Expanding population edge craniometrics and genetics provide insights into dispersal of commensal rats through Nusa Tenggara, Indonesia

Published: 25 November 2020 (in print and online simultaneously) The Nusa Tenggara island chain consists of an archipelago that runs roughly east-west in eastern Indonesia. As part of Wallacea, it has never been connected to any continental landmass, and has been subject to a variety of biological i...

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Published in:Records of the Australian Museum
Main Authors: Louys, J., Herrera, M.B., Thomson, V.A., Wiewel, A.S., Donnellan, S.C., O'Connor, S., Aplin, K.
Format: Article in Journal/Newspaper
Language:English
Published: Australian Museum 2020
Subjects:
Online Access:http://hdl.handle.net/2440/130326
https://doi.org/10.3853/j.2201-4349.72.2020.1730
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spelling ftunivadelaidedl:oai:digital.library.adelaide.edu.au:2440/130326 2023-12-17T10:49:14+01:00 Expanding population edge craniometrics and genetics provide insights into dispersal of commensal rats through Nusa Tenggara, Indonesia Louys, J. Herrera, M.B. Thomson, V.A. Wiewel, A.S. Donnellan, S.C. O'Connor, S. Aplin, K. 2020 application/pdf http://hdl.handle.net/2440/130326 https://doi.org/10.3853/j.2201-4349.72.2020.1730 en eng Australian Museum http://purl.org/au-research/grants/arc/FT160100450 http://purl.org/au-research/grants/arc/FL120100156 http://purl.org/au-research/grants/arc/DP0988863 http://purl.org/au-research/grants/arc/DP140103650 http://purl.org/au-research/grants/arc/CE170100015 Records of the Australian Museum, 2020; 72(5):287-302 0067-1975 2201-4349 http://hdl.handle.net/2440/130326 doi:10.3853/j.2201-4349.72.2020.1730 Thomson, V.A. [0000-0001-8368-9664] Donnellan, S.C. [0000-0002-5448-3226] Copyright: © 2020 Louys, Herrera, Thomson, Wiewel, Donnellan, O’Connor, Aplin. This is an open access article licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are credited. http://dx.doi.org/10.3853/j.2201-4349.72.2020.1730 Rattus black rat Pacific rat ricefield rat Dong Son drum maritime exchange Southeast Asia Journal article 2020 ftunivadelaidedl https://doi.org/10.3853/j.2201-4349.72.2020.1730 2023-11-20T23:31:25Z Published: 25 November 2020 (in print and online simultaneously) The Nusa Tenggara island chain consists of an archipelago that runs roughly east-west in eastern Indonesia. As part of Wallacea, it has never been connected to any continental landmass, and has been subject to a variety of biological invasions that have populated the islands. Here, we examine the craniometric and molecular genetic records of several species of Rattus sensu lato in the island chain. We use the predictions of expanding population edge phenotypic selection in an effort to understand the movement of Rattus rattus and Rattus exulans through the archipelago. We also examine the mitochondrial haplotype networks of R. argentiventer, R. exulans, and the R. rattus Complex (RrC) and microsatellite allele frequency clustering patterns for the RrC, to examine relationships within and between Nusa Tenggara populations, and those of Asia and the Pacific where relevant for each taxon. In the RrC LIV and RrC LII haplotype networks, 20 haplotypes with seven from Nusa Tenggara were observed for RrC LIV, and 100 haplotypes with seven from Nusa Tenggara observed for RrC LII. The top performing RrC craniometric model had a negative association between size and distance from the easternmost point of the samples from Nusa Tenggara, consistent with increasing size moving west to east. The cytochrome b network for the R. exulans sequences comprised 14 haplotypes, with three observed from mainland Southeast Asia, one shared with Nusa Tenggara and regions further east, and another haplotype observed in Nusa Tenggara and in the Pacific. The R. exulans craniometric model selection produced four equally well performing models, with no migration scenario preferred. Finally, the haplotype network of R. argentiventer comprised 10 haplotypes, with six observed in Nusa Tenggara, including a relatively early cluster from the east of the archipelago. Our results are compatible with a polyphasic and polydirectional invasion of Nusa Tenggara by Rattus, likely beginning ... Article in Journal/Newspaper Rattus rattus The University of Adelaide: Digital Library Pacific Records of the Australian Museum 72 5 287 302
institution Open Polar
collection The University of Adelaide: Digital Library
op_collection_id ftunivadelaidedl
language English
topic Rattus
black rat
Pacific rat
ricefield rat
Dong Son drum
maritime exchange
Southeast Asia
spellingShingle Rattus
black rat
Pacific rat
ricefield rat
Dong Son drum
maritime exchange
Southeast Asia
Louys, J.
