Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep‐sea hydrocarbon plume

Peer Reviewed http://deepblue.lib.umich.edu/bitstream/2027.42/102241/1/emi12182.pdf

Bibliographic Details
Published in:Hydrological Processes
Main Authors: Li, Meng, Jain, Sunit, Baker, Brett J., Taylor, Chris, Dick, Gregory J.
Format: Article in Journal/Newspaper
Language:unknown
Published: Wiley Periodicals, Inc. 2014
Subjects:
Microbiology and Immunology
Science
Arctic
Online Access:https://hdl.handle.net/2027.42/102241
https://doi.org/10.1111/1462-2920.12182
id ftumdeepblue:oai:deepblue.lib.umich.edu:2027.42/102241
record_format openpolar
institution Open Polar
collection University of Michigan: Deep Blue
op_collection_id ftumdeepblue
language unknown
topic Microbiology and Immunology
Science
spellingShingle Microbiology and Immunology
Science
Li, Meng
Jain, Sunit
Baker, Brett J.
Taylor, Chris
Dick, Gregory J.
Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep‐sea hydrocarbon plume
topic_facet Microbiology and Immunology
Science
description Peer Reviewed http://deepblue.lib.umich.edu/bitstream/2027.42/102241/1/emi12182.pdf
format Article in Journal/Newspaper
author Li, Meng
Jain, Sunit
Baker, Brett J.
Taylor, Chris
Dick, Gregory J.
author_facet Li, Meng
Jain, Sunit
Baker, Brett J.
Taylor, Chris
Dick, Gregory J.
author_sort Li, Meng
title Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep‐sea hydrocarbon plume
title_short Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep‐sea hydrocarbon plume
title_full Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep‐sea hydrocarbon plume
title_fullStr Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep‐sea hydrocarbon plume
title_full_unstemmed Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep‐sea hydrocarbon plume
title_sort novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep‐sea hydrocarbon plume
publisher Wiley Periodicals, Inc.
publishDate 2014
url https://hdl.handle.net/2027.42/102241
https://doi.org/10.1111/1462-2920.12182
genre Arctic
genre_facet Arctic
op_relation Li, Meng; Jain, Sunit; Baker, Brett J.; Taylor, Chris; Dick, Gregory J. (2014). "Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep‐sea hydrocarbon plume." Environmental Microbiology (1): 60-71.
1462-2912
1462-2920
https://hdl.handle.net/2027.42/102241
doi:10.1111/1462-2920.12182
Environmental Microbiology
Sievers, F., Wilm, A., Dineen, D., Gibson, T.J., Karplus, K., Li, W., et al. ( 2011 ) Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol 7: 539.
Svenning, M.M., Hestnes, A.G., Wartiainen, I., Stein, L.Y., Klotz, M.G., Kalyuzhnaya, M.G., et al. ( 2011 ) Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96. J Bacteriol 193: 6418 – 6419.
Swan, B.K., Martinez‐Garcia, M., Preston, C.M., Sczyrba, A., Woyke, T., Lamy, D., et al. ( 2011 ) Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science 333: 1296 – 1300.
Tavormina, P.L., Ussler, W., 3rd., and Orphan, V.J. ( 2008 ) Planktonic and sediment‐associated aerobic methanotrophs in two seep systems along the North American margin. Appl Environ Microbiol 74: 3985 – 39895.
Tavormina, P.L., Ussler, W., 3rd., Joye, S.B., Harrison, B.K., and Orphan, V.J. ( 2010 ) Distributions of putative aerobic methanotrophs in diverse pelagic marine environments. ISME J 4: 700 – 710.
Tavormina, P.L., Orphan, V.J., Kalyuzhnaya, M.G., Jetten, M.S.M., and Klotz, M.G. ( 2011 ) A novel family of functional operons encoding methane/ammonia monooxygenase‐related proteins in gammaproteobacterial methanotrophs. Environ Microbiol Rep 3: 91 – 100.
Tavormina, P.L., Ussler, W., 3rd, Steele, J.A., Connon, S.A., Klotz, M.G., and Orphan, V.J. ( 2013 ) Abundance and distribution of diverse membrane‐bound monooxygenase (Cu‐MMO) genes within the Costa Rica oxygen minimum zone. Environ Microbiol Rep 3: 414 – 423. doi:10.1111/1758‐2229.12025.
