Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA
We examined sequence variation of mitochondrial DNA control region and cytochrome b gene of the house mouse (Mus musculus sensu lato) drawn from ca. 200 localities, with 290 new samples drawn primarily from previously unsampled portions of their Eurasian distribution and with the objective of furthe...
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Data Archiving and Networked Services (DANS)
2019
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Online Access: | https://doi.org/10.5061/dryad.rf161 |
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fttriple:oai:gotriple.eu:50|dedup_wf_001::f811c0397d35b6512a22e45da9101893 2023-05-15T18:09:17+02:00 Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA Suzuki, Hitoshi Nunome, Mitsuo Kinotshita, Ghota Aplin, K. P. Vogel, Peter Kryukov, Alexey P. Jin, Mei-Lei Han, Sang-Hoon Maryanto, Ibnu Tsuchiya, Kimiyuki Ikeda, Hidetoshi Shiroishi, T. Yonekawa, Hiromichi Moriwaki, Kazuo 2019-07-15 https://doi.org/10.5061/dryad.rf161 undefined unknown Data Archiving and Networked Services (DANS) http://dx.doi.org/10.5061/dryad.rf161 https://dx.doi.org/10.5061/dryad.rf161 lic_creative-commons oai:easy.dans.knaw.nl:easy-dataset:83650 10.5061/dryad.rf161 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:83650 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c re3data_____::r3d100000044 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 Life sciences medicine and health care Mus musculus house mouse Mitochondrial DNA control region cytochrome b phylogeography Pleistocene Eurasia envir geo Dataset https://vocabularies.coar-repositories.org/resource_types/c_ddb1/ 2019 fttriple https://doi.org/10.5061/dryad.rf161 2023-01-22T17:22:37Z We examined sequence variation of mitochondrial DNA control region and cytochrome b gene of the house mouse (Mus musculus sensu lato) drawn from ca. 200 localities, with 290 new samples drawn primarily from previously unsampled portions of their Eurasian distribution and with the objective of further clarifying evolutionary episodes of this species before and after the onset of human-mediated long-distance dispersals. Phylogenetic analysis of the expanded data detected five equally distinct clades, with geographic ranges of northern Eurasia (musculus, MUS), India and Southeast Asia (castaneus, CAS), Nepal (unspecified), western Europe (domesticus, DOM), and Yemen (gentilulus). Our results confirm previous suggestions of Southwestern Asia as the likely place of origin of M. musculus and the region of Iran, Afghanistan, Pakistan, and northern India, specifically as the ancestral homeland of CAS. The divergence of the subspecies lineages and of internal sublineage differentiation within CAS were estimated to be 0.37-0.47 and 0.14-0.23 million years ago (mya), respectively, assuming a split of M. musculus and Mus spretus at 1.7 mya. Of four CAS sublineages detected, only one extends to eastern parts of India, Southeast Asia, Indonesia, Philippines, South China, Northeast China, Primorye, Sakhalin and Japan, implying a dramatic range expansion of CAS out of its homeland during an evolutionary short time, perhaps associated with the spread of agricultural practices. Multiple and non-coincident eastward dispersal events of MUS sublineages to distant geographic areas, such as northern China, Russia, and Korea, are inferred, with the possibility of several different routes. Appendix 1: Cr, 761 taxaA nexus file having mitochondrial control region sequences from 760 house mice (Mus musculus) and one from outgroup taxon Mus macedonicus being modified for alignment. This nexus file was used to construct maximum likelihood trees and Neighbor-Net networks.Appendix_1_Cr_761taxa.nexAppendix 2: Cytb, 173 taxaA nexus file having ... Dataset Sakhalin Unknown |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
fttriple |
language |
unknown |
topic |
Life sciences medicine and health care Mus musculus house mouse Mitochondrial DNA control region cytochrome b phylogeography Pleistocene Eurasia envir geo |
spellingShingle |
