Data from: Origins and functional diversification of salinity-responsive Na+, K+ ATPase α1 paralogs in salmonids

• Main Authors: Dalziel, Anne C., Bittman, Jesse, Mandic, Milica, Ou, Michelle, Schulte, Patricia M.
• Other Authors: Federated Research Data Repository, Dépôt fédéré de données de recherche
• Format: Dataset
• Language: unknown
• Published: 2014
• Subjects: Life sciences; medicine and health care; Osmerus mordax; sodium potassium ATPase; Salmo salar; Coregonus clupeaformis; molecular evolution; Fish; Esox lucius; Oncorhynchus mykiss; Salvelinus alpinus; Thymallus arcticus; Gene Structure and Function; Adaptation; Other; stat; envir; Northern pike
• Online Access: https://doi.org/10.5061/dryad.5c6v7; https://doi.org/10.5683/sp2/fr2jix; https://doi.org/10.14288/1.0397690

Dryad version number: 1 Version status: submitted Dryad curation status: Published Sharing link: https://datadryad.org/stash/share/0Ls1klDRirqESEc_TFuRAE4lHN78OpUGiqgMb519mM4 Storage size: 237083 Visibility: public Usage notes Key for Figure 2 Accession numbers for all sequences used in Figure 2 and the short name used in sequence files for PAML and alignments (Appendix S1). Fig2_SequenceIDs_to_GenbankNumbers.txt Fig4- Pike real time data Gene expression of Na+, K+ ATPase paralogs and 18S in the Northern Pike (Esox lucius) Fig4_Pike real time datal.xls Supplementary Fig1 Teleost Na+, K+ ATPase α1 (ATP1A1) gene tree reconstructed using Bayesian inference (BI) with MrBayes version 3.2.1 (Ronquist et al. 2012) and the GTR+I+Γ model of nucleotide evolution. SuppFig1_MrBayes_Jan_7_2013.rtf Supplementary Figure 2 Teleost Na+, K+ ATPase α1 (ATP1A1) gene tree reconstructed using the maximum likelihood (ML) method with RAxML software version 7.2.7 (Stamatakis 2006) and the GTR+Γ model of nucleotide evolution. SuppFig2_RAxML_Dec_30.rtf Tree file for PAML Tree file to be used with the one and free ratios models in PAML (Table 1, Test 1a). ATP1A1.trees Control file for PAML - Branch Model Control file for PAML branch model to test for selection along Branch D of Fig.2 (Table 1). BranchModel_BranchD.ctl Tree file for PAML - 2 Tree file for PAML's Branch-Site Model A (testing for selection along Branch D of Fig.2. Table 3) BranchModel_BranchD.trees Control file for PAML - Branch Null Model Control file for the null PAML Branch Model testing for selection along Branch D in Figure 2 (Table 1). BranchModel_BranchDnull.ctl Control file for PAML - Branch-Sites Model Control file for PAML`to run Branch-sites Model A along branch D in Figure 2 (Table 3). BranchSite_BranchD.ctl Tree file for PAML - 3 Tree file for PAML's Branch-Site Model A, testing for selection in sites along Branch D in Figure 2 (Table 3). BranchSite_BranchD.trees Control file for PAML Branch-Site Null Model Control file for PAML's null Branch-site Model A testing ...