A global viral oceanography database (gVOD)

Virioplankton are a key component of the marine biosphere in maintaining diversity of microorganisms and stabilizing ecosystems. They also contribute greatly to nutrient cycles/cycling by releasing organic matter after lysis of hosts. In this study, we constructed the first global viral oceanography...

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Published in:Earth System Science Data
Main Authors: L. Xie, W. Wei, L. Cai, X. Chen, Y. Huang, N. Jiao, R. Zhang, Y.-W. Luo
Format: Article in Journal/Newspaper
Language:English
Published: Copernicus Publications 2021
Subjects:
geo
Online Access:https://doi.org/10.5194/essd-13-1251-2021
https://essd.copernicus.org/articles/13/1251/2021/essd-13-1251-2021.pdf
https://doaj.org/article/9fe1df88aa564a559ce1d103209d6b05
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spelling fttriple:oai:gotriple.eu:oai:doaj.org/article:9fe1df88aa564a559ce1d103209d6b05 2023-05-15T17:35:02+02:00 A global viral oceanography database (gVOD) L. Xie W. Wei L. Cai X. Chen Y. Huang N. Jiao R. Zhang Y.-W. Luo 2021-03-01 https://doi.org/10.5194/essd-13-1251-2021 https://essd.copernicus.org/articles/13/1251/2021/essd-13-1251-2021.pdf https://doaj.org/article/9fe1df88aa564a559ce1d103209d6b05 en eng Copernicus Publications doi:10.5194/essd-13-1251-2021 1866-3508 1866-3516 https://essd.copernicus.org/articles/13/1251/2021/essd-13-1251-2021.pdf https://doaj.org/article/9fe1df88aa564a559ce1d103209d6b05 undefined Earth System Science Data, Vol 13, Pp 1251-1271 (2021) envir geo Journal Article https://vocabularies.coar-repositories.org/resource_types/c_6501/ 2021 fttriple https://doi.org/10.5194/essd-13-1251-2021 2023-01-22T19:00:02Z Virioplankton are a key component of the marine biosphere in maintaining diversity of microorganisms and stabilizing ecosystems. They also contribute greatly to nutrient cycles/cycling by releasing organic matter after lysis of hosts. In this study, we constructed the first global viral oceanography database (gVOD) by collecting 10 931 viral abundance (VA) data and 727 viral production (VP) data, along with host and relevant oceanographic parameters when available. Most VA data were obtained in the North Atlantic (32 %) and North Pacific (29 %) oceans, while the southeast Pacific and Indian oceans were quite undersampled. The VA in the global ocean was 1.17(±3.31)×107 particles mL−1. The lytic and lysogenic VP in the global ocean was 9.87(±24.16)×105 and 2.53(±8.64)×105 particlesmL-1h-1, respectively. Average VA in coastal oceans was higher than that in surface open oceans (3.61(±6.30)×107 versus 0.73(±1.24)×107 particles mL−1), while average VP in coastal and surface open oceans was close. Vertically, VA, lytic VP and lysogenic VP deceased from surface to deep oceans by about 1 order of magnitude. The total number of viruses in the global ocean estimated by bin-averaging and the random forest method was 1.56×1030 and 1.49×1030 particles, leading to an estimate of global ocean viral biomass at 35.9 and 34.4 Tg C, respectively. We expect that the gVOD will be a fundamental and very useful database for laboratory, field and modeling studies in marine ecology and biogeochemistry. The full gVOD database (Xie et al., 2020) is stored in PANGAEA (https://doi.org/10.1594/PANGAEA.915758). Article in Journal/Newspaper North Atlantic Unknown Indian Pacific Earth System Science Data 13 3 1251 1271
institution Open Polar
collection Unknown
op_collection_id fttriple
language English
topic envir
geo
spellingShingle envir
geo
L. Xie
W. Wei
L. Cai
X. Chen
Y. Huang
N. Jiao
R. Zhang
Y.-W. Luo
A global viral oceanography database (gVOD)
topic_facet envir
geo
description Virioplankton are a key component of the marine biosphere in maintaining diversity of microorganisms and stabilizing ecosystems. They also contribute greatly to nutrient cycles/cycling by releasing organic matter after lysis of hosts. In this study, we constructed the first global viral oceanography database (gVOD) by collecting 10 931 viral abundance (VA) data and 727 viral production (VP) data, along with host and relevant oceanographic parameters when available. Most VA data were obtained in the North Atlantic (32 %) and North Pacific (29 %) oceans, while the southeast Pacific and Indian oceans were quite undersampled. The VA in the global ocean was 1.17(±3.31)×107 particles mL−1. The lytic and lysogenic VP in the global ocean was 9.87(±24.16)×105 and 2.53(±8.64)×105 particlesmL-1h-1, respectively. Average VA in coastal oceans was higher than that in surface open oceans (3.61(±6.30)×107 versus 0.73(±1.24)×107 particles mL−1), while average VP in coastal and surface open oceans was close. Vertically, VA, lytic VP and lysogenic VP deceased from surface to deep oceans by about 1 order of magnitude. The total number of viruses in the global ocean estimated by bin-averaging and the random forest method was 1.56×1030 and 1.49×1030 particles, leading to an estimate of global ocean viral biomass at 35.9 and 34.4 Tg C, respectively. We expect that the gVOD will be a fundamental and very useful database for laboratory, field and modeling studies in marine ecology and biogeochemistry. The full gVOD database (Xie et al., 2020) is stored in PANGAEA (https://doi.org/10.1594/PANGAEA.915758).
format Article in Journal/Newspaper
author L. Xie
W. Wei
L. Cai
X. Chen
Y. Huang
N. Jiao
R. Zhang
Y.-W. Luo
author_facet L. Xie
W. Wei
L. Cai
X. Chen
Y. Huang
N. Jiao
R. Zhang
Y.-W. Luo
author_sort L. Xie
title A global viral oceanography database (gVOD)
title_short A global viral oceanography database (gVOD)
title_full A global viral oceanography database (gVOD)
title_fullStr A global viral oceanography database (gVOD)
title_full_unstemmed A global viral oceanography database (gVOD)
title_sort global viral oceanography database (gvod)
publisher Copernicus Publications
publishDate 2021
url https://doi.org/10.5194/essd-13-1251-2021
https://essd.copernicus.org/articles/13/1251/2021/essd-13-1251-2021.pdf
https://doaj.org/article/9fe1df88aa564a559ce1d103209d6b05
geographic Indian
Pacific
geographic_facet Indian
Pacific
genre North Atlantic
genre_facet North Atlantic
op_source Earth System Science Data, Vol 13, Pp 1251-1271 (2021)
op_relation doi:10.5194/essd-13-1251-2021
1866-3508
1866-3516
https://essd.copernicus.org/articles/13/1251/2021/essd-13-1251-2021.pdf
https://doaj.org/article/9fe1df88aa564a559ce1d103209d6b05
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container_title Earth System Science Data
container_volume 13
container_issue 3
container_start_page 1251
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