"Y-Chromosome Markers for the Red Fox"
The de novo assembly of the red fox (Vulpes vulpes) genome has facilitated the development of genomic tools for the species. Efforts to identify the population history of red foxes in North America have previously been limited by a lack of information about the red fox Y-chromosome sequence. However...
Published in: | Journal of Heredity |
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Main Authors: | , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | unknown |
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Oxford University Press (OUP)
2017
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Online Access: | http://academic.oup.com/jhered/article-pdf/108/6/678/19514536/esx066.pdf https://academic.oup.com/jhered/article-pdf/108/6/678/24368684/esx066.pdf https://doi.org/10.1093/jhered/esx066 https://europepmc.org/articles/PMC5892395/ https://academic.oup.com/jhered/article/108/6/678/4082523 https://pubmed.ncbi.nlm.nih.gov/28821189/ https://www.ncbi.nlm.nih.gov/pubmed/28821189 https://experts.illinois.edu/en/publications/y-chromosome-markers-for-the-red-fox https://ucdavis.pure.elsevier.com/en/publications/y-chromosome-markers-for-the-red-fox https://academic.microsoft.com/#/detail/2747427158 |
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Brief Communications Biotechnology Genetics(clinical) Genetics Molecular Biology litt archeo Benjamin N. Sacks Jeremy T. Stutchman Carlos A. Driscoll Jennifer L. Johnson Lyudmila N. Trut Estelle R. Bastounes Anna V. Kukekova Halie M. Rando Christina S. Barr "Y-Chromosome Markers for the Red Fox" |
topic_facet |
Brief Communications Biotechnology Genetics(clinical) Genetics Molecular Biology litt archeo |
description |
The de novo assembly of the red fox (Vulpes vulpes) genome has facilitated the development of genomic tools for the species. Efforts to identify the population history of red foxes in North America have previously been limited by a lack of information about the red fox Y-chromosome sequence. However, a megabase of red fox Y-chromosome sequence was recently identified over 2 scaffolds in the reference genome. Here, these scaffolds were scanned for repeated motifs, revealing 194 likely microsatellites. Twenty-three of these loci were selected for primer development and, after testing, produced a panel of 11 novel markers that were analyzed alongside 2 markers previously developed for the red fox from dog Y-chromosome sequence. The markers were genotyped in 76 male red foxes from 4 populations: 7 foxes from Newfoundland (eastern Canada), 12 from Maryland (eastern United States), and 9 from the island of Great Britain, as well as 48 foxes of known North American origin maintained on an experimental farm in Novosibirsk, Russia. The full marker panel revealed 22 haplotypes among these red foxes, whereas the 2 previously known markers alone would have identified only 10 haplotypes. The haplotypes from the 4 populations clustered primarily by continent, but unidirectional gene flow from Great Britain and farm populations may influence haplotype diversity in the Maryland population. The development of new markers has increased the resolution at which red fox Y-chromosome diversity can be analyzed and provides insight into the contribution of males to red fox population diversity and patterns of phylogeography. |
format |
Article in Journal/Newspaper |
author |
Benjamin N. Sacks Jeremy T. Stutchman Carlos A. Driscoll Jennifer L. Johnson Lyudmila N. Trut Estelle R. Bastounes Anna V. Kukekova Halie M. Rando Christina S. Barr |
author_facet |
Benjamin N. Sacks Jeremy T. Stutchman Carlos A. Driscoll Jennifer L. Johnson Lyudmila N. Trut Estelle R. Bastounes Anna V. Kukekova Halie M. Rando Christina S. Barr |
author_sort |
Benjamin N. Sacks |
title |
"Y-Chromosome Markers for the Red Fox" |
title_short |
"Y-Chromosome Markers for the Red Fox" |
title_full |
"Y-Chromosome Markers for the Red Fox" |
title_fullStr |
"Y-Chromosome Markers for the Red Fox" |
title_full_unstemmed |
"Y-Chromosome Markers for the Red Fox" |
title_sort |
"y-chromosome markers for the red fox" |
publisher |
Oxford University Press (OUP) |
publishDate |
2017 |
url |
http://academic.oup.com/jhered/article-pdf/108/6/678/19514536/esx066.pdf https://academic.oup.com/jhered/article-pdf/108/6/678/24368684/esx066.pdf https://doi.org/10.1093/jhered/esx066 https://europepmc.org/articles/PMC5892395/ https://academic.oup.com/jhered/article/108/6/678/4082523 https://pubmed.ncbi.nlm.nih.gov/28821189/ https://www.ncbi.nlm.nih.gov/pubmed/28821189 https://experts.illinois.edu/en/publications/y-chromosome-markers-for-the-red-fox https://ucdavis.pure.elsevier.com/en/publications/y-chromosome-markers-for-the-red-fox https://academic.microsoft.com/#/detail/2747427158 |
geographic |
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Canada |
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Newfoundland |
