Global flyway evolution in red knots Calidris canutus and genetic evidence for a Nearctic refugium
International audience Present-day ecology and population structure are the legacies of past climate and habitat perturbations, and this is particularly true for species that are widely distributed at high latitudes. The red knot, Calidris canutus, is an arctic-breeding, long-distance migratory shor...
Published in: | Molecular Ecology |
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Main Authors: | , , , , , , , , , |
Other Authors: | , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
HAL CCSD
2022
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Subjects: | |
Online Access: | https://hal.science/hal-03408091 https://hal.science/hal-03408091v2/document https://hal.science/hal-03408091v2/file/Molecular%20Ecology%20-%202022%20-%20Conklin%20-%20Global%20flyway%20evolution%20in%20red%20knots%20Calidris%20canutus%20and%20genetic%20evidence%20for%20a.pdf https://doi.org/10.1111/mec.16379 |
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ftunimontpellier:oai:HAL:hal-03408091v2 |
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openpolar |
institution |
Open Polar |
collection |
Université de Montpellier: HAL |
op_collection_id |
ftunimontpellier |
language |
English |
topic |
Bird migration Climate change Genetic differentiation Genotyping-by-sequencing Glacial refugia Phylogeography Population genomics [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] [SDV.BA.ZV]Life Sciences [q-bio]/Animal biology/Vertebrate Zoology [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE] |
spellingShingle |
Bird migration Climate change Genetic differentiation Genotyping-by-sequencing Glacial refugia Phylogeography Population genomics [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] [SDV.BA.ZV]Life Sciences [q-bio]/Animal biology/Vertebrate Zoology [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE] Conklin, Jesse, R Verkuil, Yvonne, I Battley, Philip Hassell, Chris, J Horn, Job Ten Johnson, James, A Tomkovich, Pavel, S Baker, Allan, J Piersma, Theunis Fontaine, Michael C. Global flyway evolution in red knots Calidris canutus and genetic evidence for a Nearctic refugium |
topic_facet |
Bird migration Climate change Genetic differentiation Genotyping-by-sequencing Glacial refugia Phylogeography Population genomics [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] [SDV.BA.ZV]Life Sciences [q-bio]/Animal biology/Vertebrate Zoology [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE] |
description |
International audience Present-day ecology and population structure are the legacies of past climate and habitat perturbations, and this is particularly true for species that are widely distributed at high latitudes. The red knot, Calidris canutus, is an arctic-breeding, long-distance migratory shorebird with six recognized subspecies defined by differences in morphology, migration behavior, and annual cycle phenology, in a global distribution thought to have arisen just since the last glacial maximum (LGM). We used nextRAD sequencing of 10,881 single-nucleotide polymorphisms (SNPs) to assess the neutral genetic structure and phylogeographic history of 172 red knots representing all known global breeding populations. Using population genetics approaches, including model-based scenario-testing in an approximate Bayesian computation (ABC) framework, we infer that red knots derive from two main lineages that diverged ca. 34,000 years ago, and thus most probably persisted at the LGM in both Palearctic and Nearctic refugia, followed by at least two instances of secondary contact and admixture. Within two Beringian subspecies (C. c. roselaari and rogersi), we detected previously unknown genetic structure among sub-populations sharing a migratory flyway, reflecting additional complexity in the phylogeographic history of the region. Conversely, we found very weak genetic differentiation between two Nearctic populations (rufa and islandica) with clearly divergent migratory phenotypes and little or no apparent contact throughout the annual cycle. Together, these results suggest that relative gene flow among migratory populations reflects a complex interplay of historical, geographical, and ecological factors. |
author2 |
Groningen Institute for Evolutionary Life Sciences Groningen (GELIFES) University of Groningen Groningen Massey University Diversity, ecology, evolution & Adaptation of arthropod vectors (MIVEGEC-DEEVA) Evolution des Systèmes Vectoriels (ESV) Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle (MIVEGEC) Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD France-Sud )-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD France-Sud )-Université de Montpellier (UM)-Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle (MIVEGEC) Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD France-Sud )-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD France-Sud )-Université de Montpellier (UM) |
format |
Article in Journal/Newspaper |
author |
Conklin, Jesse, R Verkuil, Yvonne, I Battley, Philip Hassell, Chris, J Horn, Job Ten Johnson, James, A Tomkovich, Pavel, S Baker, Allan, J Piersma, Theunis Fontaine, Michael C. |
author_facet |
Conklin, Jesse, R Verkuil, Yvonne, I Battley, Philip Hassell, Chris, J Horn, Job Ten Johnson, James, A Tomkovich, Pavel, S Baker, Allan, J Piersma, Theunis Fontaine, Michael C. |
author_sort |
Conklin, Jesse, R |
title |
Global flyway evolution in red knots Calidris canutus and genetic evidence for a Nearctic refugium |
title_short |
Global flyway evolution in red knots Calidris canutus and genetic evidence for a Nearctic refugium |
title_full |
Global flyway evolution in red knots Calidris canutus and genetic evidence for a Nearctic refugium |
title_fullStr |
Global flyway evolution in red knots Calidris canutus and genetic evidence for a Nearctic refugium |
title_full_unstemmed |
