Fin whale ( Balaenoptera physalus ) mitogenomics:A cautionary tale of defining sub-species from mitochondrial sequence monophyly
The advent of massive parallel sequencing technologies has resulted in an increase of studies based upon complete mitochondrial genome DNA sequences that revisit the taxonomic status within and among species. Spatially distinct monophyly in such mitogenomic genealogies, i.e., the sharing of a recent...
Published in: | Molecular Phylogenetics and Evolution |
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Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
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2019
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Subjects: | |
Online Access: | https://hdl.handle.net/11370/b0b0eb34-fa00-4dfe-baea-0694fb7143be https://research.rug.nl/en/publications/b0b0eb34-fa00-4dfe-baea-0694fb7143be https://doi.org/10.1016/j.ympev.2019.02.003 https://pure.rug.nl/ws/files/95167786/1_s2.0_S1055790318306845_main_2_.pdf |
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ftunigroningenpu:oai:pure.rug.nl:publications/b0b0eb34-fa00-4dfe-baea-0694fb7143be |
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record_format |
openpolar |
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Open Polar |
collection |
University of Groningen research database |
op_collection_id |
ftunigroningenpu |
language |
English |
topic |
MAXIMUM-LIKELIHOOD-ESTIMATION MICROSATELLITE LOCI HUMPBACK WHALE NORTH-ATLANTIC SPECIES DELIMITATION MEDITERRANEAN SEA POPULATION SIZES MIGRATION RATES GENE TREES DNA |
spellingShingle |
MAXIMUM-LIKELIHOOD-ESTIMATION MICROSATELLITE LOCI HUMPBACK WHALE NORTH-ATLANTIC SPECIES DELIMITATION MEDITERRANEAN SEA POPULATION SIZES MIGRATION RATES GENE TREES DNA Cabrera, Andrea A Hoekendijk, Jeroen P A Aguilar, Alex Barco, Susan G Berrow, Simon Bloch, Dorete Borrell, Asunción Cunha, Haydée A Dalla Rosa, Luciano Dias, Carolina P Gauffier, Pauline Hao, Wensi Landry, Scott Larsen, Finn Martín, Vidal Mizroch, Sally Oosting, Tom Øien, Nils Pampoulie, Christophe Panigada, Simone Prieto, Rui Ramp, Christian Rivera-Léon, Vania E Robbins, Jooke Ryan, Conor Schall, Elena Sears, Richard Silva, Mónica A Urbán, Jorge Wenzel, Frederick W Palsbøll, Per J Bérubé, Martine Fin whale ( Balaenoptera physalus ) mitogenomics:A cautionary tale of defining sub-species from mitochondrial sequence monophyly |
topic_facet |
MAXIMUM-LIKELIHOOD-ESTIMATION MICROSATELLITE LOCI HUMPBACK WHALE NORTH-ATLANTIC SPECIES DELIMITATION MEDITERRANEAN SEA POPULATION SIZES MIGRATION RATES GENE TREES DNA |
description |
The advent of massive parallel sequencing technologies has resulted in an increase of studies based upon complete mitochondrial genome DNA sequences that revisit the taxonomic status within and among species. Spatially distinct monophyly in such mitogenomic genealogies, i.e., the sharing of a recent common ancestor among con-specific samples collected in the same region has been viewed as evidence for subspecies. Several recent studies in cetaceans have employed this criterion to suggest subsequent intraspecific taxonomic revisions. We reason that employing intra-specific, spatially distinct monophyly at non-recombining, clonally inherited genomes is an unsatisfactory criterion for defining subspecies based upon theoretical (genetic drift) and practical (sampling effort) arguments. This point was illustrated by a re-analysis of a global mitogenomic assessment of fin whales, Balaenoptera physalus spp., published by Archer et al. (2013), which proposed to further subdivide the Northern Hemisphere fin whale subspecies, B. p. physalus. The proposed revision was based upon the detection of spatially distinct monophyly among North Atlantic and North Pacific fin whales in a genealogy based upon complete mitochondrial genome DNA sequences. The extended analysis conducted in this study (1,676 mitochondrial control region, 162 complete mitochondrial genome DNA sequences and 20 microsatellite loci genotyped in 358 samples) revealed that the apparent monophyly among North Atlantic fin whales reported by Archer et al. (2013) to be due to low sample sizes. In conclusion, defining sub-species from monophyly (i.e., the absence of para- or polyphyly) can lead to erroneous conclusions due to relatively "trivial" aspects, such as sampling. Basic population genetic processes (i.e., genetic drift and migration) also affect the time to the most recent common ancestor and hence the probability that individuals in a sample are monophyletic. |