Teske, A., Hinrichs, K.U., Edgcomb, V., de Vera Gomez, A., Kysela, D., Sylva, S.P., et al. ( 2002 ) Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methanotrophic communities. Appl Environ Microbiol 68: 1994 – 2007.
Tourna, M., Stieglmeier, M., Spang, A., Konneke, M., Schintlmeister, A., Urich, T., et al. ( 2011 ) Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc Natl Acad Sci USA 108: 8420 – 8425.
Valentine, D.L. ( 2010 ) Measure methane to quantify the oil spill. Nature 465: 421.
Valentine, D.L. ( 2011 ) Emerging topics in marine methane biogeochemistry. Ann Rev Mar Sci 3: 147 – 171.
Valentine, D.L., Kessler, J.D., Redmond, M.C., Mendes, S.D., Heintz, M.B., Farwell, C., et al. ( 2010 ) Propane respiration jump‐starts microbial response to a deep oil spill. Science 330: 208 – 211.
Vondamm, K.L., Edmond, J.M., Measures, C.I., and Grant, B. ( 1985 ) Chemistry of submarine hydrothermal solutions at Guaymas Basin, Gulf of California. Geochim Cosmochim Acta 49: 2221 – 2237.
Ward, N., Larsen, O., Sakwa, J., Bruseth, L., Khouri, H., Durkin, A.S., et al. ( 2004 ) Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath). PLoS Biol 2: e303.
Wasmund, K., Kurtboke, D.I., Burns, K.A., and Bourne, D.G. ( 2009 ) Microbial diversity in sediments associated with a shallow methane seep in the tropical Timor Sea of Australia reveals a novel aerobic methanotroph diversity. FEMS Microbiol Ecol 68: 142 – 151.
Welhan, J.A., and Lupton, J.E. ( 1987 ) Light hydrocarbon gases in Guaymas Basin hydrothermal fluids: thermogenic versus abiogenic orign. Am Assoc Pet Geol Bull 71: 215 – 223.
Yan, T., Ye, Q., Zhou, J., and Zhang, C.L. ( 2006 ) Diversity of functional genes for methanotrophs in sediments associated with gas hydrates and hydrocarbon seeps in the Gulf of Mexico. FEMS Microbiol Ecol 57: 251 – 259.
Zbinden, M., Shillito, B., Le Bris, N., De Villardi de Montlaur, C., Roussel, E., Guyot, F., et al. ( 2008 ) New insights on the metabolic diversity among the epibiotic microbial community of the hydrothermal shrimp Rimicaris exoculata. J Expe Mar Biol Ecol 359: 131 – 140.
Zerbino, D.R., and Birney, E. ( 2008 ) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821 – 829.
Abascal, F., Zardoya, R., and Posada, D. ( 2005 ) ProtTest: selection of best‐fit models of protein evolution. Bioinformatics 21: 2104 – 2105.
Arp, D.J., Chain, P.S.G., and Klotz, M.G. ( 2007 ) The impact of genome analyses on our understanding of ammonia‐oxidizing bacteria. Annu Rev Microbiol 61: 503 – 528.
Baani, M., and Liesack, W. ( 2008 ) Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2. Proc Natl Acad Sci USA 105: 10203 – 10208.
Baelum, J., Borglin, S., Chakraborty, R., Fortney, J.L., Lamendella, R., Mason, O.U., et al. ( 2012 ) Deep‐sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill. Environ Microbiol 14: 2405 – 2416.
Baker, B.J., Lesniewski, R.A., and Dick, G.J. ( 2012 ) Genome‐enabled transcriptomics reveals archaeal populations that drive nitrification in deep‐sea hydrothermal plume. ISME J 6: 2269 – 2279.
Baker, B.J., Sheik, C.S., Taylor, C.A., Jain, S., Bhasi, A., Cavalcoli, J.D., et al. ( 2013 ) Community transcriptomic assembly reveals microbes that contribute to deep‐sea carbon and nitrogen cycling. ISME J. doi:10.1038/ismej.2013.85. (in press).
