Dispersal limitation structures fungal community assembly in a long‐term glacial chronosequence
Peer Reviewed http://deepblue.lib.umich.edu/bitstream/2027.42/107360/1/emi12281.pdf
| Published in: | Environmental Microbiology |
|---|---|
| Main Authors: | , |
| Format: | Article in Journal/Newspaper |
| Language: | unknown |
| Published: |
W.P. Van Stockum & Zoon
2014
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| Subjects: | |
| Online Access: | https://hdl.handle.net/2027.42/107360 https://doi.org/10.1111/1462-2920.12281 |
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ftumdeepblue:oai:deepblue.lib.umich.edu:2027.42/107360 |
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Open Polar |
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University of Michigan: Deep Blue |
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ftumdeepblue |
| language |
unknown |
| topic |
Microbiology and Immunology Science |
| spellingShingle |
Microbiology and Immunology Science Cline, Lauren C. Zak, Donald R. Dispersal limitation structures fungal community assembly in a long‐term glacial chronosequence |
| topic_facet |
Microbiology and Immunology Science |
| description |
Peer Reviewed http://deepblue.lib.umich.edu/bitstream/2027.42/107360/1/emi12281.pdf |
| format |
Article in Journal/Newspaper |
| author |
Cline, Lauren C. Zak, Donald R. |
| author_facet |
Cline, Lauren C. Zak, Donald R. |
| author_sort |
Cline, Lauren C. |
| title |
Dispersal limitation structures fungal community assembly in a long‐term glacial chronosequence |
| title_short |
Dispersal limitation structures fungal community assembly in a long‐term glacial chronosequence |
| title_full |
Dispersal limitation structures fungal community assembly in a long‐term glacial chronosequence |
| title_fullStr |
Dispersal limitation structures fungal community assembly in a long‐term glacial chronosequence |
| title_full_unstemmed |
Dispersal limitation structures fungal community assembly in a long‐term glacial chronosequence |
| title_sort |
dispersal limitation structures fungal community assembly in a long‐term glacial chronosequence |
| publisher |
W.P. Van Stockum & Zoon |
| publishDate |
2014 |
| url |
https://hdl.handle.net/2027.42/107360 https://doi.org/10.1111/1462-2920.12281 |
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Arctic |
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Arctic |
| op_relation |
Cline, Lauren C.; Zak, Donald R. (2014). "Dispersal limitation structures fungal community assembly in a long‐term glacial chronosequence." Environmental Microbiology (6): 1538-1548. 1462-2912 1462-2920 https://hdl.handle.net/2027.42/107360 doi:10.1111/1462-2920.12281 Environmental Microbiology Schloss, P.D., Westcott, S.L., Ryabin, T., Hall, J.R., Hartmann, M., Hollister, E.B., et al. ( 2009 ) Introducing mothur: open‐source, platform‐independent, community‐supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537 – 7541. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. ( 2011 ) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731 – 2739. Taylor, J.W., and Berbee, M.L. ( 2006 ) Dating divergences in the Fungal Tree of Life: review and new analyses. Mycologia 98: 838 – 849. Tedersoo, L., Bahram, M., Toots, M., Diédhiou, A.G., Henkel, T.W., Kjøller, R., et al. ( 2012 ) Towards global patterns in the diversity and community structure of ectomycorrhizal fungi. Mol Ecol 21: 4160 – 4170. Tilman, D. ( 1980 ) Resources: a graphical‐mechanistic approach to competition and predation. Am Nat 116: 362 – 393. Timling, I., and Taylor, D.L. ( 2012 ) Peeking through a frosty window: molecular insights into the ecology of Arctic soil fungi. Fung Ecol 5: 419 – 429. Treseder, K.K., Kivlin, S.N., and Hawkes, C.V. ( 2011 ) Evolutionary