Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus
The copepod Calanus finmarchicus (Crustacea, Copepoda) is a key zooplanktonic species with a crucial position in the North Atlantic food web and significant contributor to ocean carbon flux. Like many other high latitude animals, it has evolved a programmed arrested development called diapause to co...
Published in: | Ecology and Evolution |
---|---|
Main Authors: | , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
2022
|
Subjects: | |
Online Access: | https://pure.uhi.ac.uk/en/publications/d3342ae3-ec7f-4135-9578-fae43b1e95e3 https://doi.org/10.1002/ece3.8605 https://pureadmin.uhi.ac.uk/ws/files/17635110/Ecology_and_Evolution_2022_Payton_Annual_transcriptome_of_a_key_zooplankton_species_the_copepod_Calanus_finmarchicus.pdf https://onlinelibrary.wiley.com/doi/10.1002/ece3.8605 |
id |
ftuhipublicatio:oai:pure.atira.dk:publications/d3342ae3-ec7f-4135-9578-fae43b1e95e3 |
---|---|
record_format |
openpolar |
spelling |
ftuhipublicatio:oai:pure.atira.dk:publications/d3342ae3-ec7f-4135-9578-fae43b1e95e3 2024-09-09T19:34:56+00:00 Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus Payton, Laura Noirot, Céline Last, Kim S. Grigor, Jordan Hüppe, Lukas Conway, David V. P. Dannemeyer, Mona Suin, Amandine Meyer, Bettina 2022-02-22 application/pdf https://pure.uhi.ac.uk/en/publications/d3342ae3-ec7f-4135-9578-fae43b1e95e3 https://doi.org/10.1002/ece3.8605 https://pureadmin.uhi.ac.uk/ws/files/17635110/Ecology_and_Evolution_2022_Payton_Annual_transcriptome_of_a_key_zooplankton_species_the_copepod_Calanus_finmarchicus.pdf https://onlinelibrary.wiley.com/doi/10.1002/ece3.8605 eng eng https://pure.uhi.ac.uk/en/publications/d3342ae3-ec7f-4135-9578-fae43b1e95e3 info:eu-repo/semantics/openAccess Payton , L , Noirot , C , Last , K S , Grigor , J , Hüppe , L , Conway , D V P , Dannemeyer , M , Suin , A & Meyer , B 2022 , ' Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus ' , Ecology and Evolution , vol. 12 , no. 2 , e8605 . https://doi.org/10.1002/ece3.8605 annual rhythms copepods diapause transcriptome wildlife zooplankton article 2022 ftuhipublicatio https://doi.org/10.1002/ece3.8605 2024-06-17T23:49:07Z The copepod Calanus finmarchicus (Crustacea, Copepoda) is a key zooplanktonic species with a crucial position in the North Atlantic food web and significant contributor to ocean carbon flux. Like many other high latitude animals, it has evolved a programmed arrested development called diapause to cope with long periods of limited food supply, while growth and reproduction are timed to take advantage of seasonal peaks in primary production. However, anthropogenic warming is inducing changes in the expected timing of phytoplankton blooms, suggesting phenological mismatches with negative consequences for the N. Atlantic ecosystem. While diapause mechanisms are mainly studied in terrestrial arthropods, specifically on laboratory model species, such as the fruit fly Drosophila, the molecular investigations of annual rhythms in wild marine species remain fragmentary. Here we performed a rigorous year-long monthly sampling campaign of C. finmarchicus in a Scottish Loch (UK; 56.45°N, 5.18°W) to generate an annual transcriptome. The mRNA of 36 samples (monthly triplicate of 25 individuals) have been deeply sequenced with an average depth of 137 ± 4 million reads (mean ± SE) per sample, aligned to the reference transcriptome, and filtered. We detail the quality assessment of the datasets and provide a high-quality resource for the investigation of wild annual transcriptomic rhythms (35,357 components) in a key diapausing Article in Journal/Newspaper Calanus finmarchicus North Atlantic Copepods University of the Highlands and Islands: Research Database of UHI Ecology and Evolution 12 2 |
institution |
Open Polar |
collection |
University of the Highlands and Islands: Research Database of UHI |