Balasubramanian, R., Smith, S.M., Rawat, S., Yatsunyk, L.A., Stemmler, T.L., and Rosenzweig, A.C. ( 2010 ) Oxidation of methane by a biological dicopper centre. Nature 465: 115 – 119.
Beaulieu, S.E. ( 2010 ) InterRidge global database of active submarine hydrothermal vent fields: prepared for InterRidge, Version 2.0. World Wide Web electronic publication [WWW document]. URL http://www.interridge.org/IRvents.
van Beilen, J.B., and Funhoff, E.G. ( 2007 ) Alkane hydroxylases involved in microbial alkane degradation. Appl Microbiol Biotechnol 74: 13 – 21.
van Beilen, J.B., Li, Z., Duetz, W.A., Smits, T.H.M., and Witholt, B. ( 2003 ) Diversity of alkane hydroxylase systems in the environment. Oil Gas Sci Technol 58: 427 – 440.
Berger, S.A., Krompaß, D., and Stamatakis, A. ( 2011 ) Performance, accuracy and web‐server for evolutionary placement of short sequence reads under maximum‐likelihood. Syst Biol 60: 291 – 302.
Berube, P.M., and Stahl, D.A. ( 2012 ) The divergent AmoC3 subunit of ammonia monooxygenase functions as part of a stress response system in Nitrosomonas europaea. J Bacteriol 194: 3448 – 3456.
Biddle, J.F., Cardman, Z., Mendlovitz, H., Albert, D.B., Lloyd, K.G., Boetius, A., et al. ( 2011 ) Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments. ISME J 5: 1 – 14.
Boden, R., Cunliffe, M., Scanlan, J., Moussard, H., Kits, K.D., Klotz, M.G., et al. ( 2011 ) Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09. J Bacteriol 193: 7001 – 7002.
Campbell, K.A. ( 2006 ) Hydrocarbon seep and hydrothermal vent paleoenvironments and paleontology: past developments and future research directions. Palaeogeogr Palaeoclimatol Palaeoecol 232: 362 – 407.
Capella‐Gutierrez, S., Silla‐Martinez, J.M., and Gabaldon, T. ( 2009 ) TrimAl: a tool for automated alignment trimming in large‐scale phylogenetic analyses. Bioinformatics 25: 1972 – 1973.
Chen, Y., Crombie, A., Rahman, M.T., Dedysh, S.N., Liesack, W., Stott, M.B., et al. ( 2010 ) Complete genome sequence of the aerobic facultative methanotroph Methylocella silvestris BL2. J Bacteriol 192: 3840 – 3841.
Chevreux, B., Pfisterer, T., Drescher, B., Driesel, A.J., Muller, W.E.G., Wetter, T., et al. ( 2004 ) Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res 14: 1147 – 1159.
Chistoserdova, L. ( 2011 ) Modularity of methylotrophy, revisited. Environ Microbiol 13: 2603 – 2622.
Coleman, N.V., Yau, S., Wilson, N.L., Nolan, L.M., Migocki, M.D., Ly, M.A., et al. ( 2011 ) Untangling the multiple monooxygenases of Mycobacterium chubuense strain NBB4, a versatile hydrocarbon degrader. Environ Microbiol 3: 297 – 307.
Coleman, N.V., Le, N.B., Ly, M.A., Ogawa, H.E., McCarl, V., Wilson, N.L., et al. ( 2012 ) Hydrocarbon monooxygenase in Mycobacterium: recombinant expression of a member of the ammonia monooxygenase superfamily. ISME J 6: 171 – 182.
Costello, A.M., and Lidstrom, M.E. ( 1999 ) Molecular characterization of functional and phylogenetic genes from natural populations of methanotrophs in lake sediments. Appl Environ Microbiol 65: 5066 – 5074.
Crépeau, V., Cambon Bonavita, M.A., Lesongeur, F., Randrianalivelo, H., Sarradin, P.M., Sarrazin, J., et al. ( 2011 ) Diversity and function in microbial mats from the Lucky Strike hydrothermal vent field. FEMS Microbiol Ecol 76: 524 – 540.