Global flyway evolution in red knots Calidris canutus and genetic evidence for a Nearctic refugium |
title_sort |
global flyway evolution in red knots calidris canutus and genetic evidence for a nearctic refugium |
publisher |
HAL CCSD |
publishDate |
2022 |
url |
https://hal.science/hal-03408091 https://hal.science/hal-03408091v2/document https://hal.science/hal-03408091v2/file/Molecular%20Ecology%20-%202022%20-%20Conklin%20-%20Global%20flyway%20evolution%20in%20red%20knots%20Calidris%20canutus%20and%20genetic%20evidence%20for%20a.pdf https://doi.org/10.1111/mec.16379 |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic Calidris canutus Climate change Red Knot |
genre_facet |
Arctic Calidris canutus Climate change Red Knot |
op_source |
ISSN: 0962-1083 EISSN: 1365-294X Molecular Ecology https://hal.science/hal-03408091 Molecular Ecology, 2022, 31 (7), pp.2124-2139. ⟨10.1111/mec.16379⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1111/mec.16379 hal-03408091 https://hal.science/hal-03408091 https://hal.science/hal-03408091v2/document https://hal.science/hal-03408091v2/file/Molecular%20Ecology%20-%202022%20-%20Conklin%20-%20Global%20flyway%20evolution%20in%20red%20knots%20Calidris%20canutus%20and%20genetic%20evidence%20for%20a.pdf doi:10.1111/mec.16379 |
op_rights |
http://creativecommons.org/licenses/by/ info:eu-repo/semantics/OpenAccess |
op_doi |
https://doi.org/10.1111/mec.16379 |
container_title |
Molecular Ecology |
container_volume |
31 |
container_issue |
7 |
container_start_page |
2124 |
op_container_end_page |
2139 |
_version_ |
1790597368015486976 |
spelling |
ftunimontpellier:oai:HAL:hal-03408091v2 2024-02-11T10:01:34+01:00 Global flyway evolution in red knots Calidris canutus and genetic evidence for a Nearctic refugium Conklin, Jesse, R Verkuil, Yvonne, I Battley, Philip Hassell, Chris, J Horn, Job Ten Johnson, James, A Tomkovich, Pavel, S Baker, Allan, J Piersma, Theunis Fontaine, Michael C. Groningen Institute for Evolutionary Life Sciences Groningen (GELIFES) University of Groningen Groningen Massey University Diversity, ecology, evolution & Adaptation of arthropod vectors (MIVEGEC-DEEVA) Evolution des Systèmes Vectoriels (ESV) Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle (MIVEGEC) Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD France-Sud )-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD France-Sud )-Université de Montpellier (UM)-Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle (MIVEGEC) Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD France-Sud )-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD France-Sud )-Université de Montpellier (UM) 2022-04-01 https://hal.science/hal-03408091 https://hal.science/hal-03408091v2/document https://hal.science/hal-03408091v2/file/Molecular%20Ecology%20-%202022%20-%20Conklin%20-%20Global%20flyway%20evolution%20in%20red%20knots%20Calidris%20canutus%20and%20genetic%20evidence%20for%20a.pdf https://doi.org/10.1111/mec.16379 en eng HAL CCSD Wiley info:eu-repo/semantics/altIdentifier/doi/10.1111/mec.16379 hal-03408091 https://hal.science/hal-03408091 https://hal.science/hal-03408091v2/document https://hal.science/hal-03408091v2/file/Molecular%20Ecology%20-%202022%20-%20Conklin%20-%20Global%20flyway%20evolution%20in%20red%20knots%20Calidris%20canutus%20and%20genetic%20evidence%20for%20a.pdf doi:10.1111/mec.16379 http://creativecommons.org/licenses/by/ info:eu-repo/semantics/OpenAccess ISSN: 0962-1083 EISSN: 1365-294X Molecular Ecology https://hal.science/hal-03408091 Molecular Ecology, 2022, 31 (7), pp.2124-2139. ⟨10.1111/mec.16379⟩ Bird migration Climate change Genetic differentiation Genotyping-by-sequencing Glacial refugia Phylogeography Population genomics [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] [SDV.BA.ZV]Life Sciences [q-bio]/Animal biology/Vertebrate Zoology [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics [SDV.GEN.GPO]Life Sciences [q-bio]/Genetics/Populations and Evolution [q-bio.PE] info:eu-repo/semantics/article Journal articles 2022 ftunimontpellier https://doi.org/10.1111/mec.16379 2024-01-23T23:37:09Z International audience Present-day ecology and population structure are the legacies of past climate and habitat perturbations, and this is particularly true for species that are widely distributed at high latitudes. The red knot, Calidris canutus, is an arctic-breeding, long-distance migratory shorebird with six recognized subspecies defined by differences in morphology, migration behavior, and annual cycle phenology, in a global distribution thought to have arisen just since the last glacial maximum (LGM). We used nextRAD sequencing of 10,881 single-nucleotide polymorphisms (SNPs) to assess the neutral genetic structure and phylogeographic history of 172 red knots representing all known global breeding populations. Using population genetics approaches, including model-based scenario-testing in an approximate Bayesian computation (ABC) framework, we infer that red knots derive from two main lineages that diverged ca. 34,000 years ago, and thus most probably persisted at the LGM in both Palearctic and Nearctic refugia, followed by at least two instances of secondary contact and admixture. Within two Beringian subspecies (C. c. roselaari and rogersi), we detected previously unknown genetic structure among sub-populations sharing a migratory flyway, reflecting additional complexity in the phylogeographic history of the region. Conversely, we found very weak genetic differentiation between two Nearctic populations (rufa and islandica) with clearly divergent migratory phenotypes and little or no apparent contact throughout the annual cycle. Together, these results suggest that relative gene flow among migratory populations reflects a complex interplay of historical, geographical, and ecological factors. Article in Journal/Newspaper Arctic Calidris canutus Climate change Red Knot Université de Montpellier: HAL Arctic Molecular Ecology 31 7 2124 2139 |