The oyster genome reveals stress adaptation and complexity of shell formation
The Pacific oyster Crassostrea gigas belongs to one of the most species-rich but genomically poorly explored phyla, the Mollusca. Here we report the sequencing and assembly of the oyster genome using short reads and a fosmid-pooling strategy, along with transcriptomes of development and stress respo...
Published in: | Nature |
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Format: | Article in Journal/Newspaper |
Language: | English |
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2012
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Online Access: | https://hdl.handle.net/1983/c7274b89-08e0-47bb-a472-a441b7b23803 https://research-information.bris.ac.uk/en/publications/c7274b89-08e0-47bb-a472-a441b7b23803 https://doi.org/10.1038/nature11413 http://www.scopus.com/inward/record.url?scp=84867088834&partnerID=8YFLogxK |
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ftubristolcris:oai:research-information.bris.ac.uk:publications/c7274b89-08e0-47bb-a472-a441b7b23803 2024-05-19T07:39:17+00:00 The oyster genome reveals stress adaptation and complexity of shell formation Wang, Jun Zhang, Guofan Fang, Xiaodong Guo, Ximing Li, Li Luo, Ruibang Xu, Fei Yang, Pengcheng Zhang, Linlin Wang, Xiaotong Qi, Haigang Xiong, Zhiqiang Que, Huayong Xie, Yinlong Holland, Peter W.H. Paps, Jordi Zhu, Yabing Wu, Fucun Chen, Yuanxin Wang, Jiafeng Peng, Chunfang Meng, Jie Yang, Lan Liu, Jun Wen, Bo Zhang, Na Huang, Zhiyong Zhu, Qihui Feng, Yue Mount, Andrew Hedgecock, Dennis Xu, Zhe Liu, Yunjie Domazet-Lošo, Tomislav Du, Yishuai Sun, Xiaoqing Zhang, Shoudu Liu, Binghang Cheng, Peizhou Jiang, Xuanting Li, Juan Fan, Dingding Wang, Wei Fu, Wenjing Wang, Tong Wang, Bo Zhang, Jibiao Peng, Zhiyu Li, Yingxiang Li, Na Wang, Jinpeng Chen, Maoshan He, Yan Tan, Fengji Song, Xiaorui Zheng, Qiumei Huang, Ronglian Yang, Hailong Du, Xuedi Chen, Li Yang, Mei Gaffney, Patrick M. Wang, Shan Luo, Longhai She, Zhicai Ming, Yao Huang, Wen Zhang, Shu Huang, Baoyu Zhang, Yong Qu, Tao Ni, Peixiang Miao, Guoying Wang, Junyi Wang, Qiang Steinberg, Christian E.W. Wang, Haiyan Li, Ning Qian, Lumin Zhang, Guojie Li, Yingrui Yang, Huanming Yin, Ye Wang, Jian 2012-10-04 https://hdl.handle.net/1983/c7274b89-08e0-47bb-a472-a441b7b23803 https://research-information.bris.ac.uk/en/publications/c7274b89-08e0-47bb-a472-a441b7b23803 https://doi.org/10.1038/nature11413 http://www.scopus.com/inward/record.url?scp=84867088834&partnerID=8YFLogxK eng eng https://research-information.bris.ac.uk/en/publications/c7274b89-08e0-47bb-a472-a441b7b23803 info:eu-repo/semantics/restrictedAccess Wang , J , Zhang , G , Fang , X , Guo , X , Li , L , Luo , R , Xu , F , Yang , P , Zhang , L , Wang , X , Qi , H , Xiong , Z , Que , H , Xie , Y , Holland , P W H , Paps , J , Zhu , Y , Wu , F , Chen , Y , Wang , J , Peng , C , Meng , J , Yang , L , Liu , J , Wen , B , Zhang , N , Huang , Z , Zhu , Q , Feng , Y , Mount , A , Hedgecock , D , Xu , Z , Liu , Y , Domazet-Lošo , T , Du , Y , Sun , X , Zhang , S , Liu , B , Cheng , P , Jiang , X , Li , J , Fan , D , Wang , W , Fu , W , Wang , T , Wang , B , Zhang , J , Peng , Z , Li , Y , Li , N , Wang , J , Chen , M , He , Y , Tan , F , Song , X , Zheng , Q , Huang , R , Yang , H , Du , X , Chen , L , Yang , M , Gaffney , P M , Wang , S , Luo , L , She , Z , Ming , Y , Huang , W , Zhang , S , Huang , B , Zhang , Y , Qu , T , Ni , P , Miao , G , Wang , J , Wang , Q , Steinberg , C E W , Wang , H , Li , N , Qian , L , Zhang , G , Li , Y , Yang , H , Yin , Y & Wang , J 2012 , ' The oyster genome reveals stress adaptation and complexity of shell formation ' , Nature , vol. 490 , no. 7418 , pp. 49-54 . https://doi.org/10.1038/nature11413 article 2012 ftubristolcris https://doi.org/10.1038/nature11413 2024-04-30T23:51:18Z The Pacific oyster Crassostrea gigas belongs to one of the most species-rich but genomically poorly explored phyla, the Mollusca. Here we report the sequencing and assembly of the oyster genome using short reads and a fosmid-pooling