Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity

We dedicate this study to the memory of our esteemed colleague Nathalie S. Nagalingum. International audience The determinants of biodiversity patterns can be understood using macroevolutionary analyses. The integration of fossils into phylogenies offers a deeper understanding of processes underlyin...

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Published in:New Phytologist
Main Authors: Coiro, Mario, Allio, Rémi, Mazet, Nathan, Seyfullah, Leyla, J., Condamine, Fabien, L
Other Authors: Universität Wien = University of Vienna, Centre de Biologie pour la Gestion des Populations (UMR CBGP), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD France-Sud )-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro Montpellier, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Université de Montpellier (UM), Institut des Sciences de l'Evolution de Montpellier (UMR ISEM), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE), Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Institut de recherche pour le développement IRD : UR226-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM), MC has been supported by the Austrian Science Fund (FWF), Lise Meitner project no. M3168. The visit of MC to the NRM and the NHM was funded by the European Union's Seventh Framework Programme (FP7/2007-2013) under grant agreement no. 226506 (SYNTHESYS project SE-TAF-5774 and project GB-TAF-5763). The computational results presented have been achieved in part using the Vienna Scientific Cluster (VSC). This project benefited from an Investissements d'Avenir' program managed by the Agence Nationale de la Recherche (CEBA, ref. ANR-10-LABX-0025) and the ANR GAARAnti project (ANR-17-CE31-0009)., ANR-10-LABX-0025,CEBA,CEnter of the study of Biodiversity in Amazonia(2010), ANR-17-CE31-0009,GAARAnti,Pont terrestre 'GAARlandia' vs voies de dispersion à travers les Petites Antilles–Couplage entre dynamique de la subduction et processus de l'évolution des espèces dans le domaine des Caraïbes.(2017), European Project: 226506,EC:FP7:INFRA,FP7-INFRASTRUCTURES-2008-1,SYNTHESYS(2009)
Format: Article in Journal/Newspaper
Language:English
Published: HAL CCSD 2023
Subjects:
Online Access:https://hal.inrae.fr/hal-04144335
https://hal.inrae.fr/hal-04144335/document
https://hal.inrae.fr/hal-04144335/file/New%20Phytologist%20-%202023%20-%20Coiro.pdf
https://doi.org/10.1111/nph.19010
id ftunimontpellier:oai:HAL:hal-04144335v1
record_format openpolar
institution Open Polar
collection Université de Montpellier: HAL
op_collection_id ftunimontpellier
language English
topic Antarctica
Cycadales
Fossil leaves
Greenland
Historical biogeography
Total-evidence analysis
MESH: Bayes Theorem
MESH: Biodiversity
MESH: Cycadopsida
MESH: Fossils
MESH: Phylogeny
[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]
[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics
Phylogenetics and taxonomy
spellingShingle Antarctica
Cycadales
Fossil leaves
Greenland
Historical biogeography
Total-evidence analysis
MESH: Bayes Theorem
MESH: Biodiversity
MESH: Cycadopsida
MESH: Fossils
MESH: Phylogeny
[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]
[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics
Phylogenetics and taxonomy
Coiro, Mario
Allio, Rémi
Mazet, Nathan
Seyfullah, Leyla, J.
Condamine, Fabien, L
Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity
topic_facet Antarctica
Cycadales
Fossil leaves
Greenland
Historical biogeography
Total-evidence analysis
MESH: Bayes Theorem
MESH: Biodiversity
MESH: Cycadopsida
MESH: Fossils
MESH: Phylogeny
[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]
[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics
Phylogenetics and taxonomy
description We dedicate this study to the memory of our esteemed colleague Nathalie S. Nagalingum. International audience The determinants of biodiversity patterns can be understood using macroevolutionary analyses. The integration of fossils into phylogenies offers a deeper understanding of processes underlying biodiversity patterns in deep time. Cycadales are considered a relict of a once more diverse and globally distributed group but are restricted to low latitudes today. We still know little about their origin and geographic range evolution. Combining molecular data for extant species and leaf morphological data for extant and fossil species, we study the origin of cycad global biodiversity patterns through Bayesian totalevidence dating analyses. We assess the ancestral geographic origin and trace the historical biogeography of cycads with a time-stratified process-based model. Cycads originated in the Carboniferous on the Laurasian landmass and expanded in Gondwana in the Jurassic. Through now-vanished continental connections, Antarctica and Greenland were crucial biogeographic crossroads for cycad biogeography. Vicariance is an essential speciation mode in the deep and recent past. Their latitudinal span increased in the Jurassic and restrained toward subtropical latitudes in the Neogene in line with biogeographic inferences of high-latitude extirpations. We show the benefits of integrating fossils into phylogenies to estimate ancestral areas of origin and to study evolutionary processes explaining the global distribution of present-day relict groups.