format |
Article in Journal/Newspaper |
author |
Cabrera, Andrea A Hoekendijk, Jeroen P A Aguilar, Alex Barco, Susan G Berrow, Simon Bloch, Dorete Borrell, Asunción Cunha, Haydée A Dalla Rosa, Luciano Dias, Carolina P Gauffier, Pauline Hao, Wensi Landry, Scott Larsen, Finn Martín, Vidal Mizroch, Sally Oosting, Tom Øien, Nils Pampoulie, Christophe Panigada, Simone Prieto, Rui Ramp, Christian Rivera-Léon, Vania E Robbins, Jooke Ryan, Conor Schall, Elena Sears, Richard Silva, Mónica A Urbán, Jorge Wenzel, Frederick W Palsbøll, Per J Bérubé, Martine |
author_facet |
Cabrera, Andrea A Hoekendijk, Jeroen P A Aguilar, Alex Barco, Susan G Berrow, Simon Bloch, Dorete Borrell, Asunción Cunha, Haydée A Dalla Rosa, Luciano Dias, Carolina P Gauffier, Pauline Hao, Wensi Landry, Scott Larsen, Finn Martín, Vidal Mizroch, Sally Oosting, Tom Øien, Nils Pampoulie, Christophe Panigada, Simone Prieto, Rui Ramp, Christian Rivera-Léon, Vania E Robbins, Jooke Ryan, Conor Schall, Elena Sears, Richard Silva, Mónica A Urbán, Jorge Wenzel, Frederick W Palsbøll, Per J Bérubé, Martine |
author_sort |
Cabrera, Andrea A |
title |
Fin whale ( Balaenoptera physalus ) mitogenomics:A cautionary tale of defining sub-species from mitochondrial sequence monophyly |
title_short |
Fin whale ( Balaenoptera physalus ) mitogenomics:A cautionary tale of defining sub-species from mitochondrial sequence monophyly |
title_full |
Fin whale ( Balaenoptera physalus ) mitogenomics:A cautionary tale of defining sub-species from mitochondrial sequence monophyly |
title_fullStr |
Fin whale ( Balaenoptera physalus ) mitogenomics:A cautionary tale of defining sub-species from mitochondrial sequence monophyly |
title_full_unstemmed |
Fin whale ( Balaenoptera physalus ) mitogenomics:A cautionary tale of defining sub-species from mitochondrial sequence monophyly |
title_sort |
fin whale ( balaenoptera physalus ) mitogenomics:a cautionary tale of defining sub-species from mitochondrial sequence monophyly |
publishDate |
2019 |
url |
https://hdl.handle.net/11370/b0b0eb34-fa00-4dfe-baea-0694fb7143be https://research.rug.nl/en/publications/b0b0eb34-fa00-4dfe-baea-0694fb7143be https://doi.org/10.1016/j.ympev.2019.02.003 https://pure.rug.nl/ws/files/95167786/1_s2.0_S1055790318306845_main_2_.pdf |
long_lat |
ENVELOPE(162.867,162.867,-76.850,-76.850) |
geographic |
Pacific Archer |
geographic_facet |
Pacific Archer |
genre |
Balaenoptera physalus Fin whale Humpback Whale North Atlantic |
genre_facet |
Balaenoptera physalus Fin whale Humpback Whale North Atlantic |
op_source |
Cabrera , A A , Hoekendijk , J P A , Aguilar , A , Barco , S G , Berrow , S , Bloch , D , Borrell , A , Cunha , H A , Dalla Rosa , L , Dias , C P , Gauffier , P , Hao , W , Landry , S , Larsen , F , Martín , V , Mizroch , S , Oosting , T , Øien , N , Pampoulie , C , Panigada , S , Prieto , R , Ramp , C , Rivera-Léon , V E , Robbins , J , Ryan , C , Schall , E , Sears , R , Silva , M A , Urbán , J , Wenzel , F W , Palsbøll , P J & Bérubé , M 2019 , ' Fin whale ( Balaenoptera physalus ) mitogenomics : A cautionary tale of defining sub-species from mitochondrial sequence monophyly ' , Molecular Phylogenetics and Evolution , vol. 135 , pp. 86-97 . https://doi.org/10.1016/j.ympev.2019.02.003 |
op_relation |
https://research.rug.nl/en/publications/b0b0eb34-fa00-4dfe-baea-0694fb7143be |
op_rights |
info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1016/j.ympev.2019.02.003 |
container_title |
Molecular Phylogenetics and Evolution |
container_volume |
135 |
container_start_page |
86 |
op_container_end_page |
97 |
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1809900530205458432 |
spelling |
