The first transcriptomic resource for the Antarctic scallop Adamussium colbecki
Adamussium colbecki is one of the most common bivalve mollusks found in the coastal waters of the Antarctic continent. Its widespread distribution, easiness of collection and sensitivity to slight alterations of water temperature and presence of pollutants make this cold-adapted scallop a potentiall...
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2018
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Online Access: | http://hdl.handle.net/11368/2939548 https://doi.org/10.1016/j.margen.2018.09.007 https://www.sciencedirect.com/science/article/pii/S1874778718302046 |
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ftunitriestiris:oai:arts.units.it:11368/2939548 2023-05-15T13:45:44+02:00 The first transcriptomic resource for the Antarctic scallop Adamussium colbecki Moro, Giulia Buonocore, Francesco Barucca, Marco Spazzali, Francesca Canapa, Adriana Pallavicini, Alberto Scapigliati, Giuseppe Gerdol, Marco Moro, Giulia Buonocore, Francesco Barucca, Marco Spazzali, Francesca Canapa, Adriana Pallavicini, Alberto Scapigliati, Giuseppe Gerdol, Marco 2018 http://hdl.handle.net/11368/2939548 https://doi.org/10.1016/j.margen.2018.09.007 https://www.sciencedirect.com/science/article/pii/S1874778718302046 eng eng info:eu-repo/semantics/altIdentifier/wos/WOS:000462800700008 volume:44 firstpage:61 lastpage:64 numberofpages:4 journal:MARINE GENOMICS http://hdl.handle.net/11368/2939548 doi:10.1016/j.margen.2018.09.007 info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85054525483 https://www.sciencedirect.com/science/article/pii/S1874778718302046 info:eu-repo/semantics/closedAccess Adamussium colbecki Antarctica Bivalve Pectinida Phylogenomic Transcriptome Aquatic Science Genetics info:eu-repo/semantics/article 2018 ftunitriestiris https://doi.org/10.1016/j.margen.2018.09.007 2023-04-09T06:16:29Z Adamussium colbecki is one of the most common bivalve mollusks found in the coastal waters of the Antarctic continent. Its widespread distribution, easiness of collection and sensitivity to slight alterations of water temperature and presence of pollutants make this cold-adapted scallop a potentially interesting sentinel species for the biomonitoring of the impact of anthropic activities on the Antarctic benthic communities. However, while the availability of genetic and molecular data would represent a resource of the utmost importance to enable the use of this species as a model for environmental studies, this data is presently nearly non-existing. Here we report a high quality de novo assembled and annotated transcriptome for A. colbecki, discussing the long-debated phylogenetic position of this species within the order Pectinida through a Bayesian phylogenomics approach, based on the concatenated multiple sequence alignment of 978 universally conserved orthologous genes. Article in Journal/Newspaper Antarc* Antarctic Antarctica Università degli studi di Trieste: ArTS (Archivio della ricerca di Trieste) Antarctic The Antarctic Marine Genomics 44 61 64 |
institution |
Open Polar |
collection |
Università degli studi di Trieste: ArTS (Archivio della ricerca di Trieste) |
op_collection_id |
ftunitriestiris |
language |
English |
topic |
Adamussium colbecki Antarctica Bivalve Pectinida Phylogenomic Transcriptome Aquatic Science Genetics |
spellingShingle |
Adamussium colbecki Antarctica Bivalve Pectinida Phylogenomic Transcriptome Aquatic Science Genetics Moro, Giulia Buonocore, Francesco Barucca, Marco Spazzali, Francesca Canapa, Adriana Pallavicini, Alberto Scapigliati, Giuseppe Gerdol, Marco The first transcriptomic resource for the Antarctic scallop Adamussium colbecki |
topic_facet |
Adamussium colbecki Antarctica Bivalve Pectinida Phylogenomic Transcriptome Aquatic Science Genetics |
description |
Adamussium colbecki is one of the most common bivalve mollusks found in the coastal waters of the Antarctic continent. Its widespread distribution, easiness of collection and sensitivity to slight alterations of water temperature and presence of pollutants make this cold-adapted scallop a potentially interesting sentinel species for the biomonitoring of the impact of anthropic activities on the Antarctic benthic communities. However, while the availability of genetic and molecular data would represent a resource of the utmost importance to enable the use of this species as a model for environmental studies, this data is presently nearly non-existing. Here we report a high quality de novo assembled and annotated transcriptome for A. colbecki, discussing the long-debated phylogenetic position of this species within the order Pectinida through a Bayesian phylogenomics approach, based on the concatenated multiple sequence alignment of 978 universally conserved orthologous genes. |
author2 |
Moro, Giulia Buonocore, Francesco Barucca, Marco Spazzali, Francesca Canapa, Adriana Pallavicini, Alberto Scapigliati, Giuseppe Gerdol, Marco |
format |
Article in Journal/Newspaper |
author |
Moro, Giulia Buonocore, Francesco Barucca, Marco Spazzali, Francesca Canapa, Adriana Pallavicini, Alberto Scapigliati, Giuseppe Gerdol, Marco |
author_facet |
Moro, Giulia Buonocore, Francesco Barucca, Marco Spazzali, Francesca Canapa, Adriana Pallavicini, Alberto Scapigliati, Giuseppe Gerdol, Marco |
author_sort |
Moro, Giulia |
title |
The first transcriptomic resource for the Antarctic scallop Adamussium colbecki |
title_short |
The first transcriptomic resource for the Antarctic scallop Adamussium colbecki |
title_full |
The first transcriptomic resource for the Antarctic scallop Adamussium colbecki |
title_fullStr |
The first transcriptomic resource for the Antarctic scallop Adamussium colbecki |
title_full_unstemmed |
The first transcriptomic resource for the Antarctic scallop Adamussium colbecki |
title_sort |
first transcriptomic resource for the antarctic scallop adamussium colbecki |
publishDate |
2018 |
url |
http://hdl.handle.net/11368/2939548 https://doi.org/10.1016/j.margen.2018.09.007 https://www.sciencedirect.com/science/article/pii/S1874778718302046 |
geographic |
Antarctic The Antarctic |
geographic_facet |
Antarctic The Antarctic |
genre |
Antarc* Antarctic Antarctica |
genre_facet |
Antarc* Antarctic Antarctica |
op_relation |
info:eu-repo/semantics/altIdentifier/wos/WOS:000462800700008 volume:44 firstpage:61 lastpage:64 numberofpages:4 journal:MARINE GENOMICS http://hdl.handle.net/11368/2939548 doi:10.1016/j.margen.2018.09.007 info:eu-repo/semantics/altIdentifier/scopus/2-s2.0-85054525483 https://www.sciencedirect.com/science/article/pii/S1874778718302046 |
op_rights |
info:eu-repo/semantics/closedAccess |
op_doi |
https://doi.org/10.1016/j.margen.2018.09.007 |
container_title |
Marine Genomics |
container_volume |
44 |
container_start_page |
61 |
op_container_end_page |
64 |
_version_ |
1766230427200126976 |