author2 Universität Wien = University of Vienna
Centre de Biologie pour la Gestion des Populations (UMR CBGP)
Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD France-Sud )-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro Montpellier
Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Université de Montpellier (UM)
Institut des Sciences de l'Evolution de Montpellier (UMR ISEM)
Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE)
Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Institut de recherche pour le développement IRD : UR226-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)
MC has been supported by the Austrian Science Fund (FWF), Lise Meitner project no. M3168. The visit of MC to the NRM and the NHM was funded by the European Union's Seventh Framework Programme (FP7/2007-2013) under grant agreement no. 226506 (SYNTHESYS project SE-TAF-5774 and project GB-TAF-5763). The computational results presented have been achieved in part using the Vienna Scientific Cluster (VSC). This project benefited from an Investissements d'Avenir' program managed by the Agence Nationale de la Recherche (CEBA, ref. ANR-10-LABX-0025) and the ANR GAARAnti project (ANR-17-CE31-0009).
ANR-10-LABX-0025,CEBA,CEnter of the study of Biodiversity in Amazonia(2010)
ANR-17-CE31-0009,GAARAnti,Pont terrestre 'GAARlandia' vs voies de dispersion à travers les Petites Antilles–Couplage entre dynamique de la subduction et processus de l'évolution des espèces dans le domaine des Caraïbes.(2017)
European Project: 226506,EC:FP7:INFRA,FP7-INFRASTRUCTURES-2008-1,SYNTHESYS(2009)
format Article in Journal/Newspaper
author Coiro, Mario
Allio, Rémi
Mazet, Nathan
Seyfullah, Leyla, J.
Condamine, Fabien, L
author_facet Coiro, Mario
Allio, Rémi
Mazet, Nathan
Seyfullah, Leyla, J.
Condamine, Fabien, L
author_sort Coiro, Mario
title Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity
title_short Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity
title_full Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity
title_fullStr Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity
title_full_unstemmed Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity
title_sort reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity
publisher HAL CCSD
publishDate 2023
url https://hal.inrae.fr/hal-04144335
https://hal.inrae.fr/hal-04144335/document
https://hal.inrae.fr/hal-04144335/file/New%20Phytologist%20-%202023%20-%20Coiro.pdf
https://doi.org/10.1111/nph.19010
geographic Greenland
geographic_facet Greenland
genre Antarc*
Antarctica
Greenland
genre_facet Antarc*
Antarctica
Greenland
op_source ISSN: 0028-646X
EISSN: 1469-8137
New Phytologist
https://hal.inrae.fr/hal-04144335
New Phytologist, 2023, 240 (4), pp.1616-1635. ⟨10.1111/nph.19010⟩
https://nph.onlinelibrary.wiley.com/doi/epdf/10.1111/nph.19010
op_relation info:eu-repo/semantics/altIdentifier/doi/10.1111/nph.19010
info:eu-repo/semantics/altIdentifier/pmid/37302411
info:eu-repo/grantAgreement/EC/FP7/226506/EU/Synthesis of Systematic Resources/SYNTHESYS
hal-04144335
https://hal.inrae.fr/hal-04144335
https://hal.inrae.fr/hal-04144335/document
https://hal.inrae.fr/hal-04144335/file/New%20Phytologist%20-%202023%20-%20Coiro.pdf
doi:10.1111/nph.19010
PUBMED: 37302411
WOS: 001007030000001
op_rights http://creativecommons.org/licenses/by-nc-nd/
info:eu-repo/semantics/OpenAccess
op_doi https://doi.org/10.1111/nph.19010
container_title New Phytologist
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spelling ftunimontpellier:oai:HAL:hal-04144335v1 2024-06-23T07:45:43+00:00 Reconciling fossils with phylogenies reveals the origin and macroevolutionary processes explaining the global cycad biodiversity Coiro, Mario Allio, Rémi Mazet, Nathan Seyfullah, Leyla, J. Condamine, Fabien, L Universität Wien = University of Vienna Centre de Biologie pour la Gestion des Populations (UMR CBGP) Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut de Recherche pour le Développement (IRD France-Sud )-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Institut Agro Montpellier Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Université de Montpellier (UM) Institut des Sciences de l'Evolution de Montpellier (UMR