DeSantis, T.Z., Hugenholtz, P., Jr, Keller, K., Brodie, E.L., Larsen, N., Piceno, Y.M., et al. ( 2006 ) NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. Nucleic Acids Res 34: W394 – W399.
Dick, G.J., and Tebo, B.M. ( 2010 ) Microbial diversity and biogeochemistry of the Guaymas Basin deep‐sea hydrothermal plume. Environ Microbiol 12: 1334 – 1347.
op_rights IndexNoFollow
op_doi https://doi.org/10.1111/1462-2920.1218210.1111/1758‐2229.1202510.1038/ismej.2013.8510.1029/2002GL01635810.1111/1462‐2920.1205110.1111/1462‐2920.12165
container_title Hydrological Processes
container_volume 34
container_issue 7
container_start_page 1665
op_container_end_page 1673
_version_ 1774713601558315008
spelling ftumdeepblue:oai:deepblue.lib.umich.edu:2027.42/102241 2023-08-20T04:03:12+02:00 Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep‐sea hydrocarbon plume Li, Meng Jain, Sunit Baker, Brett J. Taylor, Chris Dick, Gregory J. 2014-01 application/pdf https://hdl.handle.net/2027.42/102241 https://doi.org/10.1111/1462-2920.12182 unknown Wiley Periodicals, Inc. AGU Li, Meng; Jain, Sunit; Baker, Brett J.; Taylor, Chris; Dick, Gregory J. (2014). "Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep‐sea hydrocarbon plume." Environmental Microbiology (1): 60-71. 1462-2912 1462-2920 https://hdl.handle.net/2027.42/102241 doi:10.1111/1462-2920.12182 Environmental Microbiology Sievers, F., Wilm, A., Dineen, D., Gibson, T.J., Karplus, K., Li, W., et al. ( 2011 ) Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol 7: 539. Svenning, M.M., Hestnes, A.G., Wartiainen, I., Stein, L.Y., Klotz, M.G., Kalyuzhnaya, M.G., et al. ( 2011 ) Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96. J Bacteriol 193: 6418 – 6419. Swan, B.K., Martinez‐Garcia, M., Preston, C.M., Sczyrba, A., Woyke, T., Lamy, D., et al. ( 2011 ) Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean. Science 333: 1296 – 1300. Tavormina, P.L., Ussler, W., 3rd., and Orphan, V.J. ( 2008 ) Planktonic and sediment‐associated aerobic methanotrophs in two seep systems along the North American margin. Appl Environ Microbiol 74: 3985 – 39895. Tavormina, P.L., Ussler, W., 3rd., Joye, S.B., Harrison, B.K., and Orphan, V.J. ( 2010 ) Distributions of putative aerobic methanotrophs in diverse pelagic marine environments. ISME J 4: 700 – 710. Tavormina, P.L., Orphan, V.J., Kalyuzhnaya, M.G., Jetten, M.S.M., and Klotz, M.G. ( 2011 ) A novel family of functional operons encoding methane/ammonia monooxygenase‐related proteins in gammaproteobacterial methanotrophs. Environ Microbiol Rep 3: 91 – 100. Tavormina, P.L., Ussler, W., 3rd, Steele, J.A., Connon, S.A., Klotz, M.G., and Orphan, V.J. ( 2013 ) Abundance and distribution of diverse membrane‐bound monooxygenase (Cu‐MMO) genes within the Costa Rica oxygen minimum zone. Environ Microbiol Rep 3: 414 – 423. doi:10.1111/1758‐2229.12025. Teske, A., Hinrichs, K.U., Edgcomb, V., de Vera Gomez, A., Kysela, D., Sylva, S.P., et al. ( 2002 ) Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methanotrophic communities. Appl Environ Microbiol 68: 1994 – 2007. Tourna, M., Stieglmeier, M., Spang, A., Konneke, M., Schintlmeister, A., Urich, T., et al. ( 2011 ) Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc Natl Acad Sci USA 108: 8420 – 8425. Valentine, D.L. ( 2010 ) Measure methane to quantify the oil spill. Nature 465: 421. Valentine, D.L. ( 2011 ) Emerging topics in marine