Toward a global reference database of COI barcodes for marine zooplankton
Characterization of species diversity of zooplankton is key to understanding, assessing, and predicting the function and future of pelagic ecosystems throughout the global ocean. The marine zooplankton assemblage, including only metazoans, is highly diverse and taxonomically complex, with an estimat...
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ftunivbergen:oai:bora.uib.no:11250/2824995 2023-05-15T15:09:26+02:00 Toward a global reference database of COI barcodes for marine zooplankton Bucklin, Ann Peijnenburg, Katja T. C. A. Kosobokova, Ksenia N. O’Brien, Todd Blanco-Bercial, Leocadio Cornils, Astrid Falkenhaug, Tone Hopcroft, Russ Hosia, Aino Laila Johanna Laakmann, Silke Li, Chaolun Martell, Luis Questel, Jennifer M. Wall-Palmer, Deborah Wang, Minxiao Wiebe, Peter H. Weydmann-Zwolicka, Agata 2021 application/pdf https://hdl.handle.net/11250/2824995 https://doi.org/10.1007/s00227-021-03887-y eng eng Springer Artsdatabanken: 70184233 Artsdatabanken: 70184240 Artsdatabanken: 70184241 EC/H2020/746186 urn:issn:0025-3162 https://hdl.handle.net/11250/2824995 https://doi.org/10.1007/s00227-021-03887-y cristin:1931403 Marine Biology. 2021, 168, 78. Navngivelse 4.0 Internasjonal http://creativecommons.org/licenses/by/4.0/deed.no Copyright The Author(s) 2021. 78 Marine Biology 168 Journal article Peer reviewed 2021 ftunivbergen https://doi.org/10.1007/s00227-021-03887-y 2023-03-14T17:38:51Z Characterization of species diversity of zooplankton is key to understanding, assessing, and predicting the function and future of pelagic ecosystems throughout the global ocean. The marine zooplankton assemblage, including only metazoans, is highly diverse and taxonomically complex, with an estimated ~28,000 species of 41 major taxonomic groups. This review provides a comprehensive summary of DNA sequences for the barcode region of mitochondrial cytochrome oxidase I (COI) for identified specimens. The foundation of this summary is the MetaZooGene Barcode Atlas and Database (MZGdb), a new open-access data and metadata portal that is linked to NCBI GenBank and BOLD data repositories. The MZGdb provides enhanced quality control and tools for assembling COI reference sequence databases that are specific to selected taxonomic groups and/or ocean regions, with associated metadata (e.g., collection georeferencing, verification of species identification, molecular protocols), and tools for statistical analysis, mapping, and visualization. To date, over 150,000 COI sequences for ~ 5600 described species of marine metazoan plankton (including holo- and meroplankton) are available via the MZGdb portal. This review uses the MZGdb as a resource for summaries of COI barcode data and metadata for important taxonomic groups of marine zooplankton and selected regions, including the North Atlantic, Arctic, North Pacific, and Southern Oceans. The MZGdb is designed to provide a foundation for analysis of species diversity of marine zooplankton based on DNA barcoding and metabarcoding for assessment of marine ecosystems and rapid detection of the impacts of climate change. publishedVersion Article in Journal/Newspaper Arctic Atlantic Arctic Atlantic-Arctic Climate change North Atlantic Zooplankton University of Bergen: Bergen Open Research Archive (BORA-UiB) Arctic Holo ENVELOPE(9.954,9.954,63.343,63.343) Pacific Marine Biology 168 6 |
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Open Polar |
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University of Bergen: Bergen Open Research Archive (BORA-UiB) |
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ftunivbergen |
language |
English |
description |