strategy, along with transcriptomes of development and stress response and the proteome of the shell. The oyster genome is highly polymorphic and rich in repetitive sequences, with some transposable elements still actively shaping variation. Transcriptome studies reveal an extensive set of genes responding to environmental stress. The expansion of genes coding for heat shock protein 70 and inhibitors of apoptosis is probably central to the oyster's adaptation to sessile life in the highly stressful intertidal zone. Our analyses also show that shell formation in molluscs is more complex than currently understood and involves extensive participation of cells and their exosomes. The oyster genome sequence fills a void in our understanding of the Lophotrochozoa. Article in Journal/Newspaper Crassostrea gigas Pacific oyster University of Bristol: Bristol Research Nature 490 7418 49 54 |
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Open Polar |
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University of Bristol: Bristol Research |
op_collection_id |
ftubristolcris |
language |
English |
description |
The Pacific oyster Crassostrea gigas belongs to one of the most species-rich but genomically poorly explored phyla, the Mollusca. Here we report the sequencing and assembly of the oyster genome using short reads and a fosmid-pooling strategy, along with transcriptomes of development and stress response and the proteome of the shell. The oyster genome is highly polymorphic and rich in repetitive sequences, with some transposable elements still actively shaping variation. Transcriptome studies reveal an extensive set of genes responding to environmental stress. The expansion of genes coding for heat shock protein 70 and inhibitors of apoptosis is probably central to the oyster's adaptation to sessile life in the highly stressful intertidal zone. Our analyses also show that shell formation in molluscs is more complex than currently understood and involves extensive participation of cells and their exosomes. The oyster genome sequence fills a void in our understanding of the Lophotrochozoa. |
format |
Article in Journal/Newspaper |
author |
Wang, Jun Zhang, Guofan Fang, Xiaodong Guo, Ximing Li, Li Luo, Ruibang Xu, Fei Yang, Pengcheng Zhang, Linlin Wang, Xiaotong Qi, Haigang Xiong, Zhiqiang Que, Huayong Xie, Yinlong Holland, Peter W.H. Paps, Jordi Zhu, Yabing Wu, Fucun Chen, Yuanxin Wang, Jiafeng Peng, Chunfang Meng, Jie Yang, Lan Liu, Jun Wen, Bo Zhang, Na Huang, Zhiyong Zhu, Qihui Feng, Yue Mount, Andrew Hedgecock, Dennis Xu, Zhe Liu, Yunjie Domazet-Lošo, Tomislav Du, Yishuai Sun, Xiaoqing Zhang, Shoudu Liu, Binghang Cheng, Peizhou Jiang, Xuanting Li, Juan Fan, Dingding Wang, Wei Fu, Wenjing Wang, Tong Wang, Bo Zhang, Jibiao Peng, Zhiyu Li, Yingxiang Li, Na Wang, Jinpeng Chen, Maoshan He, Yan Tan, Fengji Song, Xiaorui Zheng, Qiumei Huang, Ronglian Yang, Hailong Du, Xuedi Chen, Li Yang, Mei Gaffney, Patrick M. Wang, Shan Luo, Longhai She, Zhicai Ming, Yao Huang, Wen Zhang, Shu Huang, Baoyu Zhang, Yong Qu, Tao Ni, Peixiang Miao, Guoying Wang, Junyi Wang, Qiang Steinberg, Christian E.W. Wang, Haiyan Li, Ning Qian, Lumin Zhang, Guojie Li, Yingrui Yang, Huanming Yin, Ye Wang, Jian |
spellingShingle |
Wang, Jun Zhang, Guofan Fang, Xiaodong Guo, Ximing Li, Li Luo, Ruibang Xu, Fei Yang, Pengcheng Zhang, Linlin Wang, Xiaotong Qi, Haigang Xiong, Zhiqiang Que, Huayong Xie, Yinlong Holland, Peter W.H. Paps, Jordi Zhu, Yabing Wu, Fucun Chen, Yuanxin Wang, Jiafeng Peng, Chunfang Meng, Jie Yang, Lan Liu, Jun Wen, Bo Zhang, Na Huang, Zhiyong Zhu, Qihui Feng, Yue Mount, Andrew Hedgecock, Dennis Xu, Zhe Liu, Yunjie Domazet-Lošo, Tomislav Du, Yishuai Sun, Xiaoqing Zhang, Shoudu Liu, Binghang Cheng, Peizhou Jiang, Xuanting Li, Juan Fan, Dingding Wang, Wei Fu, Wenjing Wang, Tong Wang, Bo Zhang, Jibiao Peng, Zhiyu Li, Yingxiang Li, Na Wang, Jinpeng Chen, Maoshan He, Yan Tan, Fengji Song, Xiaorui Zheng, Qiumei Huang, Ronglian Yang, Hailong Du, Xuedi Chen, Li Yang, Mei Gaffney, Patrick M. Wang, Shan Luo, Longhai She, Zhicai Ming, Yao Huang, Wen Zhang, Shu Huang, Baoyu Zhang, Yong Qu, Tao Ni, Peixiang Miao, Guoying Wang, Junyi Wang, Qiang Steinberg, Christian E.W. Wang, Haiyan Li, Ning Qian, Lumin Zhang, Guojie Li, Yingrui Yang, Huanming Yin, Ye Wang, Jian The oyster genome reveals stress adaptation and complexity of shell formation |