op_collection_id |
ftuhipublicatio |
language |
English |
topic |
annual rhythms copepods diapause transcriptome wildlife zooplankton |
spellingShingle |
annual rhythms copepods diapause transcriptome wildlife zooplankton Payton, Laura Noirot, Céline Last, Kim S. Grigor, Jordan Hüppe, Lukas Conway, David V. P. Dannemeyer, Mona Suin, Amandine Meyer, Bettina Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
topic_facet |
annual rhythms copepods diapause transcriptome wildlife zooplankton |
description |
The copepod Calanus finmarchicus (Crustacea, Copepoda) is a key zooplanktonic species with a crucial position in the North Atlantic food web and significant contributor to ocean carbon flux. Like many other high latitude animals, it has evolved a programmed arrested development called diapause to cope with long periods of limited food supply, while growth and reproduction are timed to take advantage of seasonal peaks in primary production. However, anthropogenic warming is inducing changes in the expected timing of phytoplankton blooms, suggesting phenological mismatches with negative consequences for the N. Atlantic ecosystem. While diapause mechanisms are mainly studied in terrestrial arthropods, specifically on laboratory model species, such as the fruit fly Drosophila, the molecular investigations of annual rhythms in wild marine species remain fragmentary. Here we performed a rigorous year-long monthly sampling campaign of C. finmarchicus in a Scottish Loch (UK; 56.45°N, 5.18°W) to generate an annual transcriptome. The mRNA of 36 samples (monthly triplicate of 25 individuals) have been deeply sequenced with an average depth of 137 ± 4 million reads (mean ± SE) per sample, aligned to the reference transcriptome, and filtered. We detail the quality assessment of the datasets and provide a high-quality resource for the investigation of wild annual transcriptomic rhythms (35,357 components) in a key diapausing |
format |
Article in Journal/Newspaper |
author |
Payton, Laura Noirot, Céline Last, Kim S. Grigor, Jordan Hüppe, Lukas Conway, David V. P. Dannemeyer, Mona Suin, Amandine Meyer, Bettina |
author_facet |
Payton, Laura Noirot, Céline Last, Kim S. Grigor, Jordan Hüppe, Lukas Conway, David V. P. Dannemeyer, Mona Suin, Amandine Meyer, Bettina |
author_sort |
Payton, Laura |
title |
Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
title_short |
Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
title_full |
Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
title_fullStr |
Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
title_full_unstemmed |
Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus |
title_sort |
annual transcriptome of a key zooplankton species, the copepod calanus finmarchicus |
publishDate |
2022 |
url |
https://pure.uhi.ac.uk/en/publications/d3342ae3-ec7f-4135-9578-fae43b1e95e3 https://doi.org/10.1002/ece3.8605 https://pureadmin.uhi.ac.uk/ws/files/17635110/Ecology_and_Evolution_2022_Payton_Annual_transcriptome_of_a_key_zooplankton_species_the_copepod_Calanus_finmarchicus.pdf https://onlinelibrary.wiley.com/doi/10.1002/ece3.8605 |
genre |
Calanus finmarchicus North Atlantic Copepods |
genre_facet |
Calanus finmarchicus North Atlantic Copepods |
op_source |
Payton , L , Noirot , C , Last , K S , Grigor , J , Hüppe , L , Conway , D V P , Dannemeyer , M , Suin , A & Meyer , B 2022 , ' Annual transcriptome of a key zooplankton species, the copepod Calanus finmarchicus ' , Ecology and Evolution , vol. 12 , no. 2 , e8605 . https://doi.org/10.1002/ece3.8605 |
op_relation |
https://pure.uhi.ac.uk/en/publications/d3342ae3-ec7f-4135-9578-fae43b1e95e3 |
op_rights |
info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1002/ece3.8605 |
container_title |
Ecology and Evolution |
container_volume |
12 |
container_issue |
2 |
_version_ |
1809904369763614720 |