Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas) revealed by genome-wide SNP data
Vendrami D, Houston RD, Gharbi K, et al. Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas) revealed by genome-wide SNP data. Evolutionary Applications . 2018;12(3):1-16. Cultivated bivalves are important not only because...
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Online Access: | https://nbn-resolving.org/urn:nbn:de:0070-pub-29329115 https://pub.uni-bielefeld.de/record/2932911 https://pub.uni-bielefeld.de/download/2932911/2932912 |
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ftubbiepub:oai:pub.uni-bielefeld.de:2932911 2023-05-15T14:02:40+02:00 Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas) revealed by genome-wide SNP data Vendrami, David Houston, Ross D. Gharbi, Karim Telesca, Luca Gutierrez, Alejandro P. Gurney-Smith, Helen Hasegawa, Natsuki Boudry, Pierre Hoffman, Joseph 2018 https://nbn-resolving.org/urn:nbn:de:0070-pub-29329115 https://pub.uni-bielefeld.de/record/2932911 https://pub.uni-bielefeld.de/download/2932911/2932912 eng eng Wiley info:eu-repo/semantics/altIdentifier/doi/10.1111/eva.12736 info:eu-repo/semantics/altIdentifier/issn/1752-4571 info:eu-repo/semantics/altIdentifier/wos/000459328300012 info:eu-repo/semantics/altIdentifier/pmid/30847007 https://nbn-resolving.org/urn:nbn:de:0070-pub-29329115 https://pub.uni-bielefeld.de/record/2932911 https://pub.uni-bielefeld.de/download/2932911/2932912 info:eu-repo/semantics/openAccess https://rightsstatements.org/vocab/InC/1.0/ ddc:590 http://purl.org/coar/resource_type/c_6501 info:eu-repo/semantics/article doc-type:article text 2018 ftubbiepub https://doi.org/10.1111/eva.12736 2022-02-08T22:34:46Z Vendrami D, Houston RD, Gharbi K, et al. Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas) revealed by genome-wide SNP data. Evolutionary Applications . 2018;12(3):1-16. Cultivated bivalves are important not only because of their economic value, but also due to their impacts on natural ecosystems. The Pacific oyster (Crassostrea gigas) is the world's most heavily cultivated shellfish species and has been introduced to all continents except Antarctica for aquaculture. We therefore used a medium‐density single nucleotide polymorphism (SNP) array to investigate the genetic structure of this species in Europe, where it was introduced during the 1960s and has since become a prolific invader of coastal ecosystems across the continent. We analyzed 21,499 polymorphic SNPs in 232 individuals from 23 localities spanning a latitudinal cline from Portugal to Norway and including the source populations of Japan and Canada. We confirmed the results of previous studies by finding clear support for a southern and a northern group, with the former being indistinguishable from the source populations indicating the absence of a pronounced founder effect. We furthermore conducted a large‐scale comparison of oysters sampled from the wild and from hatcheries to reveal substantial genetic differences including significantly higher levels of inbreeding in some but not all of the sampled hatchery cohorts. These findings were confirmed by a smaller but representative SNP dataset generated using restriction site‐associated DNA sequencing. We therefore conclude that genomic approaches can generate increasingly detailed insights into the genetics of wild and hatchery produced Pacific oysters. Article in Journal/Newspaper Antarc* Antarctica Crassostrea gigas Pacific oyster PUB - Publications at Bielefeld University Canada Norway Pacific Evolutionary Applications 12 3 519 534 |
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PUB - Publications at Bielefeld University |
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ftubbiepub |
language |
English |
topic |
ddc:590 |
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ddc:590 Vendrami, David Houston, Ross D. Gharbi, Karim Telesca, Luca Gutierrez, Alejandro P. Gurney-Smith, Helen Hasegawa, Natsuki Boudry, Pierre Hoffman, Joseph Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas) revealed by genome-wide SNP data |
topic_facet |
ddc:590 |
description |
Vendrami D, Houston RD, Gharbi K, et al. Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas) revealed by genome-wide SNP data. Evolutionary Applications . 2018;12(3):1-16. Cultivated bivalves are important not only because of their economic value, but also due to their impacts on natural ecosystems. The Pacific oyster (Crassostrea gigas) is the world's most heavily cultivated shellfish species and has been introduced to all continents except Antarctica for aquaculture. We therefore used a medium‐density single nucleotide polymorphism (SNP) array to investigate the genetic structure of this species in Europe, where it was introduced during the 1960s and has since become a prolific invader of coastal ecosystems across the continent. We analyzed 21,499 polymorphic SNPs in 232 individuals from 23 localities spanning a latitudinal cline from Portugal to Norway and including the source populations of Japan and Canada. We confirmed the results of previous studies by finding clear support for a southern and a northern group, with the former being indistinguishable from the source populations indicating the absence of a pronounced founder effect. We furthermore conducted a large‐scale comparison of oysters sampled from the wild and from hatcheries to reveal substantial genetic differences including significantly higher levels of inbreeding in some but not all of the sampled hatchery cohorts. These findings were confirmed by a smaller but representative SNP dataset generated using restriction site‐associated DNA sequencing. We therefore conclude that genomic approaches can generate increasingly detailed insights into the genetics of wild and hatchery produced Pacific oysters. |
format |
Article in Journal/Newspaper |
author |
Vendrami, David Houston, Ross D. Gharbi, Karim Telesca, Luca Gutierrez, Alejandro P. Gurney-Smith, Helen Hasegawa, Natsuki Boudry, Pierre Hoffman, Joseph |
author_facet |
Vendrami, David Houston, Ross D. Gharbi, Karim Telesca, Luca Gutierrez, Alejandro P. Gurney-Smith, Helen Hasegawa, Natsuki Boudry, Pierre Hoffman, Joseph |
author_sort |
Vendrami, David |
title |
Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas) revealed by genome-wide SNP data |
title_short |
Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas) revealed by genome-wide SNP data |
title_full |
Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas) revealed by genome-wide SNP data |
title_fullStr |
Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas) revealed by genome-wide SNP data |
title_full_unstemmed |
Detailed insights into pan-European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas) revealed by genome-wide SNP data |
title_sort |
detailed insights into pan-european population structure and inbreeding in wild and hatchery pacific oysters (crassostrea gigas) revealed by genome-wide snp data |
publisher |
Wiley |
publishDate |
2018 |
url |
https://nbn-resolving.org/urn:nbn:de:0070-pub-29329115 https://pub.uni-bielefeld.de/record/2932911 https://pub.uni-bielefeld.de/download/2932911/2932912 |
geographic |
Canada Norway Pacific |
geographic_facet |
Canada Norway Pacific |
genre |
Antarc* Antarctica Crassostrea gigas Pacific oyster |
genre_facet |
Antarc* Antarctica Crassostrea gigas Pacific oyster |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1111/eva.12736 info:eu-repo/semantics/altIdentifier/issn/1752-4571 info:eu-repo/semantics/altIdentifier/wos/000459328300012 info:eu-repo/semantics/altIdentifier/pmid/30847007 https://nbn-resolving.org/urn:nbn:de:0070-pub-29329115 https://pub.uni-bielefeld.de/record/2932911 https://pub.uni-bielefeld.de/download/2932911/2932912 |
op_rights |
info:eu-repo/semantics/openAccess https://rightsstatements.org/vocab/InC/1.0/ |
op_doi |
https://doi.org/10.1111/eva.12736 |
container_title |
Evolutionary Applications |
container_volume |
12 |
container_issue |
3 |
container_start_page |
519 |
op_container_end_page |
534 |
_version_ |
1766273018934329344 |