Data from: How old are you? Genet age estimates in a clonal animal
Foundation species such as redwoods, seagrasses and corals are often long-lived and clonal. Genets may consist of hundreds of members (ramets) and originated hundreds to thousands of years ago. As climate change and other stressors exert selection pressure on species, the demography of populations c...
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Dryad Digital Repository
2022
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Online Access: | https://doi.org/10.5061/dryad.f6600.2 https://doi.org/10.5061/dryad.f6600.1 https://doi.org/10.5061/dryad.f6600 |
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fttriple:oai:gotriple.eu:50|dedup_wf_001::d619ca7fef2346b208897ce6692c54ea 2023-05-15T17:40:22+02:00 Data from: How old are you? Genet age estimates in a clonal animal Devlin-Durante, Meghann K. Miller, Margaret W. Group, Caribbean Acropora Research Precht, William F. Baums, Iliana B. Devlin-Durante, M. K. Baums, I. B. Miller, M. W. 2022-07-05 https://doi.org/10.5061/dryad.f6600.2 https://doi.org/10.5061/dryad.f6600.1 https://doi.org/10.5061/dryad.f6600 undefined unknown Dryad Digital Repository http://dx.doi.org/10.5061/dryad.f6600.2 https://dx.doi.org/10.5061/dryad.f6600.2 http://dx.doi.org/10.5061/dryad.f6600.1 https://dx.doi.org/10.5061/dryad.f6600.1 https://dx.doi.org/10.5061/dryad.f6600 http://dx.doi.org/10.5061/dryad.f6600 lic_creative-commons 10.5061/dryad.f6600.2 10.5061/dryad.f6600.1 oai:easy.dans.knaw.nl:easy-dataset:118520 10.5061/dryad.f6600 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:118520 oai:easy.dans.knaw.nl:easy-dataset:99650 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:99650 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 re3data_____::r3d100000044 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 Somatic mutations microsatellite Longevity Clonal Population Dynamics Caribbean North-West Atlantic Holocene Acropora palmata Life sciences medicine and health care envir psy Dataset https://vocabularies.coar-repositories.org/resource_types/c_ddb1/ 2022 fttriple https://doi.org/10.5061/dryad.f6600.2 https://doi.org/10.5061/dryad.f6600.1 https://doi.org/10.5061/dryad.f6600 2023-01-22T16:41:02Z Foundation species such as redwoods, seagrasses and corals are often long-lived and clonal. Genets may consist of hundreds of members (ramets) and originated hundreds to thousands of years ago. As climate change and other stressors exert selection pressure on species, the demography of populations changes. Yet, because size does not indicate age in clonal organisms, demographic models are missing data necessary to predict the resilience of many foundation species. Here, we correlate somatic mutations with genet age of corals and provide the first, preliminary estimates of genet age in a colonial animal. We observed somatic mutations at five microsatellite loci in rangewide samples of the endangered coral, Acropora palmata (n = 3352). Colonies harboured 342 unique mutations in 147 genets. Genet age ranged from 30 to 838 years assuming a mutation rate of 1.195−04 per locus per year based on colony growth rates and 236 to 6500 years assuming a mutation rate of 1.542−05 per locus per year based on sea level changes to habitat availability. Long-lived A. palmata genets imply a large capacity to tolerate past environmental change, and yet recent mass mortality events in A. palmata suggest that capacity is now being frequently exceeded. DuranteEtAl_Apalmta_Genotypes_n=3352Genotypes for the coral, Acropora palmata from five microsatellite loci. A. palmata is a diploid species, however, somatic mutations in the form of third and fourth alleles per locus are occasionally detected. Samples are in rows (n = 3352), genotypes are in columns. Table Headers Species: Acropora palmata Region: Caribbean and North-west Atlantic. Database ID: A unique name given to each coral sample. Locus 166, alleles 1-4: Locus 166 is a microsatellite locus. Alleles are given in basepairs. Locus 181, alleles 1-3: Locus 181 is a microsatellite locus. Alleles are given in basepairs. Locus 182, alleles 1-4: Locus 182 is a microsatellite locus. Alleles are given in basepairs. Locus 192, alleles 1-4: Locus 192 is a microsatellite locus. Alleles are ... Dataset North West Atlantic Unknown |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
fttriple |
language |
unknown |
topic |
Somatic mutations microsatellite Longevity Clonal Population Dynamics Caribbean North-West Atlantic Holocene Acropora palmata Life sciences medicine and health care envir psy |
spellingShingle |
