Accuracy of assignment of Atlantic Salmon (Salmo salar L.) to rivers and regions in Scotland and Northeast England based on single nucleotide polymorphism (SNP) markers.:Assignment of Atlantic Salmon in Scotland and NE England using SNPs
Understanding the habitat use patterns of migratory fish, such as Atlantic salmon (Salmo salar L.), and the natural and anthropogenic impacts on them, is aided by the ability to identify individuals to their stock of origin. Presented here are the results of an analysis of informative single nucleot...
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2016
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ftuhipublicatio:oai:pure.atira.dk:publications/2a67421e-b72e-473c-ab4d-1c60f2bdf375 2024-06-23T07:51:11+00:00 Accuracy of assignment of Atlantic Salmon (Salmo salar L.) to rivers and regions in Scotland and Northeast England based on single nucleotide polymorphism (SNP) markers.:Assignment of Atlantic Salmon in Scotland and NE England using SNPs Gilbey, John Cauwelier, Eef Coulson, Mark W. Stradmeyer, Lee Sampayo, James N. Armstrong, Anja Verspoor, Eric Corrigan, Laura Shelley, Jonathan Middlemas, Stuart 2016-10-10 application/pdf https://pure.uhi.ac.uk/en/publications/2a67421e-b72e-473c-ab4d-1c60f2bdf375 https://doi.org/10.1371/journal.pone.0164327 https://pureadmin.uhi.ac.uk/ws/files/2024768/Accuracy_of_assignment_of_Atlantic_Salmon_.PDF eng eng https://pure.uhi.ac.uk/en/publications/2a67421e-b72e-473c-ab4d-1c60f2bdf375 info:eu-repo/semantics/openAccess Gilbey , J , Cauwelier , E , Coulson , M W , Stradmeyer , L , Sampayo , J N , Armstrong , A , Verspoor , E , Corrigan , L , Shelley , J & Middlemas , S 2016 , ' Accuracy of assignment of Atlantic Salmon (Salmo salar L.) to rivers and regions in Scotland and Northeast England based on single nucleotide polymorphism (SNP) markers. Assignment of Atlantic Salmon in Scotland and NE England using SNPs ' , PLoS ONE , vol. 11 , no. 10 , pp. 1-23 . https://doi.org/10.1371/journal.pone.0164327 Rivers Freshwater fish Fisheries Animal migration Genetic loci Fishes Marine environments Scotland article 2016 ftuhipublicatio https://doi.org/10.1371/journal.pone.0164327 2024-05-27T23:51:24Z Understanding the habitat use patterns of migratory fish, such as Atlantic salmon (Salmo salar L.), and the natural and anthropogenic impacts on them, is aided by the ability to identify individuals to their stock of origin. Presented here are the results of an analysis of informative single nucleotide polymorphic (SNP) markers for detecting genetic structuring in Atlantic salmon in Scotland and NE England and their ability to allow accurate genetic stock identification. 3,787 fish from 147 sites covering 27 rivers were screened at 5,568 SNP markers. In order to identify a cost-effective subset of SNPs, they were ranked according to their ability to differentiate between fish from different rivers. A panel of 288 SNPs was used to examine both individual assignments and mixed stock fisheries and eighteen assignment units were defined. The results improved greatly on previously available methods and, for the first time, fish caught in the marine environment can be confidently assigned to geographically coherent units within Scotland and NE England, including individual rivers. As such, this SNP panel has the potential to aid understanding of the various influences acting upon Atlantic salmon on their marine migrations, be they natural environmental variations and/or anthropogenic impacts, such as mixed stock fisheries and interactions with marine power generation installations. Article in Journal/Newspaper Atlantic salmon Salmo salar University of the Highlands and Islands: Research Database of UHI PLOS ONE 11 10 e0164327 |
institution |
Open Polar |
collection |
University of the Highlands and Islands: Research Database of UHI |
op_collection_id |
ftuhipublicatio |
language |
English |
topic |
Rivers Freshwater fish Fisheries Animal migration Genetic loci Fishes Marine environments Scotland |
spellingShingle |
Rivers Freshwater fish Fisheries Animal migration Genetic loci Fishes Marine environments Scotland Gilbey, John Cauwelier, Eef Coulson, Mark W. Stradmeyer, Lee Sampayo, James N. Armstrong, Anja Verspoor, Eric Corrigan, Laura Shelley, Jonathan Middlemas, Stuart Accuracy of assignment of Atlantic Salmon (Salmo salar L.) to rivers and regions in Scotland and Northeast England based on single nucleotide polymorphism (SNP) markers.:Assignment of Atlantic Salmon in Scotland and NE England using SNPs |
topic_facet |