author_facet |
Wang, Jun Zhang, Guofan Fang, Xiaodong Guo, Ximing Li, Li Luo, Ruibang Xu, Fei Yang, Pengcheng Zhang, Linlin Wang, Xiaotong Qi, Haigang Xiong, Zhiqiang Que, Huayong Xie, Yinlong Holland, Peter W.H. Paps, Jordi Zhu, Yabing Wu, Fucun Chen, Yuanxin Wang, Jiafeng Peng, Chunfang Meng, Jie Yang, Lan Liu, Jun Wen, Bo Zhang, Na Huang, Zhiyong Zhu, Qihui Feng, Yue Mount, Andrew Hedgecock, Dennis Xu, Zhe Liu, Yunjie Domazet-Lošo, Tomislav Du, Yishuai Sun, Xiaoqing Zhang, Shoudu Liu, Binghang Cheng, Peizhou Jiang, Xuanting Li, Juan Fan, Dingding Wang, Wei Fu, Wenjing Wang, Tong Wang, Bo Zhang, Jibiao Peng, Zhiyu Li, Yingxiang Li, Na Wang, Jinpeng Chen, Maoshan He, Yan Tan, Fengji Song, Xiaorui Zheng, Qiumei Huang, Ronglian Yang, Hailong Du, Xuedi Chen, Li Yang, Mei Gaffney, Patrick M. Wang, Shan Luo, Longhai She, Zhicai Ming, Yao Huang, Wen Zhang, Shu Huang, Baoyu Zhang, Yong Qu, Tao Ni, Peixiang Miao, Guoying Wang, Junyi Wang, Qiang Steinberg, Christian E.W. Wang, Haiyan Li, Ning Qian, Lumin Zhang, Guojie Li, Yingrui Yang, Huanming Yin, Ye Wang, Jian |
author_sort |
Wang, Jun |
title |
The oyster genome reveals stress adaptation and complexity of shell formation |
title_short |
The oyster genome reveals stress adaptation and complexity of shell formation |
title_full |
The oyster genome reveals stress adaptation and complexity of shell formation |
title_fullStr |
The oyster genome reveals stress adaptation and complexity of shell formation |
title_full_unstemmed |
The oyster genome reveals stress adaptation and complexity of shell formation |
title_sort |
oyster genome reveals stress adaptation and complexity of shell formation |
publishDate |
2012 |
url |
https://hdl.handle.net/1983/c7274b89-08e0-47bb-a472-a441b7b23803 https://research-information.bris.ac.uk/en/publications/c7274b89-08e0-47bb-a472-a441b7b23803 https://doi.org/10.1038/nature11413 http://www.scopus.com/inward/record.url?scp=84867088834&partnerID=8YFLogxK |
genre |
Crassostrea gigas Pacific oyster |
genre_facet |
Crassostrea gigas Pacific oyster |
op_source |
Wang , J , Zhang , G , Fang , X , Guo , X , Li , L , Luo , R , Xu , F , Yang , P , Zhang , L , Wang , X , Qi , H , Xiong , Z , Que , H , Xie , Y , Holland , P W H , Paps , J , Zhu , Y , Wu , F , Chen , Y , Wang , J , Peng , C , Meng , J , Yang , L , Liu , J , Wen , B , Zhang , N , Huang , Z , Zhu , Q , Feng , Y , Mount , A , Hedgecock , D , Xu , Z , Liu , Y , Domazet-Lošo , T , Du , Y , Sun , X , Zhang , S , Liu , B , Cheng , P , Jiang , X , Li , J , Fan , D , Wang , W , Fu , W , Wang , T , Wang , B , Zhang , J , Peng , Z , Li , Y , Li , N , Wang , J , Chen , M , He , Y , Tan , F , Song , X , Zheng , Q , Huang , R , Yang , H , Du , X , Chen , L , Yang , M , Gaffney , P M , Wang , S , Luo , L , She , Z , Ming , Y , Huang , W , Zhang , S , Huang , B , Zhang , Y , Qu , T , Ni , P , Miao , G , Wang , J , Wang , Q , Steinberg , C E W , Wang , H , Li , N , Qian , L , Zhang , G , Li , Y , Yang , H , Yin , Y & Wang , J 2012 , ' The oyster genome reveals stress adaptation and complexity of shell formation ' , Nature , vol. 490 , no. 7418 , pp. 49-54 . https://doi.org/10.1038/nature11413 |
op_relation |
https://research-information.bris.ac.uk/en/publications/c7274b89-08e0-47bb-a472-a441b7b23803 |
op_rights |
info:eu-repo/semantics/restrictedAccess |
op_doi |
https://doi.org/10.1038/nature11413 |
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Nature |
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490 |
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7418 |
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49 |
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54 |
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1799478847662456832 |