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Newfoundland |
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10.1093/jhered/esx066 28821189 oai:pubmedcentral.nih.gov:5892395 2747427158 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 openaire____::1256f046-bf1f-4afc-8b47-d0b147148b18 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|openaire____::55045bd2a65019fd8e6741a755395c8c 10|opendoar____::eda80a3d5b344bc40f3bc04f65b7a357 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c 10|issn___print::662bd97507eb11635097f6fd0f439ea2 10|openaire____::8ac8380272269217cb09a928c8caa993 10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a 10|openaire____::806360c771262b4d6770e7cdf04b5c5a |
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Journal of Heredity |
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fttriple:oai:gotriple.eu:50|dedup_wf_001::e95bdc917a4568b5dbcbd6ab37872b5b 2023-05-15T17:22:39+02:00 "Y-Chromosome Markers for the Red Fox" Benjamin N. Sacks Jeremy T. Stutchman Carlos A. Driscoll Jennifer L. Johnson Lyudmila N. Trut Estelle R. Bastounes Anna V. Kukekova Halie M. Rando Christina S. Barr 2017-08-14 http://academic.oup.com/jhered/article-pdf/108/6/678/19514536/esx066.pdf https://academic.oup.com/jhered/article-pdf/108/6/678/24368684/esx066.pdf https://doi.org/10.1093/jhered/esx066 https://europepmc.org/articles/PMC5892395/ https://academic.oup.com/jhered/article/108/6/678/4082523 https://pubmed.ncbi.nlm.nih.gov/28821189/ https://www.ncbi.nlm.nih.gov/pubmed/28821189 https://experts.illinois.edu/en/publications/y-chromosome-markers-for-the-red-fox https://ucdavis.pure.elsevier.com/en/publications/y-chromosome-markers-for-the-red-fox https://academic.microsoft.com/#/detail/2747427158 undefined unknown Oxford University Press (OUP) http://academic.oup.com/jhered/article-pdf/108/6/678/19514536/esx066.pdf https://academic.oup.com/jhered/article-pdf/108/6/678/24368684/esx066.pdf https://dx.doi.org/10.1093/jhered/esx066 http://dx.doi.org/10.1093/jhered/esx066 https://europepmc.org/articles/PMC5892395/ https://academic.oup.com/jhered/article/108/6/678/4082523 https://pubmed.ncbi.nlm.nih.gov/28821189/ https://www.ncbi.nlm.nih.gov/pubmed/28821189 https://experts.illinois.edu/en/publications/y-chromosome-markers-for-the-red-fox https://ucdavis.pure.elsevier.com/en/publications/y-chromosome-markers-for-the-red-fox https://academic.microsoft.com/#/detail/2747427158 undefined 10.1093/jhered/esx066 28821189 oai:pubmedcentral.nih.gov:5892395 2747427158 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 openaire____::1256f046-bf1f-4afc-8b47-d0b147148b18 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|openaire____::55045bd2a65019fd8e6741a755395c8c 10|opendoar____::eda80a3d5b344bc40f3bc04f65b7a357 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c 10|issn___print::662bd97507eb11635097f6fd0f439ea2 10|openaire____::8ac8380272269217cb09a928c8caa993 10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a 10|openaire____::806360c771262b4d6770e7cdf04b5c5a Brief Communications Biotechnology Genetics(clinical) Genetics Molecular Biology litt archeo Journal Article https://vocabularies.coar-repositories.org/resource_types/c_6501/ 2017 fttriple https://doi.org/10.1093/jhered/esx066 2023-01-22T17:13:37Z The de novo assembly of the red fox (Vulpes vulpes) genome has facilitated the development of genomic tools for the species. Efforts to identify the population history of red foxes in North America have previously been limited by a lack of information about the red fox Y-chromosome sequence. However, a megabase of red fox Y-chromosome sequence was recently identified over 2 scaffolds in the reference genome. Here, these scaffolds were scanned for repeated motifs, revealing 194 likely microsatellites. Twenty-three of these loci were selected for primer development and, after testing, produced a panel of 11 novel markers that were analyzed alongside 2 markers previously developed for the red fox from dog Y-chromosome sequence. The markers were genotyped in 76 male red foxes from 4 populations: 7 foxes from Newfoundland (eastern Canada), 12 from Maryland (eastern United States), and 9 from the island of Great Britain, as well as 48 foxes of known North American origin maintained on an experimental farm in Novosibirsk, Russia. The full marker panel revealed 22 haplotypes among these red foxes, whereas the 2 previously known markers alone would have identified only 10 haplotypes. The haplotypes from the 4 populations clustered primarily by continent, but unidirectional gene flow from Great Britain and farm populations may influence haplotype diversity in the Maryland population. The development of new markers has increased the resolution at which red fox Y-chromosome diversity can be analyzed and provides insight into the contribution of males to red fox population diversity and patterns of phylogeography. Article in Journal/Newspaper Newfoundland Unknown Canada Journal of Heredity 108 6 678 685 |