SHIMMER (1.0):a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems

SHIMMER (Soil biogeocHemIcal Model for Microbial Ecosystem Response) is a new numerical modelling framework designed to simulate microbial dynamics and biogeochemical cycling during initial ecosystem development in glacier forefield soils. However, it is also transferable to other extreme ecosystem...

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Published in:Geoscientific Model Development
Main Authors: Bradley, James, Anesio, Alexandre, Singarayer, Joy, Heath, Michael, Arndt, Sandra
Format: Article in Journal/Newspaper
Language:English
Published: 2015
Subjects:
Online Access:https://hdl.handle.net/1983/7cf0d28c-59b3-4990-98e2-b18cdcadd59d
https://research-information.bris.ac.uk/en/publications/7cf0d28c-59b3-4990-98e2-b18cdcadd59d
https://doi.org/10.5194/gmd-8-3441-2015
https://research-information.bris.ac.uk/ws/files/53676873/BRADLEY_2015_GMD_SHIMMER.pdf
http://www.geosci-model-dev.net/8/3441/2015/gmd-8-3441-2015.html
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spelling ftubristolcris:oai:research-information.bris.ac.uk:publications/7cf0d28c-59b3-4990-98e2-b18cdcadd59d 2024-01-28T10:05:57+01:00 SHIMMER (1.0):a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems Bradley, James Anesio, Alexandre Singarayer, Joy Heath, Michael Arndt, Sandra 2015-10-28 application/pdf https://hdl.handle.net/1983/7cf0d28c-59b3-4990-98e2-b18cdcadd59d https://research-information.bris.ac.uk/en/publications/7cf0d28c-59b3-4990-98e2-b18cdcadd59d https://doi.org/10.5194/gmd-8-3441-2015 https://research-information.bris.ac.uk/ws/files/53676873/BRADLEY_2015_GMD_SHIMMER.pdf http://www.geosci-model-dev.net/8/3441/2015/gmd-8-3441-2015.html eng eng info:eu-repo/semantics/openAccess Bradley , J , Anesio , A , Singarayer , J , Heath , M & Arndt , S 2015 , ' SHIMMER (1.0) : a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems ' , Geoscientific Model Development , vol. 8 , no. 10 , pp. 3441-3470 . https://doi.org/10.5194/gmd-8-3441-2015 article 2015 ftubristolcris https://doi.org/10.5194/gmd-8-3441-2015 2024-01-04T23:46:53Z SHIMMER (Soil biogeocHemIcal Model for Microbial Ecosystem Response) is a new numerical modelling framework designed to simulate microbial dynamics and biogeochemical cycling during initial ecosystem development in glacier forefield soils. However, it is also transferable to other extreme ecosystem types (such as desert soils or the surface of glaciers). The rationale for model development arises from decades of empirical observations in glacier forefields, and enables a quantitative and process focussed approach. Here, we provide a detailed description of SHIMMER, test its performance in two case study forefields: the Damma Glacier (Switzerland) and the Athabasca Glacier (Canada) and analyse sensitivity to identify the most sensitive and unconstrained model parameters. Results show that the accumulation of microbial biomass is highly dependent on variation in microbial growth and death rate constants, Q10 values, the active fraction of microbial biomass and the reactivity of organic matter. The model correctly predicts the rapid accumulation of microbial biomass observed during the initial stages of succession in the forefields of both the case study systems. Primary production is responsible for the initial build-up of labile substrate that subsequently supports heterotrophic growth. However, allochthonous contributions of organic matter, and nitrogen fixation, are important in sustaining this productivity. The development and application of SHIMMER also highlights aspects of these systems that require further empirical research: quantifying nutrient budgets and biogeochemical rates, exploring seasonality and microbial growth and cell death. This will lead to increased understanding of how glacier forefields contribute to global biogeochemical cycling and climate under future ice retreat. Article in Journal/Newspaper glacier* University of Bristol: Bristol Research Canada Geoscientific Model Development 8 10 3441 3470
institution Open Polar
collection University of Bristol: Bristol Research
op_collection_id ftubristolcris
language English
description SHIMMER (Soil biogeocHemIcal Model for Microbial Ecosystem Response) is a new numerical modelling framework designed to simulate microbial dynamics and biogeochemical cycling during initial ecosystem development in glacier forefield soils. However, it is also transferable to other extreme ecosystem types (such as desert soils or the surface of glaciers). The rationale for model development arises from decades of empirical observations in glacier forefields, and enables a quantitative and process focussed approach. Here, we provide a detailed description of SHIMMER, test its performance in two case study forefields: the Damma Glacier (Switzerland) and the Athabasca Glacier (Canada) and analyse sensitivity to identify the most sensitive and unconstrained model parameters. Results show that the accumulation of microbial biomass is highly dependent on variation in microbial growth and death rate constants, Q10 values, the active fraction of microbial biomass and the reactivity of organic matter. The model correctly predicts the rapid accumulation of microbial biomass observed during the initial stages of succession in the forefields of both the case study systems. Primary production is responsible for the initial build-up of labile substrate that subsequently supports heterotrophic growth. However, allochthonous contributions of organic matter, and nitrogen fixation, are important in sustaining this productivity. The development and application of SHIMMER also highlights aspects of these systems that require further empirical research: quantifying nutrient budgets and biogeochemical rates, exploring seasonality and microbial growth and cell death. This will lead to increased understanding of how glacier forefields contribute to global biogeochemical cycling and climate under future ice retreat.
format Article in Journal/Newspaper
author Bradley, James
Anesio, Alexandre
Singarayer, Joy
Heath, Michael
Arndt, Sandra
spellingShingle Bradley, James
Anesio, Alexandre
Singarayer, Joy
Heath, Michael
Arndt, Sandra
SHIMMER (1.0):a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
author_facet Bradley, James
Anesio, Alexandre
Singarayer, Joy
Heath, Michael
Arndt, Sandra
author_sort Bradley, James
title SHIMMER (1.0):a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
title_short SHIMMER (1.0):a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
title_full SHIMMER (1.0):a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
title_fullStr SHIMMER (1.0):a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
title_full_unstemmed SHIMMER (1.0):a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
title_sort shimmer (1.0):a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
publishDate 2015
url https://hdl.handle.net/1983/7cf0d28c-59b3-4990-98e2-b18cdcadd59d
https://research-information.bris.ac.uk/en/publications/7cf0d28c-59b3-4990-98e2-b18cdcadd59d
https://doi.org/10.5194/gmd-8-3441-2015
https://research-information.bris.ac.uk/ws/files/53676873/BRADLEY_2015_GMD_SHIMMER.pdf
http://www.geosci-model-dev.net/8/3441/2015/gmd-8-3441-2015.html
geographic Canada
geographic_facet Canada
genre glacier*
genre_facet glacier*
op_source Bradley , J , Anesio , A , Singarayer , J , Heath , M & Arndt , S 2015 , ' SHIMMER (1.0) : a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems ' , Geoscientific Model Development , vol. 8 , no. 10 , pp. 3441-3470 . https://doi.org/10.5194/gmd-8-3441-2015
op_rights info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.5194/gmd-8-3441-2015
container_title Geoscientific Model Development
container_volume 8
container_issue 10
container_start_page 3441
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