A Temporally Dynamic Gut Microbiome in Atlantic Salmon During Freshwater Recirculating Aquaculture System (RAS) Production and Post-seawater Transfer

• Published in: Frontiers in Marine Science
• Main Authors: Lorgen-Ritchie, Marlene, Clarkson, Michael, Chalmers, Lynn, Taylor, John F., Migaud, Herve, Martin, Samuel A. M.
• Other Authors: University of Aberdeen.Biological Sciences, University of Aberdeen.Marine Alliance for Science and Technology for Scotland (MASTS), University of Aberdeen.Scottish Fish Immunology Research Centre
• Format: Article in Journal/Newspaper
• Language: English
• Published: 2021
• Subjects: aquaculture; Atlantic salmon (Salmo salar); intestine; microbiome; recirculating aquaculture systems; temporal; QH301 Biology; Biotechnology and Biological Sciences Research Council (BBSRC); BB/S004270/1; BB/S004432/1; Supplementary Information; Supplementary Data; QH301; Atlantic salmon; Salmo salar
• Online Access: https://hdl.handle.net/2164/16783; https://doi.org/10.3389/fmars.2021.711797; https://www.ncbi.nlm.nih.gov/bioproject/PRJNA729215

This study was funded by the UKRI project ROBUSTSMOLT (BBSRC BB/S004270/1 and BB/S004432/1). There was also cofunding from the Scottish Aquaculture Innovation Centre. ACKNOWLEDGMENTS The authors would like to thank John Richmond and staff at MOWI and the Centre for Genome Enabled Biology and Medicine (CGEBM) at the University of Aberdeen, particularly Dr. Ewan Campbell, for help with amplification protocols, conducting 16S library preparation and sequencing. The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found below: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA729215. Peer reviewed