trade‐offs among decomposers determine responses to nitrogen enrichment. Ecol Lett 14: 933 – 938. Van der Heijden, M.G.A., Bardgett, R.D., and Van Straalen, N.M. ( 2008 ) The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecol Lett 11: 296 – 310. Vellend, M. ( 2010 ) Conceptual synthesis of community ecology. Q Rev Biol 85: 183 – 206. Webb, C.O., Ackerly, D.D., and Kembel, S.W. ( 2008 ) Phylocom: software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics 24: 2098 – 2100. Webb, C.O., Ackerly, D.D., McPeek, M.A., and Donoghue, M.J. ( 2002 ) Phylogenies and community ecology. Annu Rev Ecol Syst 33: 475 – 505. Wilbur, H.M., and Alford, R.A. ( 1985 ) Priority effects in experimental pond communities: responses of hyla to bufo and rana. Ecology 66: 1106 – 1114. Wu, L., Liu, X., Schadt, C.W., and Zhou, J. ( 2006 ) Microarray‐based analysis of subnanogram quantities of microbial community DNAs by using whole‐community genome amplification. Appl Environ Microbiol 72: 4931 – 4941. Xie, J., He, Z., Liu, X., Liu, X., Van Nostrand, J.D., Deng, Y., et al. ( 2011 ) GeoChip‐based analysis of the functional gene diversity and metabolic potential of microbial communities in acid mine drainage. Appl Environ Microbiol 77: 991 – 999. Zak, D.R., Pregitzer, K.S., Burton, A.J., Edwards, I.P., and Kellner, H. ( 2011 ) Microbial responses to a changing environment: implications for the future functioning of terrestrial ecosystems. Fung Ecol 4: 386 – 395. Zhang, Y., Zhang, X., Liu, X., Xiao, Y., Qu, L., Wu, L., and Zhou, J. ( 2007 ) Microarray‐based analysis of changes in diversity of microbial genes involved in organic carbon decomposition following land use/cover changes. FEMS Microbiol Lett 266: 144 – 151. Altschup, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. ( 1990 ) Basic local alignment search tool. J Mol Biol 215: 403 – 410. Anderson, M.J., Crist, T.O., Chase, J.M., Vellend, M., Inouye, B.D., Freestone, A.L., et al. ( 2011 ) Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist. Ecol Lett 14: 19 – 28. Baas Becking, L.G.M. ( 1934 ) Geobiologie of Inleiding Tot De Milieukunde. The Hague, the Netherlands: W.P. Van Stockum & Zoon (in Dutch). Baldrian, P. ( 2006 ) Fungal laccases – occurrence and properties. FEMS Microbiol Rev 30: 215 – 242. Benjamini, Y., and Hochberg, Y. ( 1995 ) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B 57: 289 – 300. Bjorbækmo, M.F.M., Carlsen, T., Brysting, A., Vrålstad, T., Høiland, K., Ugland, K.I., et al. ( 2010 ) High diversity of root associated fungi in both alpine and arctic Dryas octopetala. BMC Plant Biol 10: 244. Boddy, L. ( 2000 ) Interspecific combative interactions between wood‐decaying basidiomycetes. FEMS Microbiol Ecol 31: 185 – 194. Bray, J.R., and Curtis, J.T. ( 1957 ) An ordination of upland forest communities of southern Wisconsin. Ecol Monogr 27: 325 – 349. Burton, A.J., Ramm, C.W., and Pregitzer, K.S. ( 1991 ) Use of multivariate methods in forest research site selection. Can J For Res 21: 1573 – 1580. De Boer, W., Folman, L.B., Summerbell, R.C., and Boddy, L. ( 2005 ) Living in a fungal world: impact of fungi on soil bacterial niche development. FEMS Microbiol Rev 29: 795 – 811. Dickie, I.A., Fukami, T., Wilkie, J.P., Allen, R.B., and Buchanan, P.K. ( 2012 ) Do assembly history effects attenuate from species to ecosystem properties? A field test with wood‐inhabiting fungi. Ecol Lett 15: 133 – 141. Edman, M., Kruys, N., and Jonsson, B.G. ( 2004 ) Local dispersal sources strongly affect colonization patterns of wood‐decaying fungi on spruce logs. Ecol Appl 14: 893 – 901. Edwards, I.P., and Zak, D.R. ( 2010 ) Phylogenetic similarity and structure of Agaricomycotina communities across a forested landscape. Mol Ecol 19: 1469 – 1482. Eisenlord, S.D., Zak, D.R., and