Rivers Freshwater fish Fisheries Animal migration Genetic loci Fishes Marine environments Scotland |
description |
Understanding the habitat use patterns of migratory fish, such as Atlantic salmon (Salmo salar L.), and the natural and anthropogenic impacts on them, is aided by the ability to identify individuals to their stock of origin. Presented here are the results of an analysis of informative single nucleotide polymorphic (SNP) markers for detecting genetic structuring in Atlantic salmon in Scotland and NE England and their ability to allow accurate genetic stock identification. 3,787 fish from 147 sites covering 27 rivers were screened at 5,568 SNP markers. In order to identify a cost-effective subset of SNPs, they were ranked according to their ability to differentiate between fish from different rivers. A panel of 288 SNPs was used to examine both individual assignments and mixed stock fisheries and eighteen assignment units were defined. The results improved greatly on previously available methods and, for the first time, fish caught in the marine environment can be confidently assigned to geographically coherent units within Scotland and NE England, including individual rivers. As such, this SNP panel has the potential to aid understanding of the various influences acting upon Atlantic salmon on their marine migrations, be they natural environmental variations and/or anthropogenic impacts, such as mixed stock fisheries and interactions with marine power generation installations. |
format |
Article in Journal/Newspaper |
author |
Gilbey, John Cauwelier, Eef Coulson, Mark W. Stradmeyer, Lee Sampayo, James N. Armstrong, Anja Verspoor, Eric Corrigan, Laura Shelley, Jonathan Middlemas, Stuart |
author_facet |
Gilbey, John Cauwelier, Eef Coulson, Mark W. Stradmeyer, Lee Sampayo, James N. Armstrong, Anja Verspoor, Eric Corrigan, Laura Shelley, Jonathan Middlemas, Stuart |
author_sort |
Gilbey, John |
title |
Accuracy of assignment of Atlantic Salmon (Salmo salar L.) to rivers and regions in Scotland and Northeast England based on single nucleotide polymorphism (SNP) markers.:Assignment of Atlantic Salmon in Scotland and NE England using SNPs |
title_short |
Accuracy of assignment of Atlantic Salmon (Salmo salar L.) to rivers and regions in Scotland and Northeast England based on single nucleotide polymorphism (SNP) markers.:Assignment of Atlantic Salmon in Scotland and NE England using SNPs |
title_full |
Accuracy of assignment of Atlantic Salmon (Salmo salar L.) to rivers and regions in Scotland and Northeast England based on single nucleotide polymorphism (SNP) markers.:Assignment of Atlantic Salmon in Scotland and NE England using SNPs |
title_fullStr |
Accuracy of assignment of Atlantic Salmon (Salmo salar L.) to rivers and regions in Scotland and Northeast England based on single nucleotide polymorphism (SNP) markers.:Assignment of Atlantic Salmon in Scotland and NE England using SNPs |
title_full_unstemmed |
Accuracy of assignment of Atlantic Salmon (Salmo salar L.) to rivers and regions in Scotland and Northeast England based on single nucleotide polymorphism (SNP) markers.:Assignment of Atlantic Salmon in Scotland and NE England using SNPs |
title_sort |
accuracy of assignment of atlantic salmon (salmo salar l.) to rivers and regions in scotland and northeast england based on single nucleotide polymorphism (snp) markers.:assignment of atlantic salmon in scotland and ne england using snps |
publishDate |
2016 |
url |
https://pure.uhi.ac.uk/en/publications/2a67421e-b72e-473c-ab4d-1c60f2bdf375 https://doi.org/10.1371/journal.pone.0164327 https://pureadmin.uhi.ac.uk/ws/files/2024768/Accuracy_of_assignment_of_Atlantic_Salmon_.PDF |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_source |
Gilbey , J , Cauwelier , E , Coulson , M W , Stradmeyer , L , Sampayo , J N , Armstrong , A , Verspoor , E , Corrigan , L , Shelley , J & Middlemas , S 2016 , ' Accuracy of assignment of Atlantic Salmon (Salmo salar L.) to rivers and regions in Scotland and Northeast England based on single nucleotide polymorphism (SNP) markers. Assignment of Atlantic Salmon in Scotland and NE England using SNPs ' , PLoS ONE , vol. 11 , no. 10 , pp. 1-23 . https://doi.org/10.1371/journal.pone.0164327 |
op_relation |
https://pure.uhi.ac.uk/en/publications/2a67421e-b72e-473c-ab4d-1c60f2bdf375 |
op_rights |
info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1371/journal.pone.0164327 |
container_title |
PLOS ONE |
container_volume |
11 |
container_issue |
10 |
container_start_page |
e0164327 |
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1802642204619964416 |