methane biogeochemistry. Ann Rev Mar Sci 3: 147 – 171. Valentine, D.L., Kessler, J.D., Redmond, M.C., Mendes, S.D., Heintz, M.B., Farwell, C., et al. ( 2010 ) Propane respiration jump‐starts microbial response to a deep oil spill. Science 330: 208 – 211. Vondamm, K.L., Edmond, J.M., Measures, C.I., and Grant, B. ( 1985 ) Chemistry of submarine hydrothermal solutions at Guaymas Basin, Gulf of California. Geochim Cosmochim Acta 49: 2221 – 2237. Ward, N., Larsen, O., Sakwa, J., Bruseth, L., Khouri, H., Durkin, A.S., et al. ( 2004 ) Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath). PLoS Biol 2: e303. Wasmund, K., Kurtboke, D.I., Burns, K.A., and Bourne, D.G. ( 2009 ) Microbial diversity in sediments associated with a shallow methane seep in the tropical Timor Sea of Australia reveals a novel aerobic methanotroph diversity. FEMS Microbiol Ecol 68: 142 – 151. Welhan, J.A., and Lupton, J.E. ( 1987 ) Light hydrocarbon gases in Guaymas Basin hydrothermal fluids: thermogenic versus abiogenic orign. Am Assoc Pet Geol Bull 71: 215 – 223. Yan, T., Ye, Q., Zhou, J., and Zhang, C.L. ( 2006 ) Diversity of functional genes for methanotrophs in sediments associated with gas hydrates and hydrocarbon seeps in the Gulf of Mexico. FEMS Microbiol Ecol 57: 251 – 259. Zbinden, M., Shillito, B., Le Bris, N., De Villardi de Montlaur, C., Roussel, E., Guyot, F., et al. ( 2008 ) New insights on the metabolic diversity among the epibiotic microbial community of the hydrothermal shrimp Rimicaris exoculata. J Expe Mar Biol Ecol 359: 131 – 140. Zerbino, D.R., and Birney, E. ( 2008 ) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821 – 829. Abascal, F., Zardoya, R., and Posada, D. ( 2005 ) ProtTest: selection of best‐fit models of protein evolution. Bioinformatics 21: 2104 – 2105. Arp, D.J., Chain, P.S.G., and Klotz, M.G. ( 2007 ) The impact of genome analyses on our understanding of ammonia‐oxidizing bacteria. Annu Rev Microbiol 61: 503 – 528. Baani, M., and Liesack, W. ( 2008 ) Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2. Proc Natl Acad Sci USA 105: 10203 – 10208. Baelum, J., Borglin, S., Chakraborty, R., Fortney, J.L., Lamendella, R., Mason, O.U., et al. ( 2012 ) Deep‐sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill. Environ Microbiol 14: 2405 – 2416. Baker, B.J., Lesniewski, R.A., and Dick, G.J. ( 2012 ) Genome‐enabled transcriptomics reveals archaeal populations that drive nitrification in deep‐sea hydrothermal plume. ISME J 6: 2269 – 2279. Baker, B.J., Sheik, C.S., Taylor, C.A., Jain, S., Bhasi, A., Cavalcoli, J.D., et al. ( 2013 ) Community transcriptomic assembly reveals microbes that contribute to deep‐sea carbon and nitrogen cycling. ISME J. doi:10.1038/ismej.2013.85. (in press). Balasubramanian, R., Smith, S.M., Rawat, S., Yatsunyk, L.A., Stemmler, T.L., and Rosenzweig, A.C. ( 2010 ) Oxidation of methane by a biological dicopper centre. Nature 465: 115 – 119. Beaulieu, S.E. ( 2010 ) InterRidge global database of active submarine hydrothermal vent fields: prepared for InterRidge, Version 2.0. World Wide Web electronic publication [WWW document]. URL http://www.interridge.org/IRvents. van Beilen, J.B., and Funhoff, E.G. ( 2007 ) Alkane hydroxylases involved in microbial alkane degradation. Appl Microbiol Biotechnol 74: 13 – 21. van Beilen, J.B., Li, Z., Duetz, W.A., Smits, T.H.M., and Witholt, B. ( 2003 ) Diversity of alkane hydroxylase systems