Herrera, M.B.
Thomson, V.A.
Wiewel, A.S.
Donnellan, S.C.
O'Connor, S.
Aplin, K.
Expanding population edge craniometrics and genetics provide insights into dispersal of commensal rats through Nusa Tenggara, Indonesia
topic_facet Rattus
black rat
Pacific rat
ricefield rat
Dong Son drum
maritime exchange
Southeast Asia
description Published: 25 November 2020 (in print and online simultaneously) The Nusa Tenggara island chain consists of an archipelago that runs roughly east-west in eastern Indonesia. As part of Wallacea, it has never been connected to any continental landmass, and has been subject to a variety of biological invasions that have populated the islands. Here, we examine the craniometric and molecular genetic records of several species of Rattus sensu lato in the island chain. We use the predictions of expanding population edge phenotypic selection in an effort to understand the movement of Rattus rattus and Rattus exulans through the archipelago. We also examine the mitochondrial haplotype networks of R. argentiventer, R. exulans, and the R. rattus Complex (RrC) and microsatellite allele frequency clustering patterns for the RrC, to examine relationships within and between Nusa Tenggara populations, and those of Asia and the Pacific where relevant for each taxon. In the RrC LIV and RrC LII haplotype networks, 20 haplotypes with seven from Nusa Tenggara were observed for RrC LIV, and 100 haplotypes with seven from Nusa Tenggara observed for RrC LII. The top performing RrC craniometric model had a negative association between size and distance from the easternmost point of the samples from Nusa Tenggara, consistent with increasing size moving west to east. The cytochrome b network for the R. exulans sequences comprised 14 haplotypes, with three observed from mainland Southeast Asia, one shared with Nusa Tenggara and regions further east, and another haplotype observed in Nusa Tenggara and in the Pacific. The R. exulans craniometric model selection produced four equally well performing models, with no migration scenario preferred. Finally, the haplotype network of R. argentiventer comprised 10 haplotypes, with six observed in Nusa Tenggara, including a relatively early cluster from the east of the archipelago. Our results are compatible with a polyphasic and polydirectional invasion of Nusa Tenggara by Rattus, likely beginning ...
format Article in Journal/Newspaper
author Louys, J.
Herrera, M.B.
Thomson, V.A.
Wiewel, A.S.
Donnellan, S.C.
O'Connor, S.
Aplin, K.
author_facet Louys, J.
Herrera, M.B.
Thomson, V.A.
Wiewel, A.S.
Donnellan, S.C.
O'Connor, S.
Aplin, K.
author_sort Louys, J.
title Expanding population edge craniometrics and genetics provide insights into dispersal of commensal rats through Nusa Tenggara, Indonesia
title_short Expanding population edge craniometrics and genetics provide insights into dispersal of commensal rats through Nusa Tenggara, Indonesia
title_full Expanding population edge craniometrics and genetics provide insights into dispersal of commensal rats through Nusa Tenggara, Indonesia
title_fullStr Expanding population edge craniometrics and genetics provide insights into dispersal of commensal rats through Nusa Tenggara, Indonesia
title_full_unstemmed Expanding population edge craniometrics and genetics provide insights into dispersal of commensal rats through Nusa Tenggara, Indonesia
title_sort expanding population edge craniometrics and genetics provide insights into dispersal of commensal rats through nusa tenggara, indonesia
publisher Australian Museum
publishDate 2020
url http://hdl.handle.net/2440/130326
https://doi.org/10.3853/j.2201-4349.72.2020.1730
geographic Pacific
geographic_facet Pacific
genre Rattus rattus
genre_facet Rattus rattus
op_source http://dx.doi.org/10.3853/j.2201-4349.72.2020.1730
op_relation http://purl.org/au-research/grants/arc/FT160100450
http://purl.org/au-research/grants/arc/FL120100156
http://purl.org/au-research/grants/arc/DP0988863
http://purl.org/au-research/grants/arc/DP140103650
http://purl.org/au-research/grants/arc/CE170100015
Records of the Australian Museum, 2020; 72(5):287-302
0067-1975
2201-4349
http://hdl.handle.net/2440/130326
doi:10.3853/j.2201-4349.72.2020.1730
Thomson, V.A. [0000-0001-8368-9664]
Donnellan, S.C. [0000-0002-5448-3226]
op_rights Copyright: © 2020 Louys, Herrera, Thomson, Wiewel, Donnellan, O’Connor, Aplin. This is an open access article licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are credited.
op_doi https://doi.org/10.3853/j.2201-4349.72.2020.1730
container_title Records of the Australian Museum
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