Characterization of species diversity of zooplankton is key to understanding, assessing, and predicting the function and future of pelagic ecosystems throughout the global ocean. The marine zooplankton assemblage, including only metazoans, is highly diverse and taxonomically complex, with an estimated ~28,000 species of 41 major taxonomic groups. This review provides a comprehensive summary of DNA sequences for the barcode region of mitochondrial cytochrome oxidase I (COI) for identified specimens. The foundation of this summary is the MetaZooGene Barcode Atlas and Database (MZGdb), a new open-access data and metadata portal that is linked to NCBI GenBank and BOLD data repositories. The MZGdb provides enhanced quality control and tools for assembling COI reference sequence databases that are specific to selected taxonomic groups and/or ocean regions, with associated metadata (e.g., collection georeferencing, verification of species identification, molecular protocols), and tools for statistical analysis, mapping, and visualization. To date, over 150,000 COI sequences for ~ 5600 described species of marine metazoan plankton (including holo- and meroplankton) are available via the MZGdb portal. This review uses the MZGdb as a resource for summaries of COI barcode data and metadata for important taxonomic groups of marine zooplankton and selected regions, including the North Atlantic, Arctic, North Pacific, and Southern Oceans. The MZGdb is designed to provide a foundation for analysis of species diversity of marine zooplankton based on DNA barcoding and metabarcoding for assessment of marine ecosystems and rapid detection of the impacts of climate change. publishedVersion |
format |
Article in Journal/Newspaper |
author |
Bucklin, Ann Peijnenburg, Katja T. C. A. Kosobokova, Ksenia N. O’Brien, Todd Blanco-Bercial, Leocadio Cornils, Astrid Falkenhaug, Tone Hopcroft, Russ Hosia, Aino Laila Johanna Laakmann, Silke Li, Chaolun Martell, Luis Questel, Jennifer M. Wall-Palmer, Deborah Wang, Minxiao Wiebe, Peter H. Weydmann-Zwolicka, Agata |
spellingShingle |
Bucklin, Ann Peijnenburg, Katja T. C. A. Kosobokova, Ksenia N. O’Brien, Todd Blanco-Bercial, Leocadio Cornils, Astrid Falkenhaug, Tone Hopcroft, Russ Hosia, Aino Laila Johanna Laakmann, Silke Li, Chaolun Martell, Luis Questel, Jennifer M. Wall-Palmer, Deborah Wang, Minxiao Wiebe, Peter H. Weydmann-Zwolicka, Agata Toward a global reference database of COI barcodes for marine zooplankton |
author_facet |
Bucklin, Ann Peijnenburg, Katja T. C. A. Kosobokova, Ksenia N. O’Brien, Todd Blanco-Bercial, Leocadio Cornils, Astrid Falkenhaug, Tone Hopcroft, Russ Hosia, Aino Laila Johanna Laakmann, Silke Li, Chaolun Martell, Luis Questel, Jennifer M. Wall-Palmer, Deborah Wang, Minxiao Wiebe, Peter H. Weydmann-Zwolicka, Agata |
author_sort |
Bucklin, Ann |
title |
Toward a global reference database of COI barcodes for marine zooplankton |
title_short |
Toward a global reference database of COI barcodes for marine zooplankton |
title_full |
Toward a global reference database of COI barcodes for marine zooplankton |
title_fullStr |
Toward a global reference database of COI barcodes for marine zooplankton |
title_full_unstemmed |
Toward a global reference database of COI barcodes for marine zooplankton |
title_sort |
toward a global reference database of coi barcodes for marine zooplankton |
publisher |
Springer |
publishDate |
2021 |
url |
https://hdl.handle.net/11250/2824995 https://doi.org/10.1007/s00227-021-03887-y |
long_lat |
ENVELOPE(9.954,9.954,63.343,63.343) |
geographic |
Arctic Holo Pacific |
geographic_facet |
Arctic Holo Pacific |
genre |
Arctic Atlantic Arctic Atlantic-Arctic Climate change North Atlantic Zooplankton |
genre_facet |
Arctic Atlantic Arctic Atlantic-Arctic Climate change North Atlantic Zooplankton |
op_source |
78 Marine Biology 168 |
op_relation |
Artsdatabanken: 70184233 Artsdatabanken: 70184240 Artsdatabanken: 70184241 EC/H2020/746186 urn:issn:0025-3162 https://hdl.handle.net/11250/2824995 https://doi.org/10.1007/s00227-021-03887-y cristin:1931403 Marine Biology. 2021, 168, 78. |
op_rights |
Navngivelse 4.0 Internasjonal http://creativecommons.org/licenses/by/4.0/deed.no Copyright The Author(s) 2021. |
op_doi |
https://doi.org/10.1007/s00227-021-03887-y |
container_title |
Marine Biology |
container_volume |
168 |
container_issue |
6 |
_version_ |
1766340627028508672 |