ISEM) Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-École Pratique des Hautes Études (EPHE) Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Institut de recherche pour le développement IRD : UR226-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM) MC has been supported by the Austrian Science Fund (FWF), Lise Meitner project no. M3168. The visit of MC to the NRM and the NHM was funded by the European Union's Seventh Framework Programme (FP7/2007-2013) under grant agreement no. 226506 (SYNTHESYS project SE-TAF-5774 and project GB-TAF-5763). The computational results presented have been achieved in part using the Vienna Scientific Cluster (VSC). This project benefited from an Investissements d'Avenir' program managed by the Agence Nationale de la Recherche (CEBA, ref. ANR-10-LABX-0025) and the ANR GAARAnti project (ANR-17-CE31-0009). ANR-10-LABX-0025,CEBA,CEnter of the study of Biodiversity in Amazonia(2010) ANR-17-CE31-0009,GAARAnti,Pont terrestre 'GAARlandia' vs voies de dispersion à travers les Petites Antilles–Couplage entre dynamique de la subduction et processus de l'évolution des espèces dans le domaine des Caraïbes.(2017) European Project: 226506,EC:FP7:INFRA,FP7-INFRASTRUCTURES-2008-1,SYNTHESYS(2009) 2023-11 https://hal.inrae.fr/hal-04144335 https://hal.inrae.fr/hal-04144335/document https://hal.inrae.fr/hal-04144335/file/New%20Phytologist%20-%202023%20-%20Coiro.pdf https://doi.org/10.1111/nph.19010 en eng HAL CCSD Wiley info:eu-repo/semantics/altIdentifier/doi/10.1111/nph.19010 info:eu-repo/semantics/altIdentifier/pmid/37302411 info:eu-repo/grantAgreement/EC/FP7/226506/EU/Synthesis of Systematic Resources/SYNTHESYS hal-04144335 https://hal.inrae.fr/hal-04144335 https://hal.inrae.fr/hal-04144335/document https://hal.inrae.fr/hal-04144335/file/New%20Phytologist%20-%202023%20-%20Coiro.pdf doi:10.1111/nph.19010 PUBMED: 37302411 WOS: 001007030000001 http://creativecommons.org/licenses/by-nc-nd/ info:eu-repo/semantics/OpenAccess ISSN: 0028-646X EISSN: 1469-8137 New Phytologist https://hal.inrae.fr/hal-04144335 New Phytologist, 2023, 240 (4), pp.1616-1635. ⟨10.1111/nph.19010⟩ https://nph.onlinelibrary.wiley.com/doi/epdf/10.1111/nph.19010 Antarctica Cycadales Fossil leaves Greenland Historical biogeography Total-evidence analysis MESH: Bayes Theorem MESH: Biodiversity MESH: Cycadopsida MESH: Fossils MESH: Phylogeny [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomy info:eu-repo/semantics/article Journal articles 2023 ftunimontpellier https://doi.org/10.1111/nph.19010 2024-06-03T14:20:52Z We dedicate this study to the memory of our esteemed colleague Nathalie S. Nagalingum. International audience The determinants of biodiversity patterns can be understood using macroevolutionary analyses. The integration of fossils into phylogenies offers a deeper understanding of processes underlying biodiversity patterns in deep time. Cycadales are considered a relict of a once more diverse and globally distributed group but are restricted to low latitudes today. We still know little about their origin and geographic range evolution. Combining molecular data for extant species and leaf morphological data for extant and fossil species, we study the origin of cycad global biodiversity patterns through Bayesian totalevidence dating analyses. We assess the ancestral geographic origin and trace the historical biogeography of cycads with a time-stratified process-based model. Cycads originated in the Carboniferous on the Laurasian landmass and expanded in Gondwana in the Jurassic. Through now-vanished continental connections, Antarctica and Greenland were crucial biogeographic crossroads for cycad biogeography. Vicariance is an essential speciation mode in the deep and recent past. Their latitudinal span increased in the Jurassic and restrained toward subtropical latitudes in the Neogene in line with biogeographic inferences of high-latitude extirpations. We show the benefits of integrating fossils into phylogenies to estimate ancestral areas of origin and to study evolutionary processes explaining the global distribution of present-day relict groups. Article in Journal/Newspaper Antarc* Antarctica Greenland Université de Montpellier: HAL Greenland New Phytologist