Decapoda: Caridea) |
title_fullStr |
Isolation and characterization of nine polymorphic microsatellite markers for the deep-sea shrimp Nematocarcinus lanceopes (Crustacea: Decapoda: Caridea) |
title_full_unstemmed |
Isolation and characterization of nine polymorphic microsatellite markers for the deep-sea shrimp Nematocarcinus lanceopes (Crustacea: Decapoda: Caridea) |
title_sort |
isolation and characterization of nine polymorphic microsatellite markers for the deep-sea shrimp nematocarcinus lanceopes (crustacea: decapoda: caridea) |
publisher |
Biomed Central |
publishDate |
2013 |
url |
https://boris.unibe.ch/44154/1/Dambach_etal_BMC.pdf https://boris.unibe.ch/44154/ |
genre |
Antarc* Antarctic Antarctica Southern Ocean |
genre_facet |
Antarc* Antarctic Antarctica Southern Ocean |
op_source |
Dambach, Johannes; Raupach, Michael J.; Mayer, Christoph; Schwarzer, Julia; Leese, Florian (2013). Isolation and characterization of nine polymorphic microsatellite markers for the deep-sea shrimp Nematocarcinus lanceopes (Crustacea: Decapoda: Caridea). BMC research notes, 6(1), p. 75. Biomed Central 10.1186/1756-0500-6-75 <http://dx.doi.org/10.1186/1756-0500-6-75> |
op_relation |
https://boris.unibe.ch/44154/ |
op_rights |
info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1186/1756-0500-6-75 |
container_title |
BMC Research Notes |
container_volume |
6 |
container_issue |
1 |
_version_ |
1797582263492280320 |