Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: the role of the last glaciation

22 pages International audience One of the most relevant characteristics of the extant Southern Ocean fauna is its resiliency to survive glacial processes of the Quaternary. These climatic events produced catastrophic habitat reductions and forced some marine benthic species to move, adapt or go ext...

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Published in:PLOS ONE
Main Authors: Díaz, Angie, Gérard, Karin, González-Wevar, Claudio, Maturana, Claudia, Feral, Jean-Pierre, David, Bruno, Saucède, Thomas, Poulin, Elie
Other Authors: Departamento de Zoología, Universidad de Concepción = University of Concepción Chile (UdeC), Facultad de Ciencias, Universidad de Magallanes (UMAG), Laboratorio de Ecología Molecular Antártica y Subantártica, Instituto de Ciencias Marinas y Limnológicas, Universidad Austral de Chile, Instituto de Ecología y Biodiversidad (IEB), Institut méditerranéen de biodiversité et d'écologie marine et continentale (IMBE), Avignon Université (AU)-Aix Marseille Université (AMU)-Institut de recherche pour le développement IRD : UMR237-Centre National de la Recherche Scientifique (CNRS), Biogéosciences UMR 6282 (BGS), Université de Bourgogne (UB)-Centre National de la Recherche Scientifique (CNRS), Muséum national d'Histoire naturelle (MNHN), Study funded by different projects and institutions including INACH D 05–09 and Conicyt Ph.D. Grant (D-21080136).
Format: Article in Journal/Newspaper
Language:English
Published: HAL CCSD 2018
Subjects:
Online Access:https://hal.science/hal-01821689
https://hal.science/hal-01821689/document
https://hal.science/hal-01821689/file/journal.pone.0197611.pdf
https://doi.org/10.1371/journal.pone.0197611
id ftunivavignon:oai:HAL:hal-01821689v1
record_format openpolar
institution Open Polar
collection Université d'Avignon et des Pays de Vaucluse: HAL
op_collection_id ftunivavignon
language English
topic Antarctica
Haplotypes
Phylogeography
Population genetics
Genetic loci
Islands
Species diversity
Antarctic Ocean
[SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]
spellingShingle Antarctica
Haplotypes
Phylogeography
Population genetics
Genetic loci
Islands
Species diversity
Antarctic Ocean
[SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]
Díaz, Angie
Gérard, Karin
González-Wevar, Claudio
Maturana, Claudia
Feral, Jean-Pierre
David, Bruno
Saucède, Thomas
Poulin, Elie
Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: the role of the last glaciation
topic_facet Antarctica
Haplotypes
Phylogeography
Population genetics
Genetic loci
Islands
Species diversity
Antarctic Ocean
[SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE]
description 22 pages International audience One of the most relevant characteristics of the extant Southern Ocean fauna is its resiliency to survive glacial processes of the Quaternary. These climatic events produced catastrophic habitat reductions and forced some marine benthic species to move, adapt or go extinct. The marine benthic species inhabiting the Antarctic upper continental shelf faced the Quaternary glaciations with different strategies that drastically modified population sizes and thus affected the amount and distribution of intraspecific genetic variation. Here we present new genetic information for the most conspicuous regular sea urchin of the Antarctic continental shelf, Sterechinus neumayeri. We studied the patterns of genetic diversity and structure in this broadcast-spawner across three Antarctic regions: Antarctic Peninsula, the Weddell Sea and Adélie Land in East Antarctica. Genetic analyses based on mitochondrial and nuclear markers suggested that S. neumayeri is a single genetic unit around the Antarctic continent. The species is characterized by low levels of genetic diversity and exhibits a typical star-like haplotype genealogy that supports the hypothesis of a single in situ refugium. Based on two mutation rates standardized for this genus, the Bayesian Skyline plot analyses detected a rapid demographic expansion after the Last Glacial Maximum. We propose a scenario of rapid postglacial expansion and recolonization of Antarctic shallow areas from a less ice-impacted refugium where the species survived the LGM. Considering the patterns of genetic diversity and structure recorded in the species, this refugium was probably located in East Antarctica.
author2 Departamento de Zoología
Universidad de Concepción = University of Concepción Chile (UdeC)
Facultad de Ciencias
Universidad de Magallanes (UMAG)
Laboratorio de Ecología Molecular Antártica y Subantártica
Instituto de Ciencias Marinas y Limnológicas
Universidad Austral de Chile
Instituto de Ecología y Biodiversidad (IEB)
Institut méditerranéen de biodiversité et d'écologie marine et continentale (IMBE)
Avignon Université (AU)-Aix Marseille Université (AMU)-Institut de recherche pour le développement IRD : UMR237-Centre National de la Recherche Scientifique (CNRS)
Biogéosciences UMR 6282 (BGS)
Université de Bourgogne (UB)-Centre National de la Recherche Scientifique (CNRS)
Muséum national d'Histoire naturelle (MNHN)
Study funded by different projects and institutions including INACH D 05–09 and Conicyt Ph.D. Grant (D-21080136).
