Mitochondrial and plastid genome variability of Corallina officials (Corallinales, Rhodophyta)
Corallina officinalis is a calcifying red alga, common in tide pools in the North Atlantic with occasional reports from the north-east Pacific. It is an important habitat-forming alga, providing shelter and substrata to many other organisms. To date there are only five published organellar genomes f...
Published in: | Applied Phycology |
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Online Access: | https://hdl.handle.net/1983/86fa6506-594f-4842-939b-ad3226f1d94e https://research-information.bris.ac.uk/en/publications/86fa6506-594f-4842-939b-ad3226f1d94e https://doi.org/10.1080/26388081.2020.1827940 https://research-information.bris.ac.uk/ws/files/274237881/Yesson_et_al._2020_Mitochondrial_and_plastid_genome_variability_of_Corallina_officinalis_Corallinales_Rhodophyta_.pdf |
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ftubristolcris:oai:research-information.bris.ac.uk:publications/86fa6506-594f-4842-939b-ad3226f1d94e 2024-02-04T10:01:32+01:00 Mitochondrial and plastid genome variability of Corallina officials (Corallinales, Rhodophyta) Yesson, Chris Williamson, Christopher Bian, Xueni Briscoe, Andrew G. Brodie, Juliet 2020-10-23 application/pdf https://hdl.handle.net/1983/86fa6506-594f-4842-939b-ad3226f1d94e https://research-information.bris.ac.uk/en/publications/86fa6506-594f-4842-939b-ad3226f1d94e https://doi.org/10.1080/26388081.2020.1827940 https://research-information.bris.ac.uk/ws/files/274237881/Yesson_et_al._2020_Mitochondrial_and_plastid_genome_variability_of_Corallina_officinalis_Corallinales_Rhodophyta_.pdf eng eng info:eu-repo/semantics/openAccess Yesson , C , Williamson , C , Bian , X , Briscoe , A G & Brodie , J 2020 , ' Mitochondrial and plastid genome variability of Corallina officials (Corallinales, Rhodophyta) ' , Journal of Applied Phycology , vol. 1 , no. 1 , pp. 73-79 . https://doi.org/10.1080/26388081.2020.1827940 Coral Weed mitogenome plastome organelle genomes red algae Rhodophyta article 2020 ftubristolcris https://doi.org/10.1080/26388081.2020.1827940 2024-01-05T00:01:25Z Corallina officinalis is a calcifying red alga, common in tide pools in the North Atlantic with occasional reports from the north-east Pacific. It is an important habitat-forming alga, providing shelter and substrata to many other organisms. To date there are only five published organellar genomes for Corallina, including C. chilensis and C. ferreyrae. This study reports the first four published plastid genomes for C. officinalis, along with three new mitogenomes from samples in the United Kingdom, Spain and Iceland. The plastid genome is 178 kbp and 99.9% of bases are identical for all samples. The mitogenomes are more variable than the plastid genomes, with lengths varying from 26.2 to 26.7 kbp and 99.0% base identity. Structure and length of both of the genomes are consistent with other published Corallina genomes. The most variable mitochondrial gene is sdhD (3.3% variability), while all plastid genes have <1% base variability, with the most variable being psb30 (0.95% variability). The stability of the plastid genome means it is not useful for examining intra-specific variability within Corallina. We discuss whether the ratio of mitogenome and plastome sequences recovered in the readpool of NGS sequencing is indicative of relative copy number. Article in Journal/Newspaper Iceland North Atlantic University of Bristol: Bristol Research Pacific Applied Phycology 1 1 73 79 |
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Open Polar |
collection |
University of Bristol: Bristol Research |
op_collection_id |
ftubristolcris |
language |
English |
topic |
Coral Weed mitogenome plastome organelle genomes red algae Rhodophyta |
spellingShingle |
Coral Weed mitogenome plastome organelle genomes red algae Rhodophyta Yesson, Chris Williamson, Christopher Bian, Xueni Briscoe, Andrew G. Brodie, Juliet Mitochondrial and plastid genome variability of Corallina officials (Corallinales, Rhodophyta) |
topic_facet |
Coral Weed mitogenome plastome organelle genomes red algae Rhodophyta |
description |
Corallina officinalis is a calcifying red alga, common in tide pools in the North Atlantic with occasional reports from the north-east Pacific. It is an important habitat-forming alga, providing shelter and substrata to many other organisms. To date there are only five published organellar genomes for Corallina, including C. chilensis and C. ferreyrae. This study reports the first four published plastid genomes for C. officinalis, along with three new mitogenomes from samples in the United Kingdom, Spain and Iceland. The plastid genome is 178 kbp and 99.9% of bases are identical for all samples. The mitogenomes are more variable than the plastid genomes, with lengths varying from 26.2 to 26.7 kbp and 99.0% base identity. Structure and length of both of the genomes are consistent with other published Corallina genomes. The most variable mitochondrial gene is sdhD (3.3% variability), while all plastid genes have <1% base variability, with the most variable being psb30 (0.95% variability). The stability of the plastid genome means it is not useful for examining intra-specific variability within Corallina. We discuss whether the ratio of mitogenome and plastome sequences recovered in the readpool of NGS sequencing is indicative of relative copy number. |
format |
Article in Journal/Newspaper |
author |
Yesson, Chris Williamson, Christopher Bian, Xueni Briscoe, Andrew G. Brodie, Juliet |
author_facet |
Yesson, Chris Williamson, Christopher Bian, Xueni Briscoe, Andrew G. Brodie, Juliet |
author_sort |
Yesson, Chris |
title |
Mitochondrial and plastid genome variability of Corallina officials (Corallinales, Rhodophyta) |
title_short |
Mitochondrial and plastid genome variability of Corallina officials (Corallinales, Rhodophyta) |
title_full |
Mitochondrial and plastid genome variability of Corallina officials (Corallinales, Rhodophyta) |
title_fullStr |
Mitochondrial and plastid genome variability of Corallina officials (Corallinales, Rhodophyta) |
title_full_unstemmed |
Mitochondrial and plastid genome variability of Corallina officials (Corallinales, Rhodophyta) |
title_sort |
mitochondrial and plastid genome variability of corallina officials (corallinales, rhodophyta) |
publishDate |
2020 |
url |
https://hdl.handle.net/1983/86fa6506-594f-4842-939b-ad3226f1d94e https://research-information.bris.ac.uk/en/publications/86fa6506-594f-4842-939b-ad3226f1d94e https://doi.org/10.1080/26388081.2020.1827940 https://research-information.bris.ac.uk/ws/files/274237881/Yesson_et_al._2020_Mitochondrial_and_plastid_genome_variability_of_Corallina_officinalis_Corallinales_Rhodophyta_.pdf |
geographic |
Pacific |
geographic_facet |
Pacific |
genre |
Iceland North Atlantic |
genre_facet |
Iceland North Atlantic |
op_source |
Yesson , C , Williamson , C , Bian , X , Briscoe , A G & Brodie , J 2020 , ' Mitochondrial and plastid genome variability of Corallina officials (Corallinales, Rhodophyta) ' , Journal of Applied Phycology , vol. 1 , no. 1 , pp. 73-79 . https://doi.org/10.1080/26388081.2020.1827940 |
op_rights |
info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1080/26388081.2020.1827940 |
container_title |
Applied Phycology |
container_volume |
1 |
container_issue |
1 |
container_start_page |
73 |
op_container_end_page |
79 |
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1789967494417481728 |