Upchurch, R.A. ( 2012 ) Dispersal limitation and the assembly of soil Actinobacteria communities in a long‐term chronosequence. Ecol Evol 2: 538 – 549. Faith, D.P. ( 1992 ) Conservation evaluation and phylogenetic diversity. Biol Conserv 61: 1 – 10. Favet, J., Lapanje, A., Giongo, A., Kennedy, S., Aung, Y., Cattaneo, A., et al. ( 2012 ) Microbial hitchhikers on intercontinental dust: catching a lift in Chad. ISME J 7: 850 – 867. Feinstein, L.M., and Blackwood, C.B. ( 2012 ) Taxa‐area relationship and neutral dynamics influence the diversity of fungal communities on senesced tree leaves. Environ Microbiol 14: 1488 – 1499. Fine, P.V., and Kembel, S.W. ( 2011 ) Phylogenetic community structure and phylogenetic turnover across space and edaphic gradients in western Amazonian tree communities. Ecography 34: 552 – 565. Finlay, B.J. ( 2002 ) Global dispersal of free‐living microbial eukaryote species. Science 296: 1061 – 1063. Fukami, T., Bezemer, T.M., Mortimer, S.R., and Van der Putten, W.H. ( 2005 ) Species divergence and trait convergence in experimental plant community assembly. Ecol Lett 8: 1283 – 1290. Fukami, T., Dickie, I.A., Wilkie, J.P., Paulus, B.C., Park, D., Roberts, A., et al. ( 2010 ) Assembly history dictates ecosystem functioning: evidence from wood decomposer communities. Ecol Lett 13: 675 – 684. Geml, J., Timling, I., Robinson, C.H., Lennon, N., Nusbaum, H.C., Brochmann, C., et al. ( 2012 ) An arctic community of symbiotic fungi assembled by long‐distance dispersers: phylogenetic diversity of ectomycorrhizal basidiomycetes in Svalbard based on soil and sporocarp DNA. J Biogeogr 39: 74 – 88. Green, J.L., Holmes, A.J., Westoby, M., Oliver, I., Briscoe, D., Dangerfield, M., et al. ( 2004 ) Spatial scaling of microbial eukaryote diversity. Nature 432: 747 – 750. Hallenberg, N., and Kuffer, N. ( 2001 ) Long‐distance spore dispersal in wood‐inhabiting basidiomycetes. Nord J Bot 21: 431 – 436. Hanson, C.A., Fuhrman, J.A., Horner‐Devine, M.C., and Martiny, J.B.H. ( 2012 ) Beyond biogeographic patterns: processes shaping the microbial landscape. Nat Rev Microbiol 10: 497 – 506. Hättenschwiler, S., Fromin, N., and Barantal, S. ( 2011 ) Functional diversity of terrestrial microbial decomposers and their substrates. C R Biol 334: 393 – 402. Hazard, C., Gosling, P., van der Gast, C.J., Mitchell, D.T., Doohan, F.M., and Bending, G.D. ( 2013 ) The role of local environment and geographical distance in determining community composition of arbuscular mycorrhizal fungi at the landscape scale. ISME J 7: 498 – 508. He, Z., Gentry, T.J., Schadt, C.W., Wu, L., Liebich, J., Chong, S.C., et al. ( 2007 ) GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes. Environ Sci 1: 67 – 77. |
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ftumdeepblue:oai:deepblue.lib.umich.edu:2027.42/107360 2023-08-20T04:03:11+02:00 Dispersal limitation structures fungal community assembly in a long‐term glacial chronosequence Cline, Lauren C. Zak, Donald R. 2014-06 application/pdf https://hdl.handle.net/2027.42/107360 https://doi.org/10.1111/1462-2920.12281 unknown W.P. Van Stockum & Zoon Wiley Periodicals, Inc. Cline, Lauren C.; Zak, Donald R. (2014). "Dispersal limitation structures fungal community assembly in a long‐term glacial chronosequence." Environmental Microbiology (6): 1538-1548. 1462-2912 1462-2920 https://hdl.handle.net/2027.42/107360 doi:10.1111/1462-2920.12281 Environmental Microbiology Schloss, P.D., Westcott, S.L., Ryabin, T., Hall, J.R., Hartmann, M., Hollister, E.B., et al. ( 2009 ) Introducing mothur: open‐source, platform‐independent, community‐supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537 – 7541. