Data from: Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus
Dryad version number: 1 Version status: submitted Dryad curation status: Published Sharing link: https://datadryad.org/stash/share/OBN1oHDEGemSuqSe2o-wQ5gm9NYjmLmbmMeENHFcU38 Storage size: 53795 Visibility: public Usage notes Figure1 R script computing and plotting the equilibrium states for a susce...
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Online Access: | https://doi.org/10.5683/sp2/iiguuy https://doi.org/10.5061/dryad.55t60 https://doi.org/10.14288/1.0397737 |
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fttriple:oai:gotriple.eu:50|dedup_wf_001::edd2d1912ba24a196657af628ef29a0e 2023-05-15T18:05:44+02:00 Data from: Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus Gascuel, Fanny Choisy, Marc Duplantier, Jean-Marc Débarre, Florence Brouat, Carine Federated Research Data Repository Dépôt fédéré de données de recherche 2013-01-01 https://doi.org/10.5683/sp2/iiguuy https://doi.org/10.5061/dryad.55t60 https://doi.org/10.14288/1.0397737 undefined unknown Scholars Portal Dataverse https://dx.doi.org/10.5683/sp2/iiguuy http://dx.doi.org/10.5061/dryad.55t60 https://dx.doi.org/10.5061/dryad.55t60 http://dx.doi.org/10.5683/SP2/IIGUUY https://dx.doi.org/10.14288/1.0397737 lic_creative-commons 10.5683/sp2/iiguuy oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:83385 10.5061/dryad.55t60 oai:dataverse.scholarsportal.info-dataverse-ubc:152409_150149 oai:easy.dans.knaw.nl:easy-dataset:83385 10.14288/1.0397737 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|openaire____::55045bd2a65019fd8e6741a755395c8c 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 re3data_____::r3d100000044 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|openaire____::e783372970a1dc066ce99c673090ff88 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c Life sciences medicine and health care Xenopsylla cheopis Host resistance Synopsyllus fonquerniei metapopulation structure disease persistence Rattus rattus plague Madagascar Other envir socio Dataset https://vocabularies.coar-repositories.org/resource_types/c_ddb1/ 2013 fttriple https://doi.org/10.5683/sp2/iiguuy https://doi.org/10.5061/dryad.55t60 https://doi.org/10.5683/SP2/IIGUUY https://doi.org/10.14288/1.0397737 2023-01-22T16:53:24Z Dryad version number: 1 Version status: submitted Dryad curation status: Published Sharing link: https://datadryad.org/stash/share/OBN1oHDEGemSuqSe2o-wQ5gm9NYjmLmbmMeENHFcU38 Storage size: 53795 Visibility: public Usage notes Figure1 R script computing and plotting the equilibrium states for a susceptible population, according to the rat's maximal birth rate, r, and the transmission rate, beta. (a) K = 25,000 rats, (b) K = 1,000 rats. figure1.r Figure 1 - system dynamics System dynamics (in C language) used in figure1.r (system (S1.1) in the supporting text S1 of the article). si_fig1.c Figure 2 R script computing and plotting the equilibrium states for a rat population including resistant rats, according to the maximal birth rate of rats, r, and the transmission rate, beta. K = 25,000 rats. figure2.r Figure 2 - system dynamics System dynamics (in C language) used in figure2.r (system (1) in the main text of the article). sir_fig2.c Figure 3 R script computing the equilibrium states for a susceptible host metapopulation composed of (a) 2 subpopulations, (b) 4 subpopulations and (c) 25 subpopulations (deterministic analysis). Total carrying capacity = 25,000 rats. figure3.r Figure 3 (a) - system dynamics with 2 subpopulations System dynamics (in C language) used in figure3.r to compute the equilibrium states of a host structured susceptible population composed of 2 subpopulations. sir2P_fig3a.c Figure 3 (b) - system dynamics with 4 subpopulations System dynamics (in C language) used in figure3.r to compute the equilibrium states of a host structured susceptible population composed of 4 subpopulations. sir4P_fig3b.c Figure 3 (c) - system dynamics with 25 subpopulations System dynamics (in C language) used in figure3.r to compute the equilibrium states of a host structured susceptible population composed of 25 subpopulations. sir25P_fig3c.c Figure 4 (a) R script computing and plotting the estimated probability of persistence of susceptible rats S and infectious rats I through time, in a non structured population of ... Dataset Rattus rattus Unknown |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
fttriple |
language |
unknown |
topic |
Life sciences medicine and health care Xenopsylla cheopis Host resistance Synopsyllus fonquerniei metapopulation structure disease persistence Rattus rattus plague Madagascar Other envir socio |
spellingShingle |