Somatic mutations microsatellite Longevity Clonal Population Dynamics Caribbean North-West Atlantic Holocene Acropora palmata Life sciences medicine and health care envir psy Devlin-Durante, Meghann K. Miller, Margaret W. Group, Caribbean Acropora Research Precht, William F. Baums, Iliana B. Devlin-Durante, M. K. Baums, I. B. Miller, M. W. Data from: How old are you? Genet age estimates in a clonal animal |
topic_facet |
Somatic mutations microsatellite Longevity Clonal Population Dynamics Caribbean North-West Atlantic Holocene Acropora palmata Life sciences medicine and health care envir psy |
description |
Foundation species such as redwoods, seagrasses and corals are often long-lived and clonal. Genets may consist of hundreds of members (ramets) and originated hundreds to thousands of years ago. As climate change and other stressors exert selection pressure on species, the demography of populations changes. Yet, because size does not indicate age in clonal organisms, demographic models are missing data necessary to predict the resilience of many foundation species. Here, we correlate somatic mutations with genet age of corals and provide the first, preliminary estimates of genet age in a colonial animal. We observed somatic mutations at five microsatellite loci in rangewide samples of the endangered coral, Acropora palmata (n = 3352). Colonies harboured 342 unique mutations in 147 genets. Genet age ranged from 30 to 838 years assuming a mutation rate of 1.195−04 per locus per year based on colony growth rates and 236 to 6500 years assuming a mutation rate of 1.542−05 per locus per year based on sea level changes to habitat availability. Long-lived A. palmata genets imply a large capacity to tolerate past environmental change, and yet recent mass mortality events in A. palmata suggest that capacity is now being frequently exceeded. DuranteEtAl_Apalmta_Genotypes_n=3352Genotypes for the coral, Acropora palmata from five microsatellite loci. A. palmata is a diploid species, however, somatic mutations in the form of third and fourth alleles per locus are occasionally detected. Samples are in rows (n = 3352), genotypes are in columns. Table Headers Species: Acropora palmata Region: Caribbean and North-west Atlantic. Database ID: A unique name given to each coral sample. Locus 166, alleles 1-4: Locus 166 is a microsatellite locus. Alleles are given in basepairs. Locus 181, alleles 1-3: Locus 181 is a microsatellite locus. Alleles are given in basepairs. Locus 182, alleles 1-4: Locus 182 is a microsatellite locus. Alleles are given in basepairs. Locus 192, alleles 1-4: Locus 192 is a microsatellite locus. Alleles are ... |
format |
Dataset |
author |
Devlin-Durante, Meghann K. Miller, Margaret W. Group, Caribbean Acropora Research Precht, William F. Baums, Iliana B. Devlin-Durante, M. K. Baums, I. B. Miller, M. W. |
author_facet |
Devlin-Durante, Meghann K. Miller, Margaret W. Group, Caribbean Acropora Research Precht, William F. Baums, Iliana B. Devlin-Durante, M. K. Baums, I. B. Miller, M. W. |
author_sort |
Devlin-Durante, Meghann K. |
title |
Data from: How old are you? Genet age estimates in a clonal animal |
title_short |
Data from: How old are you? Genet age estimates in a clonal animal |
title_full |
Data from: How old are you? Genet age estimates in a clonal animal |
title_fullStr |
Data from: How old are you? Genet age estimates in a clonal animal |
title_full_unstemmed |
Data from: How old are you? Genet age estimates in a clonal animal |
title_sort |
data from: how old are you? genet age estimates in a clonal animal |
publisher |
Dryad Digital Repository |
publishDate |
2022 |
url |
https://doi.org/10.5061/dryad.f6600.2 https://doi.org/10.5061/dryad.f6600.1 https://doi.org/10.5061/dryad.f6600 |
genre |
North West Atlantic |
genre_facet |
North West Atlantic |
op_source |
10.5061/dryad.f6600.2 10.5061/dryad.f6600.1 oai:easy.dans.knaw.nl:easy-dataset:118520 10.5061/dryad.f6600 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:118520 oai:easy.dans.knaw.nl:easy-dataset:99650 oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:99650 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 re3data_____::r3d100000044 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 |
op_relation |
http://dx.doi.org/10.5061/dryad.f6600.2 https://dx.doi.org/10.5061/dryad.f6600.2 http://dx.doi.org/10.5061/dryad.f6600.1 https://dx.doi.org/10.5061/dryad.f6600.1 https://dx.doi.org/10.5061/dryad.f6600 http://dx.doi.org/10.5061/dryad.f6600 |
op_rights |
lic_creative-commons |
op_doi |
https://doi.org/10.5061/dryad.f6600.2 https://doi.org/10.5061/dryad.f6600.1 https://doi.org/10.5061/dryad.f6600 |
_version_ |
1766141269795405824 |