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. ( 2011 ) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731 – 2739. Taylor, J.W., and Berbee, M.L. ( 2006 ) Dating divergences in the Fungal Tree of Life: review and new analyses. Mycologia 98: 838 – 849. Tedersoo, L., Bahram, M., Toots, M., Diédhiou, A.G., Henkel, T.W., Kjøller, R., et al. ( 2012 ) Towards global patterns in the diversity and community structure of ectomycorrhizal fungi. Mol Ecol 21: 4160 – 4170. Tilman, D. ( 1980 ) Resources: a graphical‐mechanistic approach to competition and predation. Am Nat 116: 362 – 393. Timling, I., and Taylor, D.L. ( 2012 ) Peeking through a frosty window: molecular insights into the ecology of Arctic soil fungi. Fung Ecol 5: 419 – 429. Treseder, K.K., Kivlin, S.N., and Hawkes, C.V. ( 2011 ) Evolutionary trade‐offs among decomposers determine responses to nitrogen enrichment. Ecol Lett 14: 933 – 938. Van der Heijden, M.G.A., Bardgett, R.D., and Van Straalen, N.M. ( 2008 ) The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems. Ecol Lett 11: 296 – 310. Vellend, M. ( 2010 ) Conceptual synthesis of community ecology. Q Rev Biol 85: 183 – 206. Webb, C.O., Ackerly, D.D., and Kembel, S.W. ( 2008 ) Phylocom: software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics 24: 2098 – 2100. Webb, C.O., Ackerly, D.D., McPeek, M.A., and Donoghue, M.J. ( 2002 ) Phylogenies and community ecology. Annu Rev Ecol Syst 33: 475 – 505. Wilbur, H.M., and Alford, R.A. ( 1985 ) Priority effects in experimental pond communities: responses of hyla to bufo and rana. Ecology 66: 1106 – 1114. Wu, L., Liu, X., Schadt, C.W., and Zhou, J. ( 2006 ) Microarray‐based analysis of subnanogram quantities of microbial community DNAs by using whole‐community genome amplification. Appl Environ Microbiol 72: 4931 – 4941. Xie, J., He, Z., Liu, X., Liu, X., Van Nostrand, J.D., Deng, Y., et al. ( 2011 ) GeoChip‐based analysis of the functional gene diversity and metabolic potential of microbial communities in acid mine drainage. Appl Environ Microbiol 77: 991 – 999. Zak, D.R., Pregitzer, K.S., Burton, A.J., Edwards, I.P., and Kellner, H. ( 2011 ) Microbial responses to a changing environment: implications for the future functioning of terrestrial ecosystems. Fung Ecol 4: 386 – 395. Zhang, Y., Zhang, X., Liu, X., Xiao, Y., Qu, L., Wu, L., and Zhou, J. ( 2007 ) Microarray‐based analysis of changes in diversity of microbial genes involved in organic carbon decomposition following land use/cover changes. FEMS Microbiol Lett 266: 144 – 151. Altschup, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. ( 1990 ) Basic local alignment search tool. J Mol Biol 215: 403 – 410. Anderson, M.J., Crist, T.O., Chase, J.M., Vellend, M., Inouye, B.D., Freestone, A.L., et al. ( 2011 ) Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist. Ecol Lett 14: 19 – 28. Baas Becking, L.G.M. ( 1934 ) Geobiologie of Inleiding Tot De Milieukunde. The Hague, the Netherlands: W.P. Van Stockum & Zoon (in Dutch). Baldrian, P. ( 2006 ) Fungal laccases – occurrence and properties. FEMS Microbiol Rev 30: 215 – 242. Benjamini, Y., and Hochberg, Y. ( 1995 ) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B 57: 289 – 300. Bjorbækmo, M.F.M., Carlsen, T., Brysting, A., Vrålstad, T., Høiland, K., Ugland, K.I., et al. ( 2010 ) High diversity of root associated fungi in both alpine and arctic Dryas octopetala. BMC Plant Biol 10: 244. Boddy, L. ( 2000 ) Interspecific combative interactions between wood‐decaying basidiomycetes. FEMS Microbiol Ecol 31: 185 – 194. Bray, J.R., and Curtis, J.T. ( 1957 ) An ordination of upland forest communities of southern Wisconsin. Ecol Monogr 27: 325 – 349. Burton, A.J., Ramm, C.W., and Pregitzer, K.S. ( 1991 ) Use of multivariate methods in forest research site selection. Can J For Res 21: 1573 – 1580. De Boer, W., Folman, L.B., Summerbell, R.C., and