in the environment. Oil Gas Sci Technol 58: 427 – 440. Berger, S.A., Krompaß, D., and Stamatakis, A. ( 2011 ) Performance, accuracy and web‐server for evolutionary placement of short sequence reads under maximum‐likelihood. Syst Biol 60: 291 – 302. Berube, P.M., and Stahl, D.A. ( 2012 ) The divergent AmoC3 subunit of ammonia monooxygenase functions as part of a stress response system in Nitrosomonas europaea. J Bacteriol 194: 3448 – 3456. Biddle, J.F., Cardman, Z., Mendlovitz, H., Albert, D.B., Lloyd, K.G., Boetius, A., et al. ( 2011 ) Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments. ISME J 5: 1 – 14. Boden, R., Cunliffe, M., Scanlan, J., Moussard, H., Kits, K.D., Klotz, M.G., et al. ( 2011 ) Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09. J Bacteriol 193: 7001 – 7002. Campbell, K.A. ( 2006 ) Hydrocarbon seep and hydrothermal vent paleoenvironments and paleontology: past developments and future research directions. Palaeogeogr Palaeoclimatol Palaeoecol 232: 362 – 407. Capella‐Gutierrez, S., Silla‐Martinez, J.M., and Gabaldon, T. ( 2009 ) TrimAl: a tool for automated alignment trimming in large‐scale phylogenetic analyses. Bioinformatics 25: 1972 – 1973. Chen, Y., Crombie, A., Rahman, M.T., Dedysh, S.N., Liesack, W., Stott, M.B., et al. ( 2010 ) Complete genome sequence of the aerobic facultative methanotroph Methylocella silvestris BL2. J Bacteriol 192: 3840 – 3841. Chevreux, B., Pfisterer, T., Drescher, B., Driesel, A.J., Muller, W.E.G., Wetter, T., et al. ( 2004 ) Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res 14: 1147 – 1159. Chistoserdova, L. ( 2011 ) Modularity of methylotrophy, revisited. Environ Microbiol 13: 2603 – 2622. Coleman, N.V., Yau, S., Wilson, N.L., Nolan, L.M., Migocki, M.D., Ly, M.A., et al. ( 2011 ) Untangling the multiple monooxygenases of Mycobacterium chubuense strain NBB4, a versatile hydrocarbon degrader. Environ Microbiol 3: 297 – 307. Coleman, N.V., Le, N.B., Ly, M.A., Ogawa, H.E., McCarl, V., Wilson, N.L., et al. ( 2012 ) Hydrocarbon monooxygenase in Mycobacterium: recombinant expression of a member of the ammonia monooxygenase superfamily. ISME J 6: 171 – 182. Costello, A.M., and Lidstrom, M.E. ( 1999 ) Molecular characterization of functional and phylogenetic genes from natural populations of methanotrophs in lake sediments. Appl Environ Microbiol 65: 5066 – 5074. Crépeau, V., Cambon Bonavita, M.A., Lesongeur, F., Randrianalivelo, H., Sarradin, P.M., Sarrazin, J., et al. ( 2011 ) Diversity and function in microbial mats from the Lucky Strike hydrothermal vent field. FEMS Microbiol Ecol 76: 524 – 540. DeSantis, T.Z., Hugenholtz, P., Jr, Keller, K., Brodie, E.L., Larsen, N., Piceno, Y.M., et al. ( 2006 ) NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. Nucleic Acids Res 34: W394 – W399. Dick, G.J., and Tebo, B.M. ( 2010 ) Microbial diversity and biogeochemistry of the Guaymas Basin deep‐sea hydrothermal plume. Environ Microbiol 12: 1334 – 1347. IndexNoFollow Microbiology and Immunology Science Article 2014 ftumdeepblue https://doi.org/10.1111/1462-2920.1218210.1111/1758‐2229.1202510.1038/ismej.2013.8510.1029/2002GL01635810.1111/1462‐2920.1205110.1111/1462‐2920.12165 2023-07-31T20:31:53Z Peer Reviewed http://deepblue.lib.umich.edu/bitstream/2027.42/102241/1/emi12182.pdf Article in Journal/Newspaper Arctic University of Michigan: Deep Blue Hydrological Processes 34 7 1665 1673

Similar Items