Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015
This article documents the public availability of raw transcriptome sequence data and assembled contigs of the Antarctic plant Colobanthus quitensis grown in two different climatic conditions. BLAST hits are also provided. SRX814890Sequence files of Colobanthus quitensis transcriptome grown in two d...
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fttriple:oai:gotriple.eu:50|dedup_wf_001::a398f977866020245daf060a86deaded 2023-05-15T13:56:10+02:00 Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015 Bertini, Laura Proietti, Silvia Caruso, Carla 2015-01-01 https://doi.org/10.5061/dryad.jp1mk undefined unknown http://dx.doi.org/10.5061/dryad.jp1mk https://dx.doi.org/10.5061/dryad.jp1mk lic_creative-commons oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:88239 oai:easy.dans.knaw.nl:easy-dataset:88239 10.5061/dryad.jp1mk 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 re3data_____::r3d100000044 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c Life sciences medicine and health care Transcriptomics Genetic resource RNA-seq Colobanthus quitensis Assembly Climate Change Arctowski base King George Island Maritime Antarctic geo stat Dataset https://vocabularies.coar-repositories.org/resource_types/c_ddb1/ 2015 fttriple https://doi.org/10.5061/dryad.jp1mk 2023-01-22T16:53:33Z This article documents the public availability of raw transcriptome sequence data and assembled contigs of the Antarctic plant Colobanthus quitensis grown in two different climatic conditions. BLAST hits are also provided. SRX814890Sequence files of Colobanthus quitensis transcriptome grown in two different climatic conditions. Sequences were obtained using Illumina Platform Hi-Seq2000. Assembly: Paired-end reads were put through the sequencing pipeline consisting of base calling using Illumina Pipeline, trimming for quality with ERNE and from adapters with Cutadapt software. High quality reads from all libraries combined were then assembled into contigs using the de novo assembler toolbox of CLC Genomics Workbench version 6.5.1 setting default parameters but ‘word size’ to 64.Blast Hits of Colobanthus quitensis transcriptomeAll contigs were screened against Viridiplantae protein databases Nr using BLASTx (e-value<10-5) (Altschul et al. 1990).blastx_C_quietensis_vs_Viridiplantae_no_Ptrichocarpa_no_Vvinifera.csv Dataset Antarc* Antarctic King George Island Unknown Antarctic The Antarctic King George Island Arctowski ENVELOPE(-58.467,-58.467,-62.167,-62.167) |
institution |
Open Polar |
collection |
Unknown |
op_collection_id |
fttriple |
language |
unknown |
topic |
Life sciences medicine and health care Transcriptomics Genetic resource RNA-seq Colobanthus quitensis Assembly Climate Change Arctowski base King George Island Maritime Antarctic geo stat |
spellingShingle |
Life sciences medicine and health care Transcriptomics Genetic resource RNA-seq Colobanthus quitensis Assembly Climate Change Arctowski base King George Island Maritime Antarctic geo stat Bertini, Laura Proietti, Silvia Caruso, Carla Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015 |
topic_facet |
Life sciences medicine and health care Transcriptomics Genetic resource RNA-seq Colobanthus quitensis Assembly Climate Change Arctowski base King George Island Maritime Antarctic geo stat |
description |
This article documents the public availability of raw transcriptome sequence data and assembled contigs of the Antarctic plant Colobanthus quitensis grown in two different climatic conditions. BLAST hits are also provided. SRX814890Sequence files of Colobanthus quitensis transcriptome grown in two different climatic conditions. Sequences were obtained using Illumina Platform Hi-Seq2000. Assembly: Paired-end reads were put through the sequencing pipeline consisting of base calling using Illumina Pipeline, trimming for quality with ERNE and from adapters with Cutadapt software. High quality reads from all libraries combined were then assembled into contigs using the de novo assembler toolbox of CLC Genomics Workbench version 6.5.1 setting default parameters but ‘word size’ to 64.Blast Hits of Colobanthus quitensis transcriptomeAll contigs were screened against Viridiplantae protein databases Nr using BLASTx (e-value<10-5) (Altschul et al. 1990).blastx_C_quietensis_vs_Viridiplantae_no_Ptrichocarpa_no_Vvinifera.csv |
format |
Dataset |
author |
Bertini, Laura Proietti, Silvia Caruso, Carla |
author_facet |
Bertini, Laura Proietti, Silvia Caruso, Carla |
author_sort |
Bertini, Laura |
title |
Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015 |
title_short |
Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015 |
title_full |
Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015 |
title_fullStr |
Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015 |
title_full_unstemmed |
Data from: "Transcriptome sequencing of the Antarctic Colobanthus quitensis (Kunth) Bartl (Caryophillaceae)" in Genomic Resources Notes Accepted 1 February 2015 – 31 March 2015 |
title_sort |
data from: "transcriptome sequencing of the antarctic colobanthus quitensis (kunth) bartl (caryophillaceae)" in genomic resources notes accepted 1 february 2015 – 31 march 2015 |
publishDate |
2015 |
url |
https://doi.org/10.5061/dryad.jp1mk |
long_lat |
ENVELOPE(-58.467,-58.467,-62.167,-62.167) |
geographic |
Antarctic The Antarctic King George Island Arctowski |
geographic_facet |
Antarctic The Antarctic King George Island Arctowski |
genre |
Antarc* Antarctic King George Island |
genre_facet |
Antarc* Antarctic King George Island |
op_source |
oai:services.nod.dans.knaw.nl:Products/dans:oai:easy.dans.knaw.nl:easy-dataset:88239 oai:easy.dans.knaw.nl:easy-dataset:88239 10.5061/dryad.jp1mk 10|eurocrisdris::fe4903425d9040f680d8610d9079ea14 10|re3data_____::84e123776089ce3c7a33db98d9cd15a8 10|openaire____::9e3be59865b2c1c335d32dae2fe7b254 10|re3data_____::94816e6421eeb072e7742ce6a9decc5f 10|openaire____::081b82f96300b6a6e3d282bad31cb6e2 re3data_____::r3d100000044 10|opendoar____::8b6dd7db9af49e67306feb59a8bdc52c |
op_relation |
http://dx.doi.org/10.5061/dryad.jp1mk https://dx.doi.org/10.5061/dryad.jp1mk |
op_rights |
lic_creative-commons |
op_doi |
https://doi.org/10.5061/dryad.jp1mk |
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1766263534165950464 |