Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types

1. New methods for species distribution models (SDMs) utilise presence‐absence (PA) data to correct the sampling bias of presence‐only (PO) data in a spatial point process setting. These have been shown to improve species estimates when both data sets are large and dense. However, is a PA data set t...

Full description

Bibliographic Details
Main Authors: Peel, Samantha L., Hill, Nicole A., Foster, Scott D., Wotherspoon, Simon J., Ghiglione, Claudio, Schiaparelli, Stefano
Format: Dataset
Language:unknown
Published: 2019
Subjects:
geo
Online Access:https://doi.org/10.5061/dryad.2226v8m
id fttriple:oai:gotriple.eu:50|dedup_wf_001::d1f42e1ba0bf230af251bb9e21244b9c
record_format openpolar
spelling fttriple:oai:gotriple.eu:50|dedup_wf_001::d1f42e1ba0bf230af251bb9e21244b9c 2023-05-15T18:25:57+02:00 Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types Peel, Samantha L. Hill, Nicole A. Foster, Scott D. Wotherspoon, Simon J. Ghiglione, Claudio Schiaparelli, Stefano 2019-11-15 https://doi.org/10.5061/dryad.2226v8m undefined unknown http://dx.doi.org/10.5061/dryad.2226v8m https://dx.doi.org/10.5061/dryad.2226v8m lic_creative-commons oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:128656 oai:easy.dans.knaw.nl:easy-dataset:128656 10.5061/dryad.2226v8m 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 re3data_____::r3d100000044 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f Life sciences medicine and health care Southern Ocean Mollusca Species distribution models presence‐absence data sampling bias stochastic simulation presence‐only data Poisson point processes envir geo Dataset https://vocabularies.coar-repositories.org/resource_types/c_ddb1/ 2019 fttriple https://doi.org/10.5061/dryad.2226v8m 2023-01-22T16:51:48Z 1. New methods for species distribution models (SDMs) utilise presence‐absence (PA) data to correct the sampling bias of presence‐only (PO) data in a spatial point process setting. These have been shown to improve species estimates when both data sets are large and dense. However, is a PA data set that is smaller and patchier than hitherto examined able to do the same? Furthermore, when both data sets are relatively small, is there enough information contained within them to produce a useful estimate of species’ distributions? These attributes are common in many applications. 2. A stochastic simulation was conducted to assess the ability of a pooled data SDM to estimate the distribution of species from increasingly sparser and patchier data sets. The simulated data sets were varied by changing the number of presence‐absence sample locations, the degree of patchiness of these locations, the number of PO observations, and the level of sampling bias within the PO observations. The performance of the pooled data SDM was compared to a PA SDM and a PO SDM to assess the strengths and limitations of each SDM. 3. The pooled data SDM successfully removed the sampling bias from the PO observations even when the presence‐absence data was sparse and patchy, and the PO observations formed the majority of the data. The pooled data SDM was, in general, more accurate and more precise than either the PA SDM or the PO SDM. All SDMs were more precise for the species responses than they were for the covariate coefficients. 4. The emerging SDM methodology that pools PO and PA data will facilitate more certainty around species’ distribution estimates, which in turn will allow more relevant and concise management and policy decisions to be enacted. This work shows that it is possible to achieve this result even in relatively data‐poor regions. Species ListSpecies list for Dryad.csv Dataset Southern Ocean Unknown Southern Ocean
institution Open Polar
collection Unknown
op_collection_id fttriple
language unknown
topic Life sciences
medicine and health care
Southern Ocean Mollusca
Species distribution models
presence‐absence data
sampling bias
stochastic simulation
presence‐only data
Poisson point processes
envir
geo
spellingShingle Life sciences
medicine and health care
Southern Ocean Mollusca
Species distribution models
presence‐absence data
sampling bias
stochastic simulation
presence‐only data
Poisson point processes
envir
geo
Peel, Samantha L.
Hill, Nicole A.
Foster, Scott D.
Wotherspoon, Simon J.
Ghiglione, Claudio
Schiaparelli, Stefano
Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types
topic_facet Life sciences
medicine and health care
Southern Ocean Mollusca
Species distribution models
presence‐absence data
sampling bias
stochastic simulation
presence‐only data
Poisson point processes
envir
geo
description 1. New methods for species distribution models (SDMs) utilise presence‐absence (PA) data to correct the sampling bias of presence‐only (PO) data in a spatial point process setting. These have been shown to improve species estimates when both data sets are large and dense. However, is a PA data set that is smaller and patchier than hitherto examined able to do the same? Furthermore, when both data sets are relatively small, is there enough information contained within them to produce a useful estimate of species’ distributions? These attributes are common in many applications. 2. A stochastic simulation was conducted to assess the ability of a pooled data SDM to estimate the distribution of species from increasingly sparser and patchier data sets. The simulated data sets were varied by changing the number of presence‐absence sample locations, the degree of patchiness of these locations, the number of PO observations, and the level of sampling bias within the PO observations. The performance of the pooled data SDM was compared to a PA SDM and a PO SDM to assess the strengths and limitations of each SDM. 3. The pooled data SDM successfully removed the sampling bias from the PO observations even when the presence‐absence data was sparse and patchy, and the PO observations formed the majority of the data. The pooled data SDM was, in general, more accurate and more precise than either the PA SDM or the PO SDM. All SDMs were more precise for the species responses than they were for the covariate coefficients. 4. The emerging SDM methodology that pools PO and PA data will facilitate more certainty around species’ distribution estimates, which in turn will allow more relevant and concise management and policy decisions to be enacted. This work shows that it is possible to achieve this result even in relatively data‐poor regions. Species ListSpecies list for Dryad.csv
format Dataset
author Peel, Samantha L.
Hill, Nicole A.
Foster, Scott D.
Wotherspoon, Simon J.
Ghiglione, Claudio
Schiaparelli, Stefano
author_facet Peel, Samantha L.
Hill, Nicole A.
Foster, Scott D.
Wotherspoon, Simon J.
Ghiglione, Claudio
Schiaparelli, Stefano
author_sort Peel, Samantha L.
title Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types
title_short Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types
title_full Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types
title_fullStr Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types
title_full_unstemmed Data from: Reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types
title_sort data from: reliable species distributions are obtainable with sparse, patchy and biased data by leveraging over species and data types
publishDate 2019
url https://doi.org/10.5061/dryad.2226v8m
geographic Southern Ocean
geographic_facet Southern Ocean
genre Southern Ocean
genre_facet Southern Ocean
op_source oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:128656
oai:easy.dans.knaw.nl:easy-dataset:128656
10.5061/dryad.2226v8m
10|eurocrisdris::fe4903425d9040f680d8610d9079ea14
10|re3data_____::84e123776089ce3c7a33db98d9cd15a8
10|openaire____::9e3be59865b2c1c335d32dae2fe7b254
re3data_____::r3d100000044
10|re3data_____::94816e6421eeb072e7742ce6a9decc5f
op_relation http://dx.doi.org/10.5061/dryad.2226v8m
https://dx.doi.org/10.5061/dryad.2226v8m
op_rights lic_creative-commons
op_doi https://doi.org/10.5061/dryad.2226v8m
_version_ 1766207695949398016