format Article in Journal/Newspaper
author Díaz, Angie
Gérard, Karin
González-Wevar, Claudio
Maturana, Claudia
Feral, Jean-Pierre
David, Bruno
Saucède, Thomas
Poulin, Elie
author_facet Díaz, Angie
Gérard, Karin
González-Wevar, Claudio
Maturana, Claudia
Feral, Jean-Pierre
David, Bruno
Saucède, Thomas
Poulin, Elie
author_sort Díaz, Angie
title Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: the role of the last glaciation
title_short Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: the role of the last glaciation
title_full Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: the role of the last glaciation
title_fullStr Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: the role of the last glaciation
title_full_unstemmed Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: the role of the last glaciation
title_sort genetic structure and demographic inference of the regular sea urchin sterechinus neumayeri (meissner, 1900) in the southern ocean: the role of the last glaciation
publisher HAL CCSD
publishDate 2018
url https://hal.science/hal-01821689
https://hal.science/hal-01821689/document
https://hal.science/hal-01821689/file/journal.pone.0197611.pdf
https://doi.org/10.1371/journal.pone.0197611
genre Antarc*
Antarctic
Antarctic Ocean
Antarctic Peninsula
Antarctica
East Antarctica
Southern Ocean
Weddell Sea
genre_facet Antarc*
Antarctic
Antarctic Ocean
Antarctic Peninsula
Antarctica
East Antarctica
Southern Ocean
Weddell Sea
op_source ISSN: 1932-6203
EISSN: 1932-6203
PLoS ONE
https://hal.science/hal-01821689
PLoS ONE, 2018, 13 (6), pp.e0197611. ⟨10.1371/journal.pone.0197611⟩
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0197611
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hal-01821689
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https://hal.science/hal-01821689/document
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doi:10.1371/journal.pone.0197611
PUBMED: 29874287
PUBMEDCENTRAL: PMC5991379
op_rights http://creativecommons.org/licenses/by/
info:eu-repo/semantics/OpenAccess
op_doi https://doi.org/10.1371/journal.pone.0197611
container_title PLOS ONE
container_volume 13
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spelling ftunivavignon:oai:HAL:hal-01821689v1 2024-09-15T17:44:16+00:00 Genetic structure and demographic inference of the regular sea urchin Sterechinus neumayeri (Meissner, 1900) in the Southern Ocean: the role of the last glaciation Díaz, Angie Gérard, Karin González-Wevar, Claudio Maturana, Claudia Feral, Jean-Pierre David, Bruno Saucède, Thomas Poulin, Elie Departamento de Zoología Universidad de Concepción = University of Concepción Chile (UdeC) Facultad de Ciencias Universidad de Magallanes (UMAG) Laboratorio de Ecología Molecular Antártica y Subantártica Instituto de Ciencias Marinas y Limnológicas Universidad Austral de Chile Instituto de Ecología y Biodiversidad (IEB) Institut méditerranéen de biodiversité et d'écologie marine et continentale (IMBE) Avignon Université (AU)-Aix Marseille Université (AMU)-Institut de recherche pour le développement IRD : UMR237-Centre National de la Recherche Scientifique (CNRS) Biogéosciences UMR 6282 (BGS) Université de Bourgogne (UB)-Centre National de la Recherche Scientifique (CNRS) Muséum national d'Histoire naturelle (MNHN) Study funded by different projects and institutions including INACH D 05–09 and Conicyt Ph.D. Grant (D-21080136). 2018-06-06 https://hal.science/hal-01821689 https://hal.science/hal-01821689/document https://hal.science/hal-01821689/file/journal.pone.0197611.pdf https://doi.org/10.1371/journal.pone.0197611 en eng HAL CCSD Public Library of Science info:eu-repo/semantics/altIdentifier/doi/10.1371/journal.pone.0197611 info:eu-repo/semantics/altIdentifier/pmid/29874287 hal-01821689 https://hal.science/hal-01821689 https://hal.science/hal-01821689/document https://hal.science/hal-01821689/file/journal.pone.0197611.pdf doi:10.1371/journal.pone.0197611 PUBMED: 29874287 PUBMEDCENTRAL: PMC5991379 http://creativecommons.org/licenses/by/ info:eu-repo/semantics/OpenAccess ISSN: 1932-6203 EISSN: 1932-6203 PLoS ONE https://hal.science/hal-01821689 PLoS ONE, 2018, 13 (6), pp.e0197611. ⟨10.1371/journal.pone.0197611⟩ http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0197611 Antarctica Haplotypes Phylogeography Population genetics Genetic loci Islands Species diversity Antarctic Ocean [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE] info:eu-repo/semantics/article Journal articles 2018 ftunivavignon https://doi.org/10.1371/journal.pone.0197611 2024-07-15T23:39:45Z 22 pages International audience One of the most relevant characteristics of the extant Southern Ocean fauna is its resiliency to survive glacial processes of the Quaternary. These climatic events produced catastrophic habitat reductions and forced some marine benthic species to move, adapt or go extinct. The marine benthic species inhabiting the Antarctic upper continental shelf faced the Quaternary glaciations with different strategies that drastically modified population sizes and thus affected the amount and distribution of intraspecific genetic variation. Here we present new genetic information for the most conspicuous regular sea urchin of the Antarctic continental shelf, Sterechinus neumayeri. We studied the patterns of genetic diversity and structure in this broadcast-spawner across three Antarctic regions: Antarctic Peninsula, the Weddell Sea and Adélie Land in East Antarctica. Genetic analyses based on mitochondrial and nuclear markers suggested that S. neumayeri is a single genetic unit around the Antarctic continent. The species is characterized by low levels of genetic diversity and exhibits a typical star-like haplotype genealogy that supports the hypothesis of a single in situ refugium. Based on two mutation rates standardized for this genus, the Bayesian Skyline plot analyses detected a rapid demographic expansion after the Last Glacial Maximum. We propose a scenario of rapid postglacial expansion and recolonization of Antarctic shallow areas from a less ice-impacted refugium where the species survived the LGM. Considering the patterns of genetic diversity and structure recorded in the species, this refugium was probably located in East Antarctica. Article in Journal/Newspaper Antarc* Antarctic Antarctic Ocean Antarctic Peninsula Antarctica East Antarctica Southern Ocean Weddell Sea Université d'Avignon et des Pays de Vaucluse: HAL PLOS ONE 13 6 e0197611