Evaluating ND1 and Cytb mitochondrial genes as markers for diversity analysis of protected White-tailed eagle species from Serbia
White-tailed eagle is the biggest bird of prey in Central and Southeast Europe. In Serbia it inhabits the Vojvodina province and the valleys of Danube, Sava, Tisa and Tamiš. Anthropogenic pressure on its habitats in Europe caused a decline in its numbers, but due to the strict laws protecting both s...
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Belgrade : Institute of molecular genetics and genetic engineering
2023
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ftunivbelgimgge:oai:imagine.imgge.bg.ac.rs:123456789/2019 2024-06-23T07:57:25+00:00 Evaluating ND1 and Cytb mitochondrial genes as markers for diversity analysis of protected White-tailed eagle species from Serbia Davidović, Slobodan Stanković, Milica Erić, Pavle Erić, Katarina Morić, Ivana Đorđević, Valentina 2023 https://imagine.imgge.bg.ac.rs/handle/123456789/2019 https://belbi.bg.ac.rs/ https://imagine.imgge.bg.ac.rs/bitstream/id/315009/BELBI-Abstracts-final-07072023_1-15,95,129.pdf https://hdl.handle.net/21.15107/rcub_imagine_2019 en eng Belgrade : Institute of molecular genetics and genetic engineering 978-86-82679-14-1 https://belbi.bg.ac.rs/ https://imagine.imgge.bg.ac.rs/handle/123456789/2019 https://imagine.imgge.bg.ac.rs/bitstream/id/315009/BELBI-Abstracts-final-07072023_1-15,95,129.pdf https://hdl.handle.net/21.15107/rcub_imagine_2019 openAccess ARR © 2023 Institute of Molecular Genetics and Genetic Engineering, University of Belgrade 4th Belgrade Bioinformatics Conference sequencing population genetics genetic markers genetic diversity protected species conferenceObject publishedVersion 2023 ftunivbelgimgge 2024-06-05T23:42:27Z White-tailed eagle is the biggest bird of prey in Central and Southeast Europe. In Serbia it inhabits the Vojvodina province and the valleys of Danube, Sava, Tisa and Tamiš. Anthropogenic pressure on its habitats in Europe caused a decline in its numbers, but due to the strict laws protecting both species and its habitats, birds’ numbers are now steady and increasing. In Serbia, as a strictly protected species it is a subject of different conservation programs. The available genetic data for this population are scarce and it is necessary to assess its genetic diversity to improve the existing conservation efforts. ND1 and Cytb mitochondrial genes can be used to estimate the populations’ adaptation to different environmental conditions and their variability can potentially be used to evaluate differentiation between populations. To assess the genetic diversity of White-tailed eagle in Serbia we used mitochondrial ND1 and Cytb nucleotide sequences from 40 unrelated birds collected in nests. ND1 and Cytb nucleotide sequences variability was evaluated using standard parameters of genetic diversity (PGD). Acquired values were compared with the available data for the variability of the D-loop region which showed that combined ND1/Cytb nucleotide sequences PGD provide comparable results. Using publicly available sequences we reconstructed haplotype networks for ND1, Cytb, ND1/Cytb and D-loop which further showed the applicability of ND1/ Cytb in population genetics analyses. Phylogeny reconstructed using combined ND1/Cytb sequences identified two branches in Serbian white-tailed eagles. Although the majority of substitutions were nonsynonymous, no selective pressure was detected. Our data suggest that combined ND1/Cytb sequence variability provides sufficient information to be used for population comparison, population differentiation analyses and phylogeny reconstruction, but also gives a tool to potentially identify adaptations to different environmental conditions. Book of abstract: 4th Belgrade Bioinformatics ... Conference Object White-tailed eagle IMAGINE - Repository of the Institute of molecular genetics and genetic engineering |
institution |
Open Polar |
collection |
IMAGINE - Repository of the Institute of molecular genetics and genetic engineering |
op_collection_id |
ftunivbelgimgge |
language |
English |
topic |
sequencing population genetics genetic markers genetic diversity protected species |
spellingShingle |