Life sciences medicine and health care Xenopsylla cheopis Host resistance Synopsyllus fonquerniei metapopulation structure disease persistence Rattus rattus plague Madagascar Other envir socio Gascuel, Fanny Choisy, Marc Duplantier, Jean-Marc Débarre, Florence Brouat, Carine Data from: Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus |
topic_facet |
Life sciences medicine and health care Xenopsylla cheopis Host resistance Synopsyllus fonquerniei metapopulation structure disease persistence Rattus rattus plague Madagascar Other envir socio |
description |
Dryad version number: 1 Version status: submitted Dryad curation status: Published Sharing link: https://datadryad.org/stash/share/OBN1oHDEGemSuqSe2o-wQ5gm9NYjmLmbmMeENHFcU38 Storage size: 53795 Visibility: public Usage notes Figure1 R script computing and plotting the equilibrium states for a susceptible population, according to the rat's maximal birth rate, r, and the transmission rate, beta. (a) K = 25,000 rats, (b) K = 1,000 rats. figure1.r Figure 1 - system dynamics System dynamics (in C language) used in figure1.r (system (S1.1) in the supporting text S1 of the article). si_fig1.c Figure 2 R script computing and plotting the equilibrium states for a rat population including resistant rats, according to the maximal birth rate of rats, r, and the transmission rate, beta. K = 25,000 rats. figure2.r Figure 2 - system dynamics System dynamics (in C language) used in figure2.r (system (1) in the main text of the article). sir_fig2.c Figure 3 R script computing the equilibrium states for a susceptible host metapopulation composed of (a) 2 subpopulations, (b) 4 subpopulations and (c) 25 subpopulations (deterministic analysis). Total carrying capacity = 25,000 rats. figure3.r Figure 3 (a) - system dynamics with 2 subpopulations System dynamics (in C language) used in figure3.r to compute the equilibrium states of a host structured susceptible population composed of 2 subpopulations. sir2P_fig3a.c Figure 3 (b) - system dynamics with 4 subpopulations System dynamics (in C language) used in figure3.r to compute the equilibrium states of a host structured susceptible population composed of 4 subpopulations. sir4P_fig3b.c Figure 3 (c) - system dynamics with 25 subpopulations System dynamics (in C language) used in figure3.r to compute the equilibrium states of a host structured susceptible population composed of 25 subpopulations. sir25P_fig3c.c Figure 4 (a) R script computing and plotting the estimated probability of persistence of susceptible rats S and infectious rats I through time, in a non structured population of ... |
author2 |
Federated Research Data Repository Dépôt fédéré de données de recherche |
format |
Dataset |
author |
Gascuel, Fanny Choisy, Marc Duplantier, Jean-Marc Débarre, Florence Brouat, Carine |
author_facet |
Gascuel, Fanny Choisy, Marc Duplantier, Jean-Marc Débarre, Florence Brouat, Carine |
author_sort |
Gascuel, Fanny |
title |
Data from: Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus |
title_short |
Data from: Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus |
title_full |
Data from: Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus |
title_fullStr |
Data from: Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus |
title_full_unstemmed |
Data from: Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus |
title_sort |
data from: host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the malagasy focus |
publisher |
Scholars Portal Dataverse |
publishDate |
2013 |
url |
https://doi.org/10.5683/sp2/iiguuy https://doi.org/10.5061/dryad.55t60 https://doi.org/10.14288/1.0397737 |
genre |
Rattus rattus |
genre_facet |
Rattus rattus |
op_source |
10.5683/sp2/iiguuy oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:83385 10.5061/dryad.55t60 oai:dataverse.scholarsportal.info-dataverse-ubc:152409_150149 oai:easy.dans.knaw.nl:easy-dataset:83385 10.14288/1.0397737 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|openaire____::55045bd2a65019fd8e6741a755395c8c 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 re3data_____::r3d100000044 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|openaire____::e783372970a1dc066ce99c673090ff88 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c |
op_relation |
https://dx.doi.org/10.5683/sp2/iiguuy http://dx.doi.org/10.5061/dryad.55t60 https://dx.doi.org/10.5061/dryad.55t60 http://dx.doi.org/10.5683/SP2/IIGUUY https://dx.doi.org/10.14288/1.0397737 |
op_rights |
lic_creative-commons |
op_doi |
https://doi.org/10.5683/sp2/iiguuy https://doi.org/10.5061/dryad.55t60 https://doi.org/10.5683/SP2/IIGUUY https://doi.org/10.14288/1.0397737 |
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1766177236361150464 |