Life sciences medicine and health care Mus musculus house mouse Mitochondrial DNA control region cytochrome b phylogeography Pleistocene Eurasia envir geo Suzuki, Hitoshi Nunome, Mitsuo Kinotshita, Ghota Aplin, K. P. Vogel, Peter Kryukov, Alexey P. Jin, Mei-Lei Han, Sang-Hoon Maryanto, Ibnu Tsuchiya, Kimiyuki Ikeda, Hidetoshi Shiroishi, T. Yonekawa, Hiromichi Moriwaki, Kazuo Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA |
topic_facet |
Life sciences medicine and health care Mus musculus house mouse Mitochondrial DNA control region cytochrome b phylogeography Pleistocene Eurasia envir geo |
description |
We examined sequence variation of mitochondrial DNA control region and cytochrome b gene of the house mouse (Mus musculus sensu lato) drawn from ca. 200 localities, with 290 new samples drawn primarily from previously unsampled portions of their Eurasian distribution and with the objective of further clarifying evolutionary episodes of this species before and after the onset of human-mediated long-distance dispersals. Phylogenetic analysis of the expanded data detected five equally distinct clades, with geographic ranges of northern Eurasia (musculus, MUS), India and Southeast Asia (castaneus, CAS), Nepal (unspecified), western Europe (domesticus, DOM), and Yemen (gentilulus). Our results confirm previous suggestions of Southwestern Asia as the likely place of origin of M. musculus and the region of Iran, Afghanistan, Pakistan, and northern India, specifically as the ancestral homeland of CAS. The divergence of the subspecies lineages and of internal sublineage differentiation within CAS were estimated to be 0.37-0.47 and 0.14-0.23 million years ago (mya), respectively, assuming a split of M. musculus and Mus spretus at 1.7 mya. Of four CAS sublineages detected, only one extends to eastern parts of India, Southeast Asia, Indonesia, Philippines, South China, Northeast China, Primorye, Sakhalin and Japan, implying a dramatic range expansion of CAS out of its homeland during an evolutionary short time, perhaps associated with the spread of agricultural practices. Multiple and non-coincident eastward dispersal events of MUS sublineages to distant geographic areas, such as northern China, Russia, and Korea, are inferred, with the possibility of several different routes. Appendix 1: Cr, 761 taxaA nexus file having mitochondrial control region sequences from 760 house mice (Mus musculus) and one from outgroup taxon Mus macedonicus being modified for alignment. This nexus file was used to construct maximum likelihood trees and Neighbor-Net networks.Appendix_1_Cr_761taxa.nexAppendix 2: Cytb, 173 taxaA nexus file having ... |
format |
Dataset |
author |
Suzuki, Hitoshi Nunome, Mitsuo Kinotshita, Ghota Aplin, K. P. Vogel, Peter Kryukov, Alexey P. Jin, Mei-Lei Han, Sang-Hoon Maryanto, Ibnu Tsuchiya, Kimiyuki Ikeda, Hidetoshi Shiroishi, T. Yonekawa, Hiromichi Moriwaki, Kazuo |
author_facet |
Suzuki, Hitoshi Nunome, Mitsuo Kinotshita, Ghota Aplin, K. P. Vogel, Peter Kryukov, Alexey P. Jin, Mei-Lei Han, Sang-Hoon Maryanto, Ibnu Tsuchiya, Kimiyuki Ikeda, Hidetoshi Shiroishi, T. Yonekawa, Hiromichi Moriwaki, Kazuo |
author_sort |
Suzuki, Hitoshi |
title |
Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA |
title_short |
Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA |
title_full |
Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA |
title_fullStr |
Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA |
title_full_unstemmed |
Data from: Evolutionary and dispersal history of Eurasian wild mice Mus musculus clarified by more extensive geographic sampling of mitochondrial DNA |
title_sort |
data from: evolutionary and dispersal history of eurasian wild mice mus musculus clarified by more extensive geographic sampling of mitochondrial dna |
publisher |
Data Archiving and Networked Services (DANS) |
publishDate |
2019 |
url |
https://doi.org/10.5061/dryad.rf161 |
genre |
Sakhalin |
genre_facet |
Sakhalin |
op_source |
oai:easy.dans.knaw.nl:easy-dataset:83650 10.5061/dryad.rf161 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:83650 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c re3data_____::r3d100000044 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 |
op_relation |
http://dx.doi.org/10.5061/dryad.rf161 https://dx.doi.org/10.5061/dryad.rf161 |
op_rights |
lic_creative-commons |
op_doi |
https://doi.org/10.5061/dryad.rf161 |
_version_ |
1766181774535163904 |