ftunigroningenpu:oai:pure.rug.nl:publications/b0b0eb34-fa00-4dfe-baea-0694fb7143be 2024-09-09T19:31:41+00:00 Fin whale ( Balaenoptera physalus ) mitogenomics:A cautionary tale of defining sub-species from mitochondrial sequence monophyly Cabrera, Andrea A Hoekendijk, Jeroen P A Aguilar, Alex Barco, Susan G Berrow, Simon Bloch, Dorete Borrell, Asunción Cunha, Haydée A Dalla Rosa, Luciano Dias, Carolina P Gauffier, Pauline Hao, Wensi Landry, Scott Larsen, Finn Martín, Vidal Mizroch, Sally Oosting, Tom Øien, Nils Pampoulie, Christophe Panigada, Simone Prieto, Rui Ramp, Christian Rivera-Léon, Vania E Robbins, Jooke Ryan, Conor Schall, Elena Sears, Richard Silva, Mónica A Urbán, Jorge Wenzel, Frederick W Palsbøll, Per J Bérubé, Martine 2019-06 application/pdf https://hdl.handle.net/11370/b0b0eb34-fa00-4dfe-baea-0694fb7143be https://research.rug.nl/en/publications/b0b0eb34-fa00-4dfe-baea-0694fb7143be https://doi.org/10.1016/j.ympev.2019.02.003 https://pure.rug.nl/ws/files/95167786/1_s2.0_S1055790318306845_main_2_.pdf eng eng https://research.rug.nl/en/publications/b0b0eb34-fa00-4dfe-baea-0694fb7143be info:eu-repo/semantics/openAccess Cabrera , A A , Hoekendijk , J P A , Aguilar , A , Barco , S G , Berrow , S , Bloch , D , Borrell , A , Cunha , H A , Dalla Rosa , L , Dias , C P , Gauffier , P , Hao , W , Landry , S , Larsen , F , Martín , V , Mizroch , S , Oosting , T , Øien , N , Pampoulie , C , Panigada , S , Prieto , R , Ramp , C , Rivera-Léon , V E , Robbins , J , Ryan , C , Schall , E , Sears , R , Silva , M A , Urbán , J , Wenzel , F W , Palsbøll , P J & Bérubé , M 2019 , ' Fin whale ( Balaenoptera physalus ) mitogenomics : A cautionary tale of defining sub-species from mitochondrial sequence monophyly ' , Molecular Phylogenetics and Evolution , vol. 135 , pp. 86-97 . https://doi.org/10.1016/j.ympev.2019.02.003 MAXIMUM-LIKELIHOOD-ESTIMATION MICROSATELLITE LOCI HUMPBACK WHALE NORTH-ATLANTIC SPECIES DELIMITATION MEDITERRANEAN SEA POPULATION SIZES MIGRATION RATES GENE TREES DNA article 2019 ftunigroningenpu https://doi.org/10.1016/j.ympev.2019.02.003 2024-06-17T16:16:21Z The advent of massive parallel sequencing technologies has resulted in an increase of studies based upon complete mitochondrial genome DNA sequences that revisit the taxonomic status within and among species. Spatially distinct monophyly in such mitogenomic genealogies, i.e., the sharing of a recent common ancestor among con-specific samples collected in the same region has been viewed as evidence for subspecies. Several recent studies in cetaceans have employed this criterion to suggest subsequent intraspecific taxonomic revisions. We reason that employing intra-specific, spatially distinct monophyly at non-recombining, clonally inherited genomes is an unsatisfactory criterion for defining subspecies based upon theoretical (genetic drift) and practical (sampling effort) arguments. This point was illustrated by a re-analysis of a global mitogenomic assessment of fin whales, Balaenoptera physalus spp., published by Archer et al. (2013), which proposed to further subdivide the Northern Hemisphere fin whale subspecies, B. p. physalus. The proposed revision was based upon the detection of spatially distinct monophyly among North Atlantic and North Pacific fin whales in a genealogy based upon complete mitochondrial genome DNA sequences. The extended analysis conducted in this study (1,676 mitochondrial control region, 162 complete mitochondrial genome DNA sequences and 20 microsatellite loci genotyped in 358 samples) revealed that the apparent monophyly among North Atlantic fin whales reported by Archer et al. (2013) to be due to low sample sizes. In conclusion, defining sub-species from monophyly (i.e., the absence of para- or polyphyly) can lead to erroneous conclusions due to relatively "trivial" aspects, such as sampling. Basic population genetic processes (i.e., genetic drift and migration) also affect the time to the most recent common ancestor and hence the probability that individuals in a sample are monophyletic. Article in Journal/Newspaper Balaenoptera physalus Fin whale Humpback Whale North Atlantic University of Groningen research database Pacific Archer ENVELOPE(162.867,162.867,-76.850,-76.850) Molecular Phylogenetics and Evolution 135 86 97 |