sequencing population genetics genetic markers genetic diversity protected species Davidović, Slobodan Stanković, Milica Erić, Pavle Erić, Katarina Evaluating ND1 and Cytb mitochondrial genes as markers for diversity analysis of protected White-tailed eagle species from Serbia |
topic_facet |
sequencing population genetics genetic markers genetic diversity protected species |
description |
White-tailed eagle is the biggest bird of prey in Central and Southeast Europe. In Serbia it inhabits the Vojvodina province and the valleys of Danube, Sava, Tisa and Tamiš. Anthropogenic pressure on its habitats in Europe caused a decline in its numbers, but due to the strict laws protecting both species and its habitats, birds’ numbers are now steady and increasing. In Serbia, as a strictly protected species it is a subject of different conservation programs. The available genetic data for this population are scarce and it is necessary to assess its genetic diversity to improve the existing conservation efforts. ND1 and Cytb mitochondrial genes can be used to estimate the populations’ adaptation to different environmental conditions and their variability can potentially be used to evaluate differentiation between populations. To assess the genetic diversity of White-tailed eagle in Serbia we used mitochondrial ND1 and Cytb nucleotide sequences from 40 unrelated birds collected in nests. ND1 and Cytb nucleotide sequences variability was evaluated using standard parameters of genetic diversity (PGD). Acquired values were compared with the available data for the variability of the D-loop region which showed that combined ND1/Cytb nucleotide sequences PGD provide comparable results. Using publicly available sequences we reconstructed haplotype networks for ND1, Cytb, ND1/Cytb and D-loop which further showed the applicability of ND1/ Cytb in population genetics analyses. Phylogeny reconstructed using combined ND1/Cytb sequences identified two branches in Serbian white-tailed eagles. Although the majority of substitutions were nonsynonymous, no selective pressure was detected. Our data suggest that combined ND1/Cytb sequence variability provides sufficient information to be used for population comparison, population differentiation analyses and phylogeny reconstruction, but also gives a tool to potentially identify adaptations to different environmental conditions. Book of abstract: 4th Belgrade Bioinformatics ... |
author2 |
Morić, Ivana Đorđević, Valentina |
format |
Conference Object |
author |
Davidović, Slobodan Stanković, Milica Erić, Pavle Erić, Katarina |
author_facet |
Davidović, Slobodan Stanković, Milica Erić, Pavle Erić, Katarina |
author_sort |
Davidović, Slobodan |
title |
Evaluating ND1 and Cytb mitochondrial genes as markers for diversity analysis of protected White-tailed eagle species from Serbia |
title_short |
Evaluating ND1 and Cytb mitochondrial genes as markers for diversity analysis of protected White-tailed eagle species from Serbia |
title_full |
Evaluating ND1 and Cytb mitochondrial genes as markers for diversity analysis of protected White-tailed eagle species from Serbia |
title_fullStr |
Evaluating ND1 and Cytb mitochondrial genes as markers for diversity analysis of protected White-tailed eagle species from Serbia |
title_full_unstemmed |
Evaluating ND1 and Cytb mitochondrial genes as markers for diversity analysis of protected White-tailed eagle species from Serbia |
title_sort |
evaluating nd1 and cytb mitochondrial genes as markers for diversity analysis of protected white-tailed eagle species from serbia |
publisher |
Belgrade : Institute of molecular genetics and genetic engineering |
publishDate |
2023 |
url |
https://imagine.imgge.bg.ac.rs/handle/123456789/2019 https://belbi.bg.ac.rs/ https://imagine.imgge.bg.ac.rs/bitstream/id/315009/BELBI-Abstracts-final-07072023_1-15,95,129.pdf https://hdl.handle.net/21.15107/rcub_imagine_2019 |
genre |
White-tailed eagle |
genre_facet |
White-tailed eagle |
op_source |
4th Belgrade Bioinformatics Conference |
op_relation |
978-86-82679-14-1 https://belbi.bg.ac.rs/ https://imagine.imgge.bg.ac.rs/handle/123456789/2019 https://imagine.imgge.bg.ac.rs/bitstream/id/315009/BELBI-Abstracts-final-07072023_1-15,95,129.pdf https://hdl.handle.net/21.15107/rcub_imagine_2019 |
op_rights |
openAccess ARR © 2023 Institute of Molecular Genetics and Genetic Engineering, University of Belgrade |
_version_ |
1802651043247423488 |