Boddy, L. ( 2005 ) Living in a fungal world: impact of fungi on soil bacterial niche development. FEMS Microbiol Rev 29: 795 – 811. Dickie, I.A., Fukami, T., Wilkie, J.P., Allen, R.B., and Buchanan, P.K. ( 2012 ) Do assembly history effects attenuate from species to ecosystem properties? A field test with wood‐inhabiting fungi. Ecol Lett 15: 133 – 141. Edman, M., Kruys, N., and Jonsson, B.G. ( 2004 ) Local dispersal sources strongly affect colonization patterns of wood‐decaying fungi on spruce logs. Ecol Appl 14: 893 – 901. Edwards, I.P., and Zak, D.R. ( 2010 ) Phylogenetic similarity and structure of Agaricomycotina communities across a forested landscape. Mol Ecol 19: 1469 – 1482. Eisenlord, S.D., Zak, D.R., and Upchurch, R.A. ( 2012 ) Dispersal limitation and the assembly of soil Actinobacteria communities in a long‐term chronosequence. Ecol Evol 2: 538 – 549. Faith, D.P. ( 1992 ) Conservation evaluation and phylogenetic diversity. Biol Conserv 61: 1 – 10. Favet, J., Lapanje, A., Giongo, A., Kennedy, S., Aung, Y., Cattaneo, A., et al. ( 2012 ) Microbial hitchhikers on intercontinental dust: catching a lift in Chad. ISME J 7: 850 – 867. Feinstein, L.M., and Blackwood, C.B. ( 2012 ) Taxa‐area relationship and neutral dynamics influence the diversity of fungal communities on senesced tree leaves. Environ Microbiol 14: 1488 – 1499. Fine, P.V., and Kembel, S.W. ( 2011 ) Phylogenetic community structure and phylogenetic turnover across space and edaphic gradients in western Amazonian tree communities. Ecography 34: 552 – 565. Finlay, B.J. ( 2002 ) Global dispersal of free‐living microbial eukaryote species. Science 296: 1061 – 1063. Fukami, T., Bezemer, T.M., Mortimer, S.R., and Van der Putten, W.H. ( 2005 ) Species divergence and trait convergence in experimental plant community assembly. Ecol Lett 8: 1283 – 1290. Fukami, T., Dickie, I.A., Wilkie, J.P., Paulus, B.C., Park, D., Roberts, A., et al. ( 2010 ) Assembly history dictates ecosystem functioning: evidence from wood decomposer communities. Ecol Lett 13: 675 – 684. Geml, J., Timling, I., Robinson, C.H., Lennon, N., Nusbaum, H.C., Brochmann, C., et al. ( 2012 ) An arctic community of symbiotic fungi assembled by long‐distance dispersers: phylogenetic diversity of ectomycorrhizal basidiomycetes in Svalbard based on soil and sporocarp DNA. J Biogeogr 39: 74 – 88. Green, J.L., Holmes, A.J., Westoby, M., Oliver, I., Briscoe, D., Dangerfield, M., et al. ( 2004 ) Spatial scaling of microbial eukaryote diversity. Nature 432: 747 – 750. Hallenberg, N., and Kuffer, N. ( 2001 ) Long‐distance spore dispersal in wood‐inhabiting basidiomycetes. Nord J Bot 21: 431 – 436. Hanson, C.A., Fuhrman, J.A., Horner‐Devine, M.C., and Martiny, J.B.H. ( 2012 ) Beyond biogeographic patterns: processes shaping the microbial landscape. Nat Rev Microbiol 10: 497 – 506. Hättenschwiler, S., Fromin, N., and Barantal, S. ( 2011 ) Functional diversity of terrestrial microbial decomposers and their substrates. C R Biol 334: 393 – 402. Hazard, C., Gosling, P., van der Gast, C.J., Mitchell, D.T., Doohan, F.M., and Bending, G.D. ( 2013 ) The role of local environment and geographical distance in determining community composition of arbuscular mycorrhizal fungi at the landscape scale. ISME J 7: 498 – 508. He, Z., Gentry, T.J., Schadt, C.W., Wu, L., Liebich, J., Chong, S.C., et al. ( 2007 ) GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes. Environ Sci 1: 67 – 77. IndexNoFollow Microbiology and Immunology Science Article 2014 ftumdeepblue https://doi.org/10.1111/1462-2920.12281 2023-07-31T20:47:28Z Peer Reviewed http://deepblue.lib.umich.edu/bitstream/2027.42/107360/1/emi12281.pdf Article in Journal/Newspaper Arctic University of Michigan: Deep Blue Environmental